Literature DB >> 24900700

Identification of New Nonsteroidal RORα Ligands; Related Structure-Activity Relationships and Docking Studies.

Mathieu Dubernet1, Nicolas Duguet2, Lionel Colliandre2, Christophe Berini2, Stéphane Helleboid1, Marilyne Bourotte1, Matthieu Daillet2, Lucie Maingot2, Sébastien Daix1, Jean-François Delhomel1, Luc Morin-Allory2, Sylvain Routier2, Robert Walczak1.   

Abstract

A high throughput screen was developed to identify novel, nonsteroidal RORα agonists. Among the validated hit compounds, the 4-(4-(benzyloxy)phenyl)-5-carbonyl-2-oxo-1,2,3,4-tetrahydropyrimidine scaffold was the most prominent. Among the numerous analogues tested, compounds 8 and 9 showed the highest activity. Key structure-activity relationships (SAR) were established, where benzyl and urea moieties were both identified as very important elements to maintain the activity. Most notably, the SAR were consistent with the binding mode of the compound 8 (S-isomer) in the RORα docking model that was developed in this program. As predicted by the model, the urea moiety is engaged in the formation of key hydrogen bonds with the backbone of Tyr380 and Asp382. The benzyl group is located in a wide hydrophobic pocket. The structural relationships reported in this letter will help in further optimization of this compound series and will provide novel synthetic probes helpful for elucidation of complex RORα physiopathology.

Entities:  

Keywords:  Biginelli; NR1F1; RORα; SAR; agonist; docking

Year:  2013        PMID: 24900700      PMCID: PMC4027490          DOI: 10.1021/ml300471d

Source DB:  PubMed          Journal:  ACS Med Chem Lett        ISSN: 1948-5875            Impact factor:   4.345


  16 in total

1.  X-ray structure of the hRORalpha LBD at 1.63 A: structural and functional data that cholesterol or a cholesterol derivative is the natural ligand of RORalpha.

Authors:  Joerg A Kallen; Jean-Marc Schlaeppi; Francis Bitsch; Sabine Geisse; Martin Geiser; Isabelle Delhon; Brigitte Fournier
Journal:  Structure       Date:  2002-12       Impact factor: 5.006

2.  Staggerer, a new mutation in the mouse affecting the cerebellum.

Authors:  R L SIDMAN; P W LANE; M M DICKIE
Journal:  Science       Date:  1962-08-24       Impact factor: 47.728

3.  Glide: a new approach for rapid, accurate docking and scoring. 1. Method and assessment of docking accuracy.

Authors:  Richard A Friesner; Jay L Banks; Robert B Murphy; Thomas A Halgren; Jasna J Klicic; Daniel T Mainz; Matthew P Repasky; Eric H Knoll; Mee Shelley; Jason K Perry; David E Shaw; Perry Francis; Peter S Shenkin
Journal:  J Med Chem       Date:  2004-03-25       Impact factor: 7.446

Review 4.  Retinoid-related orphan receptor alpha and the regulation of lipid homeostasis.

Authors:  Rebecca L Fitzsimmons; Patrick Lau; George E O Muscat
Journal:  J Steroid Biochem Mol Biol       Date:  2011-06-23       Impact factor: 4.292

Review 5.  RORalpha, a key to the development and functioning of the brain.

Authors:  Sarah Jolly; Nathalie Journiac; Béatrice Vernet-der Garabedian; Jean Mariani
Journal:  Cerebellum       Date:  2012-06       Impact factor: 3.847

6.  staggerer phenotype in retinoid-related orphan receptor alpha-deficient mice.

Authors:  M Steinmayr; E André; F Conquet; L Rondi-Reig; N Delhaye-Bouchaud; N Auclair; H Daniel; F Crépel; J Mariani; C Sotelo; M Becker-André
Journal:  Proc Natl Acad Sci U S A       Date:  1998-03-31       Impact factor: 11.205

7.  Design and synthesis of 6-methyl-2-oxo-1,2,3,4-tetrahydro-pyrimidine-5-carboxylic acid derivatives as PPARgamma activators.

Authors:  Rakesh Kumar; Amit Mittal; Uma Ramachandran
Journal:  Bioorg Med Chem Lett       Date:  2007-05-31       Impact factor: 2.823

8.  Modulation of retinoic acid receptor-related orphan receptor alpha and gamma activity by 7-oxygenated sterol ligands.

Authors:  Yongjun Wang; Naresh Kumar; Laura A Solt; Timothy I Richardson; Leah M Helvering; Christine Crumbley; Ruben D Garcia-Ordonez; Keith R Stayrook; Xi Zhang; Scott Novick; Michael J Chalmers; Patrick R Griffin; Thomas P Burris
Journal:  J Biol Chem       Date:  2009-12-04       Impact factor: 5.157

9.  Absence of the SRC-2 coactivator results in a glycogenopathy resembling Von Gierke's disease.

Authors:  Atul R Chopra; Jean-Francois Louet; Pradip Saha; Jie An; Franco Demayo; Jianming Xu; Brian York; Saul Karpen; Milton Finegold; David Moore; Lawrence Chan; Christopher B Newgard; Bert W O'Malley
Journal:  Science       Date:  2008-11-28       Impact factor: 47.728

10.  Disruption of the nuclear hormone receptor RORalpha in staggerer mice.

Authors:  B A Hamilton; W N Frankel; A W Kerrebrock; T L Hawkins; W FitzHugh; K Kusumi; L B Russell; K L Mueller; V van Berkel; B W Birren; L Kruglyak; E S Lander
Journal:  Nature       Date:  1996-02-22       Impact factor: 49.962

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  3 in total

Review 1.  Current progress in asymmetric Biginelli reaction: an update.

Authors:  Majid M Heravi; Razieh Moradi; Leyla Mohammadkhani; Borzou Moradi
Journal:  Mol Divers       Date:  2018-06-23       Impact factor: 2.943

2.  Discovery and structural optimization of 4-(4-(benzyloxy)phenyl)-3,4-dihydropyrimidin-2(1H)-ones as RORc inverse agonists.

Authors:  Xi-Shan Wu; Rui Wang; Yan-Li Xing; Xiao-Qian Xue; Yan Zhang; Yong-Zhi Lu; Yu Song; Xiao-Yu Luo; Chun Wu; Yu-Lai Zhou; Jian-Qin Jiang; Yong Xu
Journal:  Acta Pharmacol Sin       Date:  2016-07-04       Impact factor: 6.150

3.  Retinoic acid receptor-related orphan receptor α reduces lipid droplets by upregulating neutral cholesterol ester hydrolase 1 in macrophages.

Authors:  Hiroshi Matsuoka; Riki Tokunaga; Miyu Katayama; Yuichiro Hosoda; Kaoruko Miya; Kento Sumi; Ami Ohishi; Jun Kamishikiryo; Akiho Shima; Akihiro Michihara
Journal:  BMC Mol Cell Biol       Date:  2020-04-22
  3 in total

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