Wendy L Clement1, Mónica Arakaki2, Patrick W Sweeney3, Erika J Edwards4, Michael J Donoghue5. 1. Department of Biology, The College of New Jersey, 2000 Pennington Rd, Ewing, New Jersey 08628 USA. 2. Facultad de Ciencias Biológicas and Museo de Historia Natural, UNMSM, Av. Arenales 1256, Apdo. 14-0434, Lima 14, Perú Department of Ecology and Evolutionary Biology, Brown University, Box G-W, Providence, Rhode Island 02912 USA. 3. Peabody Museum of Natural History, Yale University, P.O. Box 208105, New Haven, Connecticut 06520 USA. 4. Department of Ecology and Evolutionary Biology, Brown University, Box G-W, Providence, Rhode Island 02912 USA. 5. Department of Ecology and Evolutionary Biology, Yale University, P.O. Box 208106, New Haven, Connecticut 06520 USA.
Abstract
• Premise of the study: Despite recent progress, significant uncertainties remain concerning relationships among early-branching lineages within Viburnum (Adoxaceae), prohibiting a new classification and hindering studies of character evolution and the increasing use of Viburnum in addressing a wide range of ecological and evolutionary questions. We hoped to resolve these issues by sequencing whole plastid genomes for representative species and combining these with molecular data previously obtained from an expanded taxon sample.• Methods: We performed paired-end Illumina sequencing of plastid genomes of 22 Viburnum species and combined these data with a 10-gene data set to infer phylogenetic relationships for 113 species. We used the results to devise a comprehensive phylogenetic classification and to analyze the evolution of eight morphological characters that vary among early-branching lineages.• Key results: With greatly increased levels of confidence in most of the early branches, we propose a phylogenetic classification of Viburnum, providing formal phylogenetic definitions for 30 clades, including 13 with names recognized under the International Code of Nomenclature for Algae, Fungi, and Plants, eight with previously proposed informal names, and nine newly proposed names for major branches. Our parsimony reconstructions of bud structure, leaf margins, inflorescence form, ruminate endosperm, extrafloral nectaries, glandular trichomes, palisade anatomy, and pollen exine showed varying levels of homoplasy, but collectively provided morphological support for some, though not all, of the major clades.• Conclusions: Our study demonstrates the value of next-generation plastid sequencing, the ease of creating a formal phylogenetic classification, and the utility of such a system in describing patterns of character evolution.
• Premise of the study: Despite recent progress, significant uncertainties remain concerning relationships among early-branching lineages within Viburnum (Adoxaceae), prohibiting a new classification and hindering studies of character evolution and the increasing use of Viburnum in addressing a wide range of ecological and evolutionary questions. We hoped to resolve these issues by sequencing whole plastid genomes for representative species and combining these with molecular data previously obtained from an expanded taxon sample.• Methods: We performed paired-end Illumina sequencing of plastid genomes of 22 Viburnum species and combined these data with a 10-gene data set to infer phylogenetic relationships for 113 species. We used the results to devise a comprehensive phylogenetic classification and to analyze the evolution of eight morphological characters that vary among early-branching lineages.• Key results: With greatly increased levels of confidence in most of the early branches, we propose a phylogenetic classification of Viburnum, providing formal phylogenetic definitions for 30 clades, including 13 with names recognized under the International Code of Nomenclature for Algae, Fungi, and Plants, eight with previously proposed informal names, and nine newly proposed names for major branches. Our parsimony reconstructions of bud structure, leaf margins, inflorescence form, ruminate endosperm, extrafloral nectaries, glandular trichomes, palisade anatomy, and pollen exine showed varying levels of homoplasy, but collectively provided morphological support for some, though not all, of the major clades.• Conclusions: Our study demonstrates the value of next-generation plastid sequencing, the ease of creating a formal phylogenetic classification, and the utility of such a system in describing patterns of character evolution.
Authors: Brian Park; Miranda Sinnott-Armstrong; Caroline Schlutius; Juan-Carlos Penagos Zuluaga; Elizabeth L Spriggs; Raymond G Simpson; Edgar Benavides; Michael J Landis; Patrick W Sweeney; Deren A R Eaton; Michael J Donoghue Journal: Ann Bot Date: 2019-01-23 Impact factor: 4.357
Authors: Michael J Donoghue; Deren A R Eaton; Carlos A Maya-Lastra; Michael J Landis; Patrick W Sweeney; Mark E Olson; N Ivalú Cacho; Morgan K Moeglein; Jordan R Gardner; Nora M Heaphy; Matiss Castorena; Alí Segovia Rivas; Wendy L Clement; Erika J Edwards Journal: Nat Ecol Evol Date: 2022-07-18 Impact factor: 19.100
Authors: Frederic Lens; Rutger A Vos; Guillaume Charrier; Timo van der Niet; Vincent Merckx; Pieter Baas; Jesus Aguirre Gutierrez; Bart Jacobs; Larissa Chacon Dória; Erik Smets; Sylvain Delzon; Steven B Janssens Journal: Ann Bot Date: 2016-10-01 Impact factor: 4.357
Authors: Trinity P Hamm; Marcin Nowicki; Sarah L Boggess; William E Klingeman; Denita Hadziabdic; Matthew L Huff; Margaret E Staton; Robert N Trigiano Journal: Plants (Basel) Date: 2021-03-05