| Literature DB >> 24921655 |
Sarah J Helyar1, Hywel Ap D Lloyd1, Mark de Bruyn1, Jonathan Leake2, Niall Bennett3, Gary R Carvalho1.
Abstract
Increasing consumer demand for seafood, combined with concern over the health of our oceans, has led to many initiatives aimed at tackling destructive fishing practices and promoting the sustainability of fisheries. An important global threat to sustainable fisheries is Illegal, Unreported and Unregulated (IUU) fishing, and there is now an increased emphasis on the use of trade measures to prevent IUU-sourced fish and fish products from entering the international market. Initiatives encompass new legislation in the European Union requiring the inclusion of species names on catch labels throughout the distribution chain. Such certification measures do not, however, guarantee accuracy of species designation. Using two DNA-based methods to compare species descriptions with molecular ID, we examined 386 samples of white fish, or products labelled as primarily containing white fish, from major UK supermarket chains. Species specific real-time PCR probes were used for cod (Gadus morhua) and haddock (Melanogrammus aeglefinus) to provide a highly sensitive and species-specific test for the major species of white fish sold in the UK. Additionally, fish-specific primers were used to sequence the forensically validated barcoding gene, mitochondrial cytochrome oxidase I (COI). Overall levels of congruence between product label and genetic species identification were high, with 94.34% of samples correctly labelled, though a significant proportion in terms of potential volume, were mislabelled. Substitution was usually for a cheaper alternative and, in one case, extended to a tropical species. To our knowledge, this is the first published study encompassing a large-scale assessment of UK retailers, and if representative, indicates a potentially significant incidence of incorrect product designation.Entities:
Mesh:
Year: 2014 PMID: 24921655 PMCID: PMC4055496 DOI: 10.1371/journal.pone.0098691
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
list of all primers used.
| Sequence 5′-3′ | Reporter | Quencher | |
| COD P |
| - | - |
| HAD P |
| - | - |
| GAD-F | GCAATCGAGTYGTATCYCTWCAAGGAT | FAM | Non-fluorescent |
| GAD-R | CACAAATGRGCYCCTCTWCTTGC | TET | Non-fluorescent |
| FishF1 |
| - | - |
| FishR2 |
| - | - |
COD P, HAD P, GAD-F, and GAD-R were used in the real-time-PCR, and FishF1 and FISHR2 were used for the sequencing PCRs.
Summary of all mislabelled samples.
| Identification Code | Species reported (type) | Area of Catch | real-time PCR | First sequence identity | Second sequence identity |
| 1415 | Cod (breaded fillet) | Atlantic | Negative |
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| 1426 | Cod (breaded fillet) | Atlantic | Negative |
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| 1446 | Cod (breaded fillet) | Atlantic | Negative |
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| 1747 | Cod (precooked meal) | Atlantic | Negative |
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| 1889 | Cod (precooked meal) | Atlantic | Negative |
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| 1975 | Cod (breaded fillet) | Atlantic | Negative |
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| 1886 | Cod (fish cakes) | NA | Inconclusive |
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| 1765 | Cod (fish cakes) | NA |
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| 1892 | Cod (fish fingers) | NA |
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| 1470 | Haddock (precooked meal) | Atlantic |
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| 1812 | Haddock (fish cakes) | Atlantic |
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| 1888 | Haddock (precooked meal) | Atlantic |
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| 1977 | Haddock (breaded fillet) | Atlantic |
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| 1989 | Haddock (precooked meal) | Atlantic |
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| 1868 | Haddock (precooked meal) | Atlantic |
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| 1851 | Haddock (precooked meal) | Atlantic | Negative |
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| 1452 | Haddock (fish cakes) | Atlantic | Inconclusive |
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| 1847 | Haddock (fish cakes) | Atlantic | Inconclusive |
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| 1763 | Alaskan Pollack (fish cakes) | Pacific | Negative |
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| 1813 | Hake | NA | Negative |
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| 1848 | Whiting (precooked meal) | NA | Inconclusive |
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NA: Not available from packaging. Negative: neither of the real-time PCR probes amplified. Inconclusive: both real-time PCR probes amplified. First and second sequence identities are the result of independent DNA extractions and sequencing (see methods for details).
Figure 1Neighbour-joining tree showing all mislabelled samples together with representative reference sequences taken from BOLD.
Reference sequences are colour coded according to species and samples tested are colour coded according to the species stated on the packaging. Samples that have two sequences are labelled a and b.