| Literature DB >> 24886180 |
Qiliu Peng, Zhiping Chen, Yu Lu, Xianjun Lao, Cuiju Mo, Ruolin Li, Xue Qin1, Shan Li.
Abstract
BACKGROUND: Reduced DNA repair capacities due to inherited polymorphisms may increase the susceptibility to cancers including gastric cancer. Previous studies investigating the association between Xeroderma Pigmentosum group C (XPC) gene polymorphisms and gastric cancer risk reported inconsistent results. We performed a meta-analysis to summarize the possible association.Entities:
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Year: 2014 PMID: 24886180 PMCID: PMC4053311 DOI: 10.1186/1746-1596-9-96
Source DB: PubMed Journal: Diagn Pathol ISSN: 1746-1596 Impact factor: 2.644
Scale for quality assessment
| Representativeness of cases | |
| Selected from cancer registry or multiple cancer center sites | 2 |
| Selected from oncology department or cancer institute | 1 |
| Selected without clearly defined sampling frame or with extensive inclusion/exclusion criteria | 0 |
| Source of controls | |
| Population or community based | 2 |
| Both population-based and hospital-based/healthy volunteers/blood donors | 1.5 |
| Hospital-based controls without gastric cancer | 1 |
| Cancer-free controls without total description | 0.5 |
| Not described | 0 |
| Ascertainment of gastric cancer | |
| Histologically or pathologically confirmed | 2 |
| Diagnosis of gastric cancer by patient medical record | 1 |
| Not described | 0 |
| Sample size | |
| >1000 | 2 |
| 200-1000 | 1 |
| <200 | 0 |
| Quality control of genotyping methods | |
| Clearly described a different genotyping assay to confirm the data | 1 |
| Not described | 0 |
| Hardy-Weinberg equilibrium | |
| Hardy-Weinberg equilibrium in controls | 1 |
| Hardy-Weinberg disequilibrium in controls | 0.5 |
| No checking for Hardy-Weinberg disequilibrium | 0 |
Characteristics of studies included in the meta-analysis
| Palli 2010 | Italy | Caucasian | 306/547 | TaqMan | Gender | PB | Histo- | PAT+/− | — | — | 0.085 | 7 |
| Dong 2008 | China | Asian | 253/612 | PCR-RFLP | Age and gender | PB | Histopatho- | Lys939Gln, Ala499Val, PAT+/− | 0.699 | 0.217 | 0.786 | 8.5 |
| Engin 2011 | Turkey | Caucasian | 106/116 | PCR-RFLP | Age and BMI | HB | NR | Lys939Gln | 0.642 | — | — | 4.5 |
| Long 2010 | China | Asian