Literature DB >> 24894381

"Is macromolecular crowding overlooked?"--Effects of volume exclusion on DNA-amino acids complexes and their reconstitutes.

Priyanka D Pal1, Prabhakar M Dongre, Arunkumar V Chitre.   

Abstract

Biological macromolecules evolve and function within intracellular environments that are crowded with other macromolecules. Crowding results in surprisingly large quantitative effects on both the rates and the equilibria of interactions involving macromolecules, but such interactions are commonly studied outside the cell in uncrowded buffers. The addition of high concentrations of natural and synthetic macromolecules to such buffers enables crowding to be mimicked in vitro, and should be encouraged as a routine variable to study. In this study, we propose to understand the changes in DNA character and its modulation in presence of macromolecules such as PEG with reference to binding parameters to amino acids using fluorescence enhancement.

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Year:  2014        PMID: 24894381     DOI: 10.1007/s10895-014-1412-1

Source DB:  PubMed          Journal:  J Fluoresc        ISSN: 1053-0509            Impact factor:   2.217


  8 in total

Review 1.  Macromolecular crowding: obvious but underappreciated.

Authors:  R J Ellis
Journal:  Trends Biochem Sci       Date:  2001-10       Impact factor: 13.807

2.  The interaction of quinacrine with adenine nucleotides.

Authors:  J L IRVIN; E M IRVIN
Journal:  J Biol Chem       Date:  1954-09       Impact factor: 5.157

Review 3.  Effects of molecular crowding on the structures, interactions, and functions of nucleic acids.

Authors:  Shu-ichi Nakano; Daisuke Miyoshi; Naoki Sugimoto
Journal:  Chem Rev       Date:  2013-12-23       Impact factor: 60.622

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Authors:  S B Zimmerman; A P Minton
Journal:  Annu Rev Biophys Biomol Struct       Date:  1993

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Authors:  S B Zimmerman; L D Murphy
Journal:  FEBS Lett       Date:  1996-07-29       Impact factor: 4.124

Review 6.  Macromolecular crowding effects on macromolecular interactions: some implications for genome structure and function.

Authors:  S B Zimmerman
Journal:  Biochim Biophys Acta       Date:  1993-11-16

7.  Model nucleoprotein complexes: studies on the interaction of cationic homopolypeptides with DNA.

Authors:  D E Olins; A L Olins; P H Von Hippel
Journal:  J Mol Biol       Date:  1967-03-14       Impact factor: 5.469

8.  Effects of macromolecular crowding on genetic networks.

Authors:  Marco J Morelli; Rosalind J Allen; Pieter Rein ten Wolde
Journal:  Biophys J       Date:  2011-12-20       Impact factor: 4.033

  8 in total
  2 in total

Review 1.  Calcific Aortic Valve Disease: Part 1--Molecular Pathogenetic Aspects, Hemodynamics, and Adaptive Feedbacks.

Authors:  Ares Pasipoularides
Journal:  J Cardiovasc Transl Res       Date:  2016-02-18       Impact factor: 4.132

2.  Implications of Volume Exclusion: A Look at Thermodynamic Perspective of DNA-Hemoglobin Complexes and Their Reconstitutes Under Macromolecular Crowding.

Authors:  Priyanka D Pal; Prabhakar M Dongre; Arunkumar V Chitre
Journal:  J Fluoresc       Date:  2015-11-10       Impact factor: 2.217

  2 in total

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