Literature DB >> 24915944

A tale of tails: deciphering the contribution of terminal tails to the biochemical properties of two Dps proteins from Streptomyces coelicolor.

Matthew D Hitchings1, Philip Townsend, Ehmke Pohl, Paul D Facey, D Hugh Jones, Paul J Dyson, Ricardo Del Sol.   

Abstract

Dps proteins are members of an extensive family of proteins that oxidise and deposit iron in the form of ferric oxide, and are also able to bind DNA. Ferroxidation centres are formed at the interface of anti-parallel dimers, which further assemble into dodecameric nanocages with a hollow core where ferric oxide is deposited. Streptomyces coelicolor encodes three Dps-like proteins (DpsA, B and C). Despite sharing the conserved four-helix bundle organisation observed in members of the Dps family, they display significant differences in the length of terminal extensions, or tails. DpsA possess both N- and C-terminal tails of different lengths, and their removal affects quaternary structure assembly to varying degrees. DpsC quaternary structure, on the other hand, is heavily dependent on its N-terminal tail as its removal abolishes correct protein folding. Analysis of the crystal structure of dodecamers from both proteins revealed remarkable differences in the position of tails and interface surface area; and provides insight to explain the differences in biochemical behaviour observed while comparing DpsA and DpsC.

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Year:  2014        PMID: 24915944     DOI: 10.1007/s00018-014-1658-4

Source DB:  PubMed          Journal:  Cell Mol Life Sci        ISSN: 1420-682X            Impact factor:   9.261


  47 in total

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Journal:  J Comput Chem       Date:  2004-10       Impact factor: 3.376

2.  The crystal structure of Deinococcus radiodurans Dps protein (DR2263) reveals the presence of a novel metal centre in the N terminus.

Authors:  Célia V Romão; Edward P Mitchell; Sean McSweeney
Journal:  J Biol Inorg Chem       Date:  2006-07-20       Impact factor: 3.358

3.  XDS.

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Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-01-22

4.  Dissociation of ferritins.

Authors:  M C Linder; H R Kakavandi; P Miller; P L Wirth; G M Nagel
Journal:  Arch Biochem Biophys       Date:  1989-03       Impact factor: 4.013

5.  Antioxidant Dps protein from the thermophilic cyanobacterium Thermosynechococcus elongatus.

Authors:  Stefano Franceschini; Pierpaolo Ceci; Flaminia Alaleona; Emilia Chiancone; Andrea Ilari
Journal:  FEBS J       Date:  2006-10-03       Impact factor: 5.542

6.  Structure of two iron-binding proteins from Bacillus anthracis.

Authors:  Elena Papinutto; William G Dundon; Nea Pitulis; Roberto Battistutta; Cesare Montecucco; Giuseppe Zanotti
Journal:  J Biol Chem       Date:  2002-02-08       Impact factor: 5.157

7.  Differential DNA binding and protection by dimeric and dodecameric forms of the ferritin homolog Dps from Deinococcus radiodurans.

Authors:  Anne Grove; Steven P Wilkinson
Journal:  J Mol Biol       Date:  2005-04-01       Impact factor: 5.469

8.  Features and development of Coot.

Authors:  P Emsley; B Lohkamp; W G Scott; K Cowtan
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-03-24

9.  Functional comparison of Deinococcus radiodurans Dps proteins suggests distinct in vivo roles.

Authors:  Brian J Reon; Khoa H Nguyen; Gargi Bhattacharyya; Anne Grove
Journal:  Biochem J       Date:  2012-11-01       Impact factor: 3.857

10.  Metabolic sources of hydrogen peroxide in aerobically growing Escherichia coli.

Authors:  B González-Flecha; B Demple
Journal:  J Biol Chem       Date:  1995-06-09       Impact factor: 5.157

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  7 in total

1.  Unreported intrinsic disorder in proteins: Disorder emergency room.

Authors:  Vladimir N Uversky
Journal:  Intrinsically Disord Proteins       Date:  2015-04-22

2.  Identification of FtpA, a Dps-Like Protein Involved in Anti-Oxidative Stress and Virulence in Actinobacillus pleuropneumoniae.

Authors:  Hao Tang; Qiuhong Zhang; Weiyao Han; Zhenyue Wang; Siqi Pang; Han Zhu; Kangning Tan; Xiao Liu; Paul R Langford; Qi Huang; Rui Zhou; Lu Li
Journal:  J Bacteriol       Date:  2021-11-22       Impact factor: 3.476

Review 3.  Dps Is a Universally Conserved Dual-Action DNA-Binding and Ferritin Protein.

Authors:  Katie Orban; Steven E Finkel
Journal:  J Bacteriol       Date:  2022-04-05       Impact factor: 3.476

4.  Structural Insights into Iron Ions Accumulation in Dps Nanocage.

Authors:  Yury Chesnokov; Andrey Mozhaev; Roman Kamyshinsky; Alexander Gordienko; Liubov Dadinova
Journal:  Int J Mol Sci       Date:  2022-05-10       Impact factor: 6.208

5.  Dps-DNA interaction in Marinobacter hydrocarbonoclasticus protein: effect of a single-charge alteration.

Authors:  João P Jacinto; Daniela Penas; João P L Guerra; Ana V Almeida; Nykola C Jones; Søren V Hoffmann; Pedro Tavares; Alice S Pereira
Journal:  Eur Biophys J       Date:  2021-04-26       Impact factor: 1.733

6.  A highly processive actinobacterial topoisomerase I - thoughts on Streptomyces' demand for an enzyme with a unique C-terminal domain.

Authors:  Marcin J Szafran; Agnieszka Strzałka; Dagmara Jakimowicz
Journal:  Microbiology (Reading)       Date:  2019-08-07       Impact factor: 2.777

7.  Biochemical and structural characterization of a thermostable Dps protein with His-type ferroxidase centers and outer metal-binding sites.

Authors:  Takuo Minato; Takamasa Teramoto; Yoshimitsu Kakuta; Seiji Ogo; Ki-Seok Yoon
Journal:  FEBS Open Bio       Date:  2020-05-28       Impact factor: 2.693

  7 in total

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