Literature DB >> 24917359

Activating human genes with zinc finger proteins, transcription activator-like effectors and CRISPR/Cas9 for gene therapy and regenerative medicine.

Charles A Gersbach1, Pablo Perez-Pinera.   

Abstract

New technologies have recently been developed to control the expression of human genes in their native genomic context by engineering synthetic transcription factors that can be targeted to any DNA sequence. The ability to precisely regulate any gene as it occurs naturally in the genome provides a means to address a variety of diseases and disorders. This approach also circumvents some of the traditional challenges of gene therapy. In this editorial, we review the technologies that have enabled targeted human gene activation, including the engineering of transcription factors based on zinc finger proteins, transcription activator-like effectors and the CRISPR/Cas9 system. Additionally, we highlight examples in which these methods have been developed for therapeutic applications and discuss challenges and opportunities.

Entities:  

Keywords:  CRISPR; Cas9; gene editing; gene regulation; gene therapy; genetic reprogramming; protein engineering; transcription activator-like effector; transcription factor; zinc finger

Mesh:

Substances:

Year:  2014        PMID: 24917359      PMCID: PMC4236187          DOI: 10.1517/14728222.2014.913572

Source DB:  PubMed          Journal:  Expert Opin Ther Targets        ISSN: 1472-8222            Impact factor:   6.902


  20 in total

1.  Positive and negative regulation of endogenous genes by designed transcription factors.

Authors:  R R Beerli; B Dreier; C F Barbas
Journal:  Proc Natl Acad Sci U S A       Date:  2000-02-15       Impact factor: 11.205

2.  Re-activation of a dormant tumor suppressor gene maspin by designed transcription factors.

Authors:  A Beltran; S Parikh; Y Liu; B D Cuevas; G L Johnson; B W Futscher; P Blancafort
Journal:  Oncogene       Date:  2006-10-23       Impact factor: 9.867

3.  A TALE nuclease architecture for efficient genome editing.

Authors:  Jeffrey C Miller; Siyuan Tan; Guijuan Qiao; Kyle A Barlow; Jianbin Wang; Danny F Xia; Xiangdong Meng; David E Paschon; Elo Leung; Sarah J Hinkley; Gladys P Dulay; Kevin L Hua; Irina Ankoudinova; Gregory J Cost; Fyodor D Urnov; H Steve Zhang; Michael C Holmes; Lei Zhang; Philip D Gregory; Edward J Rebar
Journal:  Nat Biotechnol       Date:  2010-12-22       Impact factor: 54.908

4.  The artificial gene Jazz, a transcriptional regulator of utrophin, corrects the dystrophic pathology in mdx mice.

Authors:  Maria Grazia Di Certo; Nicoletta Corbi; Georgios Strimpakos; Annalisa Onori; Siro Luvisetto; Cinzia Severini; Angelo Guglielmotti; Enrico Maria Batassa; Cinzia Pisani; Aristide Floridi; Barbara Benassi; Maurizio Fanciulli; Armando Magrelli; Elisabetta Mattei; Claudio Passananti
Journal:  Hum Mol Genet       Date:  2009-12-04       Impact factor: 6.150

5.  Gene transfer of an engineered zinc finger protein enhances the anti-angiogenic defense system.

Authors:  Katsutoshi Yokoi; Huanda Steve Zhang; Shu Kachi; Kamaljit S Balaggan; Qi Yu; Dmitry Guschin; Mike Kunis; Richard Surosky; Liza M Africa; James W Bainbridge; Sharon Kaye Spratt; Philip D Gregory; Robin R Ali; Peter A Campochiaro
Journal:  Mol Ther       Date:  2007-08-14       Impact factor: 11.454

6.  Reprogramming to pluripotency using designer TALE transcription factors targeting enhancers.

Authors:  Xuefei Gao; Jian Yang; Jason C H Tsang; Jolene Ooi; Donghai Wu; Pentao Liu
Journal:  Stem Cell Reports       Date:  2013-07-11       Impact factor: 7.765

7.  CAS9 transcriptional activators for target specificity screening and paired nickases for cooperative genome engineering.

