Literature DB >> 24912108

Selection of unique Escherichia coli clones by random amplified polymorphic DNA (RAPD): Evaluation by whole genome sequencing.

Karen L Nielsen1, Paul A Godfrey2, Marc Stegger3, Paal S Andersen3, Michael Feldgarden2, Niels Frimodt-Møller4.   

Abstract

Identifying and characterizing clonal diversity are important when analysing fecal flora. We evaluated random amplified polymorphic DNA (RAPD) PCR, applied for selection of Escherichia coli isolates, by whole genome sequencing. RAPD was fast, and reproducible as screening method for selection of distinct E. coli clones in fecal swabs.
Copyright © 2014 Elsevier B.V. All rights reserved.

Entities:  

Keywords:  Escherichia coli; Fecal flora; Molecular typing; Urinary tract infection; Whole-genome sequencing

Mesh：

Year:  2014        PMID： 24912108      PMCID： PMC4166437          DOI： 10.1016/j.mimet.2014.05.018

Source DB:  PubMed          Journal:  J Microbiol Methods        ISSN： 0167-7012            Impact factor:   2.363


  18 in total

1.  Genetic relatedness of a non-motile variant O157 enteropathogenic Escherichia coli (EPEC) strain and E. coli strains belonging to pathogenic related groups.

Authors:  A H Regua-Mangia; J R C Andrade; A G M Gonzalez; V Zahner; A M F Cerqueira; L M Teixeira
Journal:  Microbiol Res       Date:  2006-07-03       Impact factor: 5.415

2.  Multilocus sequence typing: a portable approach to the identification of clones within populations of pathogenic microorganisms.

Authors:  M C Maiden; J A Bygraves; E Feil; G Morelli; J E Russell; R Urwin; Q Zhang; J Zhou; K Zurth; D A Caugant; I M Feavers; M Achtman; B G Spratt
Journal:  Proc Natl Acad Sci U S A       Date:  1998-03-17       Impact factor: 11.205

3.  Commensal Escherichia coli of healthy humans: a reservoir for antibiotic-resistance determinants.

Authors:  Jannine K Bailey; Jeremy L Pinyon; Sashindran Anantham; Ruth M Hall
Journal:  J Med Microbiol       Date:  2010-07-29       Impact factor: 2.472

4.  Genetic evidence supporting the fecal-perineal-urethral hypothesis in cystitis caused by Escherichia coli.

Authors:  S Yamamoto; T Tsukamoto; A Terai; H Kurazono; Y Takeda; O Yoshida
Journal:  J Urol       Date:  1997-03       Impact factor: 7.450

5.  Relationship between Escherichia coli strains causing acute cystitis in women and the fecal E. coli population of the host.

Authors:  Eva Moreno; Antonia Andreu; Carles Pigrau; Michael A Kuskowski; James R Johnson; Guillem Prats
Journal:  J Clin Microbiol       Date:  2008-05-21       Impact factor: 5.948

6.  Assigning Escherichia coli strains to phylogenetic groups: multi-locus sequence typing versus the PCR triplex method.

Authors:  David M Gordon; Olivier Clermont; Heather Tolley; Erick Denamur
Journal:  Environ Microbiol       Date:  2008-06-02       Impact factor: 5.491

7.  Laboratory investigation of a multistate food-borne outbreak of Escherichia coli O157:H7 by using pulsed-field gel electrophoresis and phage typing.

Authors:  T J Barrett; H Lior; J H Green; R Khakhria; J G Wells; B P Bell; K D Greene; J Lewis; P M Griffin
Journal:  J Clin Microbiol       Date:  1994-12       Impact factor: 5.948

8.  Factors affecting reproducibility of random amplified polymorphic DNA fingerprinting.

Authors:  J R Meunier; P A Grimont
Journal:  Res Microbiol       Date:  1993-06       Impact factor: 3.992

9.  Genetic diversity of Escherichia coli recovered from the oral cavity of beef cattle and their relatedness to faecal E. coli.

