Literature DB >> 24889635

Pathway for Mn-cluster oxidation by tyrosine-Z in the S2 state of photosystem II.

Daniele Narzi1, Daniele Bovi1, Leonardo Guidoni2.   

Abstract

Water oxidation in photosynthetic organisms occurs through the five intermediate steps S0-S4 of the Kok cycle in the oxygen evolving complex of photosystem II (PSII). Along the catalytic cycle, four electrons are subsequently removed from the Mn4CaO5 core by the nearby tyrosine Tyr-Z, which is in turn oxidized by the chlorophyll special pair P680, the photo-induced primary donor in PSII. Recently, two Mn4CaO5 conformations, consistent with the S2 state (namely, S2(A) and S2(B) models) were suggested to exist, perhaps playing a different role within the S2-to-S3 transition. Here we report multiscale ab initio density functional theory plus U simulations revealing that upon such oxidation the relative thermodynamic stability of the two previously proposed geometries is reversed, the S2(B) state becoming the leading conformation. In this latter state a proton coupled electron transfer is spontaneously observed at ∼100 fs at room temperature dynamics. Upon oxidation, the Mn cluster, which is tightly electronically coupled along dynamics to the Tyr-Z tyrosyl group, releases a proton from the nearby W1 water molecule to the close Asp-61 on the femtosecond timescale, thus undergoing a conformational transition increasing the available space for the subsequent coordination of an additional water molecule. The results can help to rationalize previous spectroscopic experiments and confirm, for the first time to our knowledge, that the water-splitting reaction has to proceed through the S2(B) conformation, providing the basis for a structural model of the S3 state.

Entities:  

Keywords:  QM/MM; molecular dynamics; photosynthesis; reaction mechanisms

Mesh:

Substances:

Year:  2014        PMID: 24889635      PMCID: PMC4066536          DOI: 10.1073/pnas.1401719111

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  57 in total

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3.  Theoretical evaluation of structural models of the S2 state in the oxygen evolving complex of Photosystem II: protonation states and magnetic interactions.

Authors:  William Ames; Dimitrios A Pantazis; Vera Krewald; Nicholas Cox; Johannes Messinger; Wolfgang Lubitz; Frank Neese
Journal:  J Am Chem Soc       Date:  2011-11-17       Impact factor: 15.419

4.  Where water is oxidized to dioxygen: structure of the photosynthetic Mn4Ca cluster.

Authors:  Junko Yano; Jan Kern; Kenneth Sauer; Matthew J Latimer; Yulia Pushkar; Jacek Biesiadka; Bernhard Loll; Wolfram Saenger; Johannes Messinger; Athina Zouni; Vittal K Yachandra
Journal:  Science       Date:  2006-11-03       Impact factor: 47.728

5.  An energetic comparison of different models for the oxygen evolving complex of photosystem II.

Authors:  Per E M Siegbahn
Journal:  J Am Chem Soc       Date:  2009-12-30       Impact factor: 15.419

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7.  The artificial leaf.

Authors:  Daniel G Nocera
Journal:  Acc Chem Res       Date:  2012-04-04       Impact factor: 22.384

8.  Oxygen-evolving Mn cluster in photosystem II: the protonation pattern and oxidation state in the high-resolution crystal structure.

Authors:  Artur Galstyan; Arturo Robertazzi; Ernst Walter Knapp
Journal:  J Am Chem Soc       Date:  2012-04-23       Impact factor: 15.419

9.  In situ formation of an oxygen-evolving catalyst in neutral water containing phosphate and Co2+.

Authors:  Matthew W Kanan; Daniel G Nocera
Journal:  Science       Date:  2008-07-31       Impact factor: 47.728

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Authors:  Per E M Siegbahn
Journal:  Acc Chem Res       Date:  2009-12-21       Impact factor: 22.384

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  12 in total

Review 1.  Artificial photosynthesis: understanding water splitting in nature.

Authors:  Nicholas Cox; Dimitrios A Pantazis; Frank Neese; Wolfgang Lubitz
Journal:  Interface Focus       Date:  2015-06-06       Impact factor: 3.906

2.  Five-coordinate MnIV intermediate in the activation of nature's water splitting cofactor.

Authors:  Maria Chrysina; Eiri Heyno; Yury Kutin; Michael Reus; Håkan Nilsson; Marc M Nowaczyk; Serena DeBeer; Frank Neese; Johannes Messinger; Wolfgang Lubitz; Nicholas Cox
Journal:  Proc Natl Acad Sci U S A       Date:  2019-08-07       Impact factor: 11.205

3.  Structural isomers of the S2 state in photosystem II: do they exist at room temperature and are they important for function?

Authors:  Ruchira Chatterjee; Louise Lassalle; Sheraz Gul; Franklin D Fuller; Iris D Young; Mohamed Ibrahim; Casper de Lichtenberg; Mun Hon Cheah; Athina Zouni; Johannes Messinger; Vittal K Yachandra; Jan Kern; Junko Yano
Journal:  Physiol Plant       Date:  2019-03-15       Impact factor: 4.500

4.  Removal of Ca(2+) from the Oxygen-Evolving Complex in Photosystem II Has Minimal Effect on the Mn4O5 Core Structure: A Polarized Mn X-ray Absorption Spectroscopy Study.

Authors:  Thomas Lohmiller; Megan L Shelby; Xi Long; Vittal K Yachandra; Junko Yano
Journal:  J Phys Chem B       Date:  2015-06-03       Impact factor: 2.991

5.  Structural rearrangements preceding dioxygen formation by the water oxidation complex of photosystem II.

Authors:  Han Bao; Robert L Burnap
Journal:  Proc Natl Acad Sci U S A       Date:  2015-10-27       Impact factor: 11.205

6.  O2 evolution and recovery of the water-oxidizing enzyme.

Authors:  Keisuke Kawashima; Tomohiro Takaoka; Hiroki Kimura; Keisuke Saito; Hiroshi Ishikita
Journal:  Nat Commun       Date:  2018-03-28       Impact factor: 14.919

7.  Interaction of methanol with the oxygen-evolving complex: atomistic models, channel identification, species dependence, and mechanistic implications.

Authors:  Marius Retegan; Dimitrios A Pantazis
Journal:  Chem Sci       Date:  2016-07-05       Impact factor: 9.825

8.  Metal oxidation states in biological water splitting.

Authors:  Vera Krewald; Marius Retegan; Nicholas Cox; Johannes Messinger; Wolfgang Lubitz; Serena DeBeer; Frank Neese; Dimitrios A Pantazis
Journal:  Chem Sci       Date:  2015-01-09       Impact factor: 9.825

9.  Proton Translocation via Tautomerization of Asn298 During the S2-S3 State Transition in the Oxygen-Evolving Complex of Photosystem II.

Authors:  Maria Chrysina; Juliana Cecília de Mendonça Silva; Georgia Zahariou; Dimitrios A Pantazis; Nikolaos Ioannidis
Journal:  J Phys Chem B       Date:  2019-03-29       Impact factor: 2.991

10.  A five-coordinate Mn(iv) intermediate in biological water oxidation: spectroscopic signature and a pivot mechanism for water binding.

Authors:  Marius Retegan; Vera Krewald; Fikret Mamedov; Frank Neese; Wolfgang Lubitz; Nicholas Cox; Dimitrios A Pantazis
Journal:  Chem Sci       Date:  2015-11-17       Impact factor: 9.825

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