Authors:  Prashant Mali; John Aach; P Benjamin Stranges; Kevin M Esvelt; Mark Moosburner; Sriram Kosuri; Luhan Yang; George M Church
Journal:  Nat Biotechnol       Date:  2013-08-01       Impact factor: 54.908

8.  Multiplexed activation of endogenous genes by CRISPR-on, an RNA-guided transcriptional activator system.

Authors:  Albert W Cheng; Haoyi Wang; Hui Yang; Linyu Shi; Yarden Katz; Thorold W Theunissen; Sudharshan Rangarajan; Chikdu S Shivalila; Daniel B Dadon; Rudolf Jaenisch
Journal:  Cell Res       Date:  2013-08-27       Impact factor: 25.617

9.  RNA-guided gene activation by CRISPR-Cas9-based transcription factors.

Authors:  Pablo Perez-Pinera; D Dewran Kocak; Christopher M Vockley; Andrew F Adler; Ami M Kabadi; Lauren R Polstein; Pratiksha I Thakore; Katherine A Glass; David G Ousterout; Kam W Leong; Farshid Guilak; Gregory E Crawford; Timothy E Reddy; Charles A Gersbach
Journal:  Nat Methods       Date:  2013-07-25       Impact factor: 28.547

10.  Tunable and multifunctional eukaryotic transcription factors based on CRISPR/Cas.

Authors:  Fahim Farzadfard; Samuel D Perli; Timothy K Lu
Journal:  ACS Synth Biol       Date:  2013-09-11       Impact factor: 5.110

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  19 in total

1.  Prolonged re-expression of the hypermethylated gene EPB41L3 using artificial transcription factors and epigenetic drugs.

Authors:  Christian Huisman; Monique G P van der Wijst; Fahimeh Falahi; Juul Overkamp; Gellért Karsten; Martijn M Terpstra; Klaas Kok; Ate G J van der Zee; Ed Schuuring; G Bea A Wisman; Marianne G Rots
Journal:  Epigenetics       Date:  2015-04-01       Impact factor: 4.528

2.  CRISPR-on system for the activation of the endogenous human INS gene.

Authors:  C A Giménez; M Ielpi; A Mutto; L Grosembacher; P Argibay; F Pereyra-Bonnet
Journal:  Gene Ther       Date:  2016-04-04       Impact factor: 5.250

3.  Targeting Nrf2 in healthy and malignant ovarian epithelial cells: Protection versus promotion.

Authors:  Monique G P van der Wijst; Christian Huisman; Archibold Mposhi; Gerard Roelfes; Marianne G Rots
Journal:  Mol Oncol       Date:  2015-03-19       Impact factor: 6.603

4.  Multiplex CRISPR/Cas9-based genome engineering from a single lentiviral vector.

Authors:  Ami M Kabadi; David G Ousterout; Isaac B Hilton; Charles A Gersbach
Journal:  Nucleic Acids Res       Date:  2014-08-13       Impact factor: 16.971

Review 5.  Recent advances in RNAi-based strategies for therapy and prevention of HIV-1/AIDS.

Authors:  Manjunath N Swamy; Haoquan Wu; Premlata Shankar
Journal:  Adv Drug Deliv Rev       Date:  2016-03-21       Impact factor: 15.470

6.  Lentivirus pre-packed with Cas9 protein for safer gene editing.

Authors:  J G Choi; Y Dang; S Abraham; H Ma; J Zhang; H Guo; Y Cai; J G Mikkelsen; H Wu; P Shankar; N Manjunath
Journal:  Gene Ther       Date:  2016-04-07       Impact factor: 5.250

7.  Tuning DNA binding affinity and cleavage specificity of an engineered gene-targeting nuclease via surface display, flow cytometry and cellular analyses.

Authors:  Nixon Niyonzima; Abigail R Lambert; Rachel Werther; Harshana De Silva Feelixge; Pavitra Roychoudhury; Alexander L Greninger; Daniel Stone; Barry L Stoddard; Keith R Jerome
Journal:  Protein Eng Des Sel       Date:  2017-07-01       Impact factor: 1.650

8.  Boosting, Not Breaking: CRISPR Activators Treat Disease Models.

Authors:  Matthew Gemberling; Charles A Gersbach
Journal:  Mol Ther       Date:  2018-02-01       Impact factor: 11.454

9.  Activation of the Anti-Aging and Cognition-Enhancing Gene Klotho by CRISPR-dCas9 Transcriptional Effector Complex.

Authors:  Ci-Di Chen; Ella Zeldich; Yuexuan Li; Andrea Yuste; Carmela R Abraham
Journal:  J Mol Neurosci       Date:  2018-01-19       Impact factor: 3.444

Review 10.  CRISPR/Cas9: molecular tool for gene therapy to target genome and epigenome in the treatment of lung cancer.

Authors:  M Sachdeva; N Sachdeva; M Pal; N Gupta; I A Khan; M Majumdar; A Tiwari
Journal:  Cancer Gene Ther       Date:  2015-10-23       Impact factor: 5.987

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