Authors:  M Aslam; G G Greer; F M Nattress; C O Gill; L M McMullen
Journal:  Lett Appl Microbiol       Date:  2004       Impact factor: 2.858

10.  FastTree: computing large minimum evolution trees with profiles instead of a distance matrix.

Authors:  Morgan N Price; Paramvir S Dehal; Adam P Arkin
Journal:  Mol Biol Evol       Date:  2009-04-17       Impact factor: 16.240
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  8 in total

1.  Whole-genome comparison of urinary pathogenic Escherichia coli and faecal isolates of UTI patients and healthy controls.

Authors:  Karen Leth Nielsen; Marc Stegger; Kristoffer Kiil; Paul A Godfrey; Michael Feldgarden; Berit Lilje; Paal S Andersen; Niels Frimodt-Møller
Journal:  Int J Med Microbiol       Date:  2017-09-14       Impact factor: 3.473

2.  Day-to-Day Dynamics of Commensal Escherichia coli in Zimbabwean Cows Evidence Temporal Fluctuations within a Host-Specific Population Structure.

Authors:  Méril Massot; Camille Couffignal; Olivier Clermont; Camille D'Humières; Jérémie Chatel; Nicolas Plault; Antoine Andremont; Alexandre Caron; France Mentré; Erick Denamur
Journal:  Appl Environ Microbiol       Date:  2017-06-16       Impact factor: 4.792

3.  Extensive Within-Host Diversity in Fecally Carried Extended-Spectrum-Beta-Lactamase-Producing Escherichia coli Isolates: Implications for Transmission Analyses.

Authors:  N Stoesser; A E Sheppard; C E Moore; T Golubchik; C M Parry; P Nget; M Saroeun; N P J Day; A Giess; J R Johnson; T E A Peto; D W Crook; A S Walker
Journal:  J Clin Microbiol       Date:  2015-04-22       Impact factor: 5.948

4.  Screening and characterization of RAPD markers in viscerotropic Leishmania parasites.

Authors:  Imen Mkada-Driss; Ramzi Lahmadi; Ahmed S Chakroun; Chiraz Talbi; Souheila Guerbouj; Mehdi Driss; Elwaleed M Elamine; Elisa Cupolillo; Moawia M Mukhtar; Ikram Guizani
Journal:  PLoS One       Date:  2014-10-14       Impact factor: 3.240

5.  Genomes of Escherichia coli bacteraemia isolates originating from urinary tract foci contain more virulence-associated genes than those from non-urinary foci and neutropaenic hosts.

Authors:  Adam P Dale; Anish K Pandey; Richard J Hesp; Konstantinos Belogiannis; Jay R Laver; Clifford C Shone; Robert C Read
Journal:  J Infect       Date:  2018-11-02       Impact factor: 6.072

6.  Sampling and diversity of Escherichia coli from the enteric microbiota in patients with Escherichia coli bacteraemia.

Authors:  Mia Mosavie; Oliver Blandy; Elita Jauneikaite; Isabel Caldas; Matthew J Ellington; Neil Woodford; Shiranee Sriskandan
Journal:  BMC Res Notes       Date:  2019-06-13

7.  Escherichia coli belonging to ST131 rarely transfers bla ctx-m-15 to fecal Escherichia coli.

Authors:  Karen Rønø Thingholm; Frederik Boëtius Hertz; Anders Løbner-Olesen; Niels Frimodt-Møller; Karen Leth Nielsen
Journal:  Infect Drug Resist       Date:  2019-08-06       Impact factor: 4.003

8.  Lacticaseicin 30 and Colistin as a Promising Antibiotic Formulation against Gram-Negative β-Lactamase-Producing Strains and Colistin-Resistant Strains.

Authors:  Désiré Madi-Moussa; Yanath Belguesmia; Audrey Charlet; Djamel Drider; Françoise Coucheney
Journal:  Antibiotics (Basel)       Date:  2021-12-24
  8 in total

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