| Literature DB >> 24886809 |
Victoriano Pérez-Vázquez1, Juan M Guzmán-Flores2, Daniela Mares-Álvarez3, Magdalena Hernández-Ortiz4, Maciste H Macías-Cervantes5, Joel Ramírez-Emiliano6, Sergio Encarnación-Guevara7.
Abstract
Type 2 diabetes mellitus is characterized by hyperglycemia and insulin-resistance. Diabetes results from pancreatic inability to secrete the insulin needed to overcome this resistance. We analyzed the protein profile from the pancreas of ten-week old diabetic db/db and wild type mice through proteomics. Pancreatic proteins were separated in two-dimensional polyacrylamide gel electrophoresis (2D-PAGE) and significant changes in db/db mice respect to wild type mice were observed in 27 proteins. Twenty five proteins were identified by matrix-assisted laser desorption/ionization (MALDI) time-of-flight (TOF) and their interactions were analyzed using search tool for the retrieval of interacting genes/proteins (STRING) and database for annotation, visualization and integrated discovery (DAVID). Some of these proteins were Pancreatic α-amylase, Cytochrome b5, Lithostathine-1, Lithostathine-2, Chymotrypsinogen B, Peroxiredoxin-4, Aspartyl aminopeptidase, Endoplasmin, and others, which are involved in the metabolism of carbohydrates and proteins, as well as in oxidative stress, and inflammation. Remarkably, these are mostly endoplasmic reticulum proteins related to peptidase activity, i.e., they are involved in proteolysis, glucose catabolism and in the tumor necrosis factor-mediated signaling pathway. These results suggest mechanisms for insulin resistance, and the chronic inflammatory state observed in diabetes.Entities:
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Year: 2014 PMID: 24886809 PMCID: PMC4100111 DOI: 10.3390/ijms15069579
Source DB: PubMed Journal: Int J Mol Sci ISSN: 1422-0067 Impact factor: 5.923
Figure 1Two-dimensional electrophoresis (2-DE) image of the pancreas of control (A) and db/db (B) mouse. Proteins were separated by isoelectric focusing (IEF) in the first dimension, pH 3–10 enriched in range from 4–8, then by size in the second dimension. Spots found with differential expression are marked in the gels. A: □, proteins presents only in control mice and, ▽, diminished proteins in db/db mice; B: △, increased proteins in db/db mice and, O spots found only in db/db mice.
Proteins identified differentially expressed in the mouse pancreas db/db.
| Spot number | Protein | Gene name | UniProt accession number | Molecular mass (kD) | Peptide matched | Mascot score | Sequence coverage (%) | Fold change |
|---|---|---|---|---|---|---|---|---|
| 111 | Cytochrome b5 | P56395 | 15.232 | 6 | 84 | 49 | +2.39 | |
| 106 | Lithostathine 1 | P43137 | 18.906 | 9 | 132 | 55 | +2.38 | |
| 110 | Lithostathine-2 | Q08731 | 19.793 | 7 | 109 | 52 | +2.51 | |
| 610 | Prss3 protein | Q4G0C2 | 26.643 | 7 | 74 | 24 | +2.8 | |
| 618 | Chymotrypsinogen B | Q9CR35 | 28.585 | 8 | 89 | 42 | a | |
| 619 | Trypsinogen 11 | Q792Z0 | 268.88 | 7 | 80 | 31 | a | |
| 158 | Chymotrypsinogen B precursor | Q9CR35 | 28.585 | 5 | 78 | 31 | +1.55 | |
| 143 | Trypsin 5 precursor | Q9QUK9 | 27.112 | 9 | 80 | 31 | +2.41 | |
| 142 | Trypsin 5 precursor | Q9QUK9 | 27.112 | 10 | 111 | 31 | +1.71 | |
| 146 | 6-Phosphogluconolactonase | Q9CQ60 | 27.522 | 8 | 112 | 43 | +2.07 | |
| 141 | Peroxiredoxin-4 precursor | O08807 | 31.317 | 9 | 131 | 43 | +1.6 | |
| 145 | Phosphoglycerate mutase 1 | Q9DBJ1 | 28.956 | 11 | 131 | 55 | +2.2 | |
| 166 | Ela3 protein, partial | A2A9U8 | 28.321 | 7 | 83 | 29 | +2.25 | |
| 616 | Ela3 protein, partial | A2A9U8 | 28.321 | 7 | 102 | 47 | a | |
| 170 | Ela3 protein, partial | A2A9U8 | 28.321 | 10 | 129 | 68 | +1.63 | |
| 3 | Kallikrein | P15947 | 29.495 | 8 | 97 | 37 | +1.68 | |
| 258 | Protein MYG1, mitochondrial | Q9JK81 | 43.095 | 7 | 74 | 24 | +1.81 | |
| 284 | Pancreatic Carboxypeptidase B1 precursor | B2RS76 | 48.041 | 15 | 204 | 48 | +2.25 | |
| 305 | Carboxypeptidase A2, pancreatic, isoform CRA_b | Q504N0 | 37.185 | 10 | 99 | 26 | +1.98 | |
| 620 | Aspartyl aminopeptidase | Q9Z2W0 | 52.744 | 9 | 69 | 17 | b | |
| 621 | Endoplasmin | P08113 | 92.703 | 13 | 112 | 13 | b | |
| 555 | Endoplasmin | P08113 | 92.998 | 20 | 174 | 25 | −2.04 | |
| 532 | Transitional endoplasmic reticulum ATPase | Q01853 | 89.950 | 15 | 113 | 16 | −1.5 | |
| 368 | Keratin, type II cytoskeletal 8 | P11679 | 54.531 | 24 | 205 | 47 | −1.99 | |
| 16 | Pancreatic alpha-amylase | P00688 | 57.966 | 8 | 89 | 21 | −1.83 |
a, Protein spots 616, 618 and 619 exist only in db/db mice; b, Protein spots 620 and 621 exist only in control mice.
Figure 2Bioinformatics analysis by Search Tool for the Retrieval of Interacting Genes/Proteins. The list of the identified protein was subjected to String (v. 9.05) analysis to reveal functional interactions between the deregulated proteins. Each node represents a protein, and each edge represents an interaction. The original graphic output was modified to fit the proteins, according to their classification under the gene ontology descriptors “Cellular Component”: endoplasmic reticulum (confined within the red circle) and “Molecular Function”: peptidases activity (confined within the black circle) as revealed by the Database for Annotation, Visualization and Integrated Discovery (DAVID) (v. 6.7) annotation system.
Figure 3Bioinformatics analysis by String. The list of the identified proteins was subjected to String (v. 9.05) analysis to reveal functional interactions between the deregulated proteins. Each node represents a protein, and each edge represents an interaction. The original graphic output was modified to fit the proteins, according to their classification under the gene ontology descriptor “Biological Process”: proteolysis (confined within the red circle), glucose catabolic process (confined within the black circle) and tumor necrosis factor-mediated signaling pathway (confined within the blue circle) as revealed by the DAVID (v. 6.7) annotation system.