| Literature DB >> 24892089 |
Cecilia Leal-Ramirez1, Hector Echavarria-Heras1.
Abstract
Despite the ecological importance of eelgrass, nowadays anthropogenic influences have produced deleterious effects in many meadows worldwide. Transplantation plots are commonly used as a feasible remediation scheme. The characterization of eelgrass biomass and its dynamics is an important input for the assessment of the overall status of both natural and transplanted populations. Particularly, in restoration plots it is desirable to obtain nondestructive assessments of these variables. Allometric models allow the expression of above ground biomass and productivity of eelgrass in terms of leaf area, which provides cost effective and nondestructive assessments. Leaf area in eelgrass can be conveniently obtained by the product of associated length and width. Although these variables can be directly measured on most sampled leaves, digital image methods could be adapted in order to simplify measurements. Nonetheless, since width to length ratios in eelgrass leaves could be even negligible, noise induced by leaf humidity content could produce misidentification of pixels along the peripheral contour of leaves images. In this paper, we present a procedure aimed to produce consistent estimations of eelgrass leaf area in the presence of the aforementioned noise effects. Our results show that digital image procedures can provide reliable, nondestructive estimations of eelgrass leaf area.Entities:
Mesh:
Year: 2014 PMID: 24892089 PMCID: PMC4032729 DOI: 10.1155/2014/786896
Source DB: PubMed Journal: ScientificWorldJournal ISSN: 1537-744X
Different symbols used in the digital image processing method.
| Symbol | Description |
|---|---|
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| Leaf length |
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| Leaf width |
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| Number of colors in a format of a digital image |
| ST( | Interval of Tolerance of Similarity |
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| Maximum observed leaf length |
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| Norm of the partition for the interval [0, |
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| Partition interval of the form [ |
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| Collection of |
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| Group of leaves whose lenghts ( |
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| Number of leaves in the group |
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| Collection of all groups |
Symbols for observed, digitally obtained variables and related averages.
| Description | Observed data | Digital data | Monte Carlo data |
|---|---|---|---|
| Leaf length ( |
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| — |
| Leaf width ( |
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| — |
| Leaf area ( |
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| Length of the |
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| — |
| Width of the |
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| — |
| Area of the |
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| Average length of the leaves in group |
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| — |
| Average width of the leaves in group |
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| — |
| Average area of the leaves in group |
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Approximation errors.
| Symbols | Formal expression | Description |
|---|---|---|
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| Difference of observed and image obtained leaf lengths in group |
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| Difference of observed and image obtained leaf widths in group |
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| Difference of observed and image obtained leaf areas in group |
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| Difference of observed and Monte Carlo estimated leaf areas in group |
Estimation errors for observed and image obtained variables averages and standard deviations.
| Symbol | Formal expression | Description |
|---|---|---|
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| Leaf length average deviation in the group |
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| Leaf width average deviation in the group |
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| Leaf area average deviation in the group |
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| Leaf length average deviation in |
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| Leaf width average deviation in |
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| Standard deviation of |
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| Standard deviation of |
Auxiliary statistics λ , λ , θ , θ , λ , β , λ and β used to obtain the set of leaves with estimation errors in range for a reliable estimation.
| Symbol | Description | Reference equation |
|---|---|---|
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| Proportion of leaves in | ( |
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| Proportion of leaves in | ( |
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| Proportion of leaves in | ( |
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| Proportion of leaves in | ( |
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| Proportion of leaves in | ( |
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| Proportion of leaves in | ( |
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| Proportion | ( |
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| Proportion | ( |
Numbers n of whole leaves classified in groups G (l) formed by leaf sizes varying in corresponding length intervals I .
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|---|---|---|---|---|---|
| 1 | [0, 10) | 10 | 24 | [230, 240) | 24 |
| 2 | [10, 20) | 43 | 25 | [240, 250) | 23 |
| 3 | [20, 30) | 38 | 26 | [250, 260) | 15 |
| 4 | [30, 40) | 38 | 27 | [260, 270) | 21 |
| 5 | [40, 50) | 32 | 28 | [270, 280) | 16 |
| 6 | [50, 60) | 37 | 29 | [280, 290) | 12 |
| 7 | [60, 70) | 43 | 30 | [290, 300) | 10 |
| 8 | [70, 80) | 32 | 31 | [300, 310) | 9 |
| 9 | [80, 90) | 34 | 32 | [310, 320) | 9 |
| 10 | [90, 100) | 38 | 33 | [320, 330) | 4 |
| 11 | [100, 110) | 28 | 34 | [330, 340) | 7 |
| 12 | [110, 120) | 40 | 35 | [340, 350) | 3 |
| 13 | [120, 130) | 28 | 36 | [350, 360) | 4 |
| 14 | [130, 140) | 29 | 37 | [360, 370) | 3 |
| 15 | [140, 150) | 19 | 38 | [370, 380) | 3 |
| 16 | [150, 160) | 27 |
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| 17 | [160, 170) | 19 |
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| 18 | [170, 180) | 14 |
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| 19 | [180, 190) | 17 |
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| 20 | [190, 200) | 21 |
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| 21 | [200, 210) | 19 |
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| 22 | [210, 220) | 20 |
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| 23 | [220, 230) | 14 |
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Direct comparison statistics for different ST(x) range values.
| ST( |
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|---|---|---|---|---|---|---|---|---|
| ST(68) | 0.4493 | 0.2721 | 24.0157 | 23.6548 | 0.0161 | 0.1038 | 0.9839 | 0.8962 |
| ST(128) | 0.2599 | 0.2576 | 5.0342 | 13.7282 | 0.0049 | 0.0445 | 0.9951 | 0.9555 |
| ST(192) | −0.1291 | 0.2496 | 3.8965 | 12.9700 | 0.0049 | 0.1669 | 0.9951 | 0.8331 |
Proportions of overestimation and underestimation of leaf area and selection index values for a given ST(x) range.
| ST( |
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| IS |
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| IS |
|---|---|---|---|---|---|---|
| ST(68) | 0.6820 | 0.3180 | 0.4662 | 0.6666 | 0.3344 | 0.5016 |
| ST(128) | 0.7005 | 0.2995 | 0.4275 | 0.7197 | 0.2803 | 0.3894 |
| ST(192) | 0.4982 | 0.5018 | 1.0072 | 0.4917 | 0.5083 | 1.0337 |
Figure 1(a) Comparison of observed and image estimated width averages taken over groups G (l). (b) Comparison of observed and image estimated length averages taken over groups G (l) (see Table 6). The values obtained from digitized leaves were estimated by using ST(68).
Figure 2(a) Comparison of observed and image estimated width averages taken over groups G (l). (b) Comparison of observed and image estimated length averages taken over groups G (l) (see Table 6). The values obtained from digitized leaves were estimated by using ST(68). The values obtained from digitized leaves were estimated by using ST(128).
Figure 3(a) Comparison of observed and image estimated width averages taken over groups G (l). (b) Comparison of observed and image estimated length averages taken over groups G (l) (see Table 6). The values obtained from digitized leaves were estimated by using ST(68). The values obtained from digitized leaves were estimated by using ST(192).
RMSD calculated by using observed versus image calculated variables.
| ST( | RMSD( | RMSD( | RMSD( | RMSD( |
|---|---|---|---|---|
| ST(68) | 0.4590 | 26.4500 | 360.8746 | 151.2869 |
| ST(128) | 0.4016 | 12.9587 | 99.1725 | 90.6759 |
| ST(192) | 0.7303 | 10.8674 | 155.3371 | 160.6715 |