Literature DB >> 24901508

Understanding molecular crystals with dispersion-inclusive density functional theory: pairwise corrections and beyond.

Leeor Kronik1, Alexandre Tkatchenko.   

Abstract

CONSPECTUS: Molecular crystals are ubiquitous in many areas of science and engineering, including biology and medicine. Until recently, our ability to understand and predict their structure and properties using density functional theory was severely limited by the lack of approximate exchange-correlation functionals able to achieve sufficient accuracy. Here we show that there are many cases where the simple, minimally empirical pairwise correction scheme of Tkatchenko and Scheffler provides a useful prediction of the structure and properties of molecular crystals. After a brief introduction of the approach, we demonstrate its strength through some examples taken from our recent work. First, we show the accuracy of the approach using benchmark data sets of molecular complexes. Then we show its efficacy for structural determination using the hemozoin crystal, a challenging system possessing a wide range of strong and weak binding scenarios. Next, we show that it is equally useful for response properties by considering the elastic constants exhibited by the supramolecular diphenylalanine peptide solid and the infrared signature of water libration movements in brushite. Throughout, we emphasize lessons learned not only for the methodology but also for the chemistry and physics of the crystals in question. We further show that in many other scenarios where the simple pairwise correction scheme is not sufficiently accurate, one can go beyond it by employing a computationally inexpensive many-body dispersive approach that results in useful, quantitative accuracy, even in the presence of significant screening and/or multibody contributions to the dispersive energy. We explain the principles of the many-body approach and demonstrate its accuracy for benchmark data sets of small and large molecular complexes and molecular solids.

Entities:  

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Year:  2014        PMID: 24901508     DOI: 10.1021/ar500144s

Source DB:  PubMed          Journal:  Acc Chem Res        ISSN: 0001-4842            Impact factor:   22.384


  15 in total

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Authors:  Joshua D Hartman; Ryan A Kudla; Graeme M Day; Leonard J Mueller; Gregory J O Beran
Journal:  Phys Chem Chem Phys       Date:  2016-07-19       Impact factor: 3.676

2.  Harnessing Deep Learning for Optimization of Lennard-Jones Parameters for the Polarizable Classical Drude Oscillator Force Field.

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Journal:  J Chem Theory Comput       Date:  2022-04-01       Impact factor: 6.578

3.  Report on the sixth blind test of organic crystal structure prediction methods.

Authors:  Anthony M Reilly; Richard I Cooper; Claire S Adjiman; Saswata Bhattacharya; A Daniel Boese; Jan Gerit Brandenburg; Peter J Bygrave; Rita Bylsma; Josh E Campbell; Roberto Car; David H Case; Renu Chadha; Jason C Cole; Katherine Cosburn; Herma M Cuppen; Farren Curtis; Graeme M Day; Robert A DiStasio; Alexander Dzyabchenko; Bouke P van Eijck; Dennis M Elking; Joost A van den Ende; Julio C Facelli; Marta B Ferraro; Laszlo Fusti-Molnar; Christina Anna Gatsiou; Thomas S Gee; René de Gelder; Luca M Ghiringhelli; Hitoshi Goto; Stefan Grimme; Rui Guo; Detlef W M Hofmann; Johannes Hoja; Rebecca K Hylton; Luca Iuzzolino; Wojciech Jankiewicz; Daniël T de Jong; John Kendrick; Niek J J de Klerk; Hsin Yu Ko; Liudmila N Kuleshova; Xiayue Li; Sanjaya Lohani; Frank J J Leusen; Albert M Lund; Jian Lv; Yanming Ma; Noa Marom; Artëm E Masunov; Patrick McCabe; David P McMahon; Hugo Meekes; Michael P Metz; Alston J Misquitta; Sharmarke Mohamed; Bartomeu Monserrat; Richard J Needs; Marcus A Neumann; Jonas Nyman; Shigeaki Obata; Harald Oberhofer; Artem R Oganov; Anita M Orendt; Gabriel I Pagola; Constantinos C Pantelides; Chris J Pickard; Rafal Podeszwa; Louise S Price; Sarah L Price; Angeles Pulido; Murray G Read; Karsten Reuter; Elia Schneider; Christoph Schober; Gregory P Shields; Pawanpreet Singh; Isaac J Sugden; Krzysztof Szalewicz; Christopher R Taylor; Alexandre Tkatchenko; Mark E Tuckerman; Francesca Vacarro; Manolis Vasileiadis; Alvaro Vazquez-Mayagoitia; Leslie Vogt; Yanchao Wang; Rona E Watson; Gilles A de Wijs; Jack Yang; Qiang Zhu; Colin R Groom
Journal:  Acta Crystallogr B Struct Sci Cryst Eng Mater       Date:  2016-08-01

4.  Aromatic molecules on low-index coinage metal surfaces: Many-body dispersion effects.

Authors:  Yingda Jiang; Sha Yang; Shuang Li; Wei Liu
Journal:  Sci Rep       Date:  2016-12-22       Impact factor: 4.379

5.  Theoretical studies on a carbonaceous molecular bearing: association thermodynamics and dual-mode rolling dynamics.

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6.  Terahertz spectroscopy of 2,4,6-trinitrotoluene molecular solids from first principles.

Authors:  Ido Azuri; Anna Hirsch; Anthony M Reilly; Alexandre Tkatchenko; Shai Kendler; Oded Hod; Leeor Kronik
Journal:  Beilstein J Org Chem       Date:  2018-02-09       Impact factor: 2.883

7.  Modeling quantum nuclei with perturbed path integral molecular dynamics.

Authors:  Igor Poltavsky; Alexandre Tkatchenko
Journal:  Chem Sci       Date:  2015-10-30       Impact factor: 9.825

8.  Revealing the role of organic cations in hybrid halide perovskite CH3NH3PbI3.

Authors:  Carlo Motta; Fedwa El-Mellouhi; Sabre Kais; Nouar Tabet; Fahhad Alharbi; Stefano Sanvito
Journal:  Nat Commun       Date:  2015-04-27       Impact factor: 14.919

9.  Origin and structure of polar domains in doped molecular crystals.

Authors:  E Meirzadeh; I Azuri; Y Qi; D Ehre; A M Rappe; M Lahav; L Kronik; I Lubomirsky
Journal:  Nat Commun       Date:  2016-11-08       Impact factor: 14.919

10.  Analytical nuclear gradients for the range-separated many-body dispersion model of noncovalent interactions.

Authors:  Martin A Blood-Forsythe; Thomas Markovich; Robert A DiStasio; Roberto Car; Alán Aspuru-Guzik
Journal:  Chem Sci       Date:  2015-10-27       Impact factor: 9.825

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