Literature DB >> 24927833

Chromatin immunoprecipitation protocol for mammalian cells.

Makiko Komata1, Yuki Katou, Hiroshi Tanaka, Ryuichiro Nakato, Katsuhiko Shirahige, Masashige Bando.   

Abstract

The genomic approach (ChIP-seq) we introduce here is now a widely used powerful tool to explore protein-DNA interaction at genome-wide level in high resolution. This technology opens up the way to understand how local event mediated by protein-protein or protein-DNA interactions lead to the dynamic changes of overall chromosome structure and how variety of proteins make a regulatory network for the faithful execution of various chromosomal functions (i.e., transcription, replication, recombination, repair, and partition).

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Year:  2014        PMID: 24927833     DOI: 10.1007/978-1-4939-0805-9_4

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  8 in total

1.  GABAergic Interneuron Differentiation in the Basal Forebrain Is Mediated through Direct Regulation of Glutamic Acid Decarboxylase Isoforms by Dlx Homeobox Transcription Factors.

Authors:  Trung N Le; Qing-Ping Zhou; Inma Cobos; Shunzhen Zhang; Jamie Zagozewski; Sara Japoni; Jerry Vriend; Tracie Parkinson; Guoyan Du; John L Rubenstein; David D Eisenstat
Journal:  J Neurosci       Date:  2017-08-08       Impact factor: 6.167

2.  RRM2 gene expression depends on BAF180 subunit of SWISNF chromatin remodeling complex and correlates with abundance of tumor infiltrating lymphocytes in ccRCC.

Authors:  Joanna Szarkowska; Pawel Cwiek; Michal Szymanski; Natalia Rusetska; Iga Jancewicz; Malgorzata Stachowiak; Monika Swiatek; Maciej Luba; Ryszard Konopinski; Szymon Kubala; Renata Zub; Jakub Kucharz; Pawel Wiechno; Janusz A Siedlecki; Sergiusz Markowicz; Elzbieta Sarnowska; Tomasz J Sarnowski
Journal:  Am J Cancer Res       Date:  2021-12-15       Impact factor: 6.166

3.  Large-scale multi-omics analysis suggests specific roles for intragenic cohesin in transcriptional regulation.

Authors:  Jiankang Wang; Masashige Bando; Katsuhiko Shirahige; Ryuichiro Nakato
Journal:  Nat Commun       Date:  2022-06-09       Impact factor: 17.694

4.  Germline gain-of-function mutations in AFF4 cause a developmental syndrome functionally linking the super elongation complex and cohesin.

Authors:  Kosuke Izumi; Ryuichiro Nakato; Zhe Zhang; Andrew C Edmondson; Sarah Noon; Matthew C Dulik; Ramakrishnan Rajagopalan; Charles P Venditti; Karen Gripp; Joy Samanich; Elaine H Zackai; Matthew A Deardorff; Dinah Clark; Julian L Allen; Dale Dorsett; Ziva Misulovin; Makiko Komata; Masashige Bando; Maninder Kaur; Yuki Katou; Katsuhiko Shirahige; Ian D Krantz
Journal:  Nat Genet       Date:  2015-03-02       Impact factor: 38.330

5.  Decreased cohesin in the brain leads to defective synapse development and anxiety-related behavior.

Authors:  Yuki Fujita; Koji Masuda; Masashige Bando; Ryuichiro Nakato; Yuki Katou; Takashi Tanaka; Masahiro Nakayama; Keizo Takao; Tsuyoshi Miyakawa; Tatsunori Tanaka; Yukio Ago; Hitoshi Hashimoto; Katsuhiko Shirahige; Toshihide Yamashita
Journal:  J Exp Med       Date:  2017-04-13       Impact factor: 14.307

6.  G-quadruplex DNA drives genomic instability and represents a targetable molecular abnormality in ATRX-deficient malignant glioma.

Authors:  Yuxiang Wang; Jie Yang; Aaron T Wild; Wei H Wu; Rachna Shah; Carla Danussi; Gregory J Riggins; Kasthuri Kannan; Erik P Sulman; Timothy A Chan; Jason T Huse
Journal:  Nat Commun       Date:  2019-02-26       Impact factor: 14.919

7.  New insight into the significance of KLF4 PARylation in genome stability, carcinogenesis, and therapy.

Authors:  Zhuan Zhou; Furong Huang; Indira Shrivastava; Rui Zhu; Aiping Luo; Michael Hottiger; Ivet Bahar; Zhihua Liu; Massimo Cristofanilli; Yong Wan
Journal:  EMBO Mol Med       Date:  2020-11-24       Impact factor: 12.137

8.  FABP4 inhibitor BMS309403 protects against hypoxia-induced H9c2 cardiomyocyte apoptosis through attenuating endoplasmic reticulum stress.

Authors:  Fuqiang Sun; Jiangchuan Du; Hongbin Li; Shuang Hao; Guochang Zhao; Fanfan Lu
Journal:  J Cell Mol Med       Date:  2020-09-07       Impact factor: 5.310

  8 in total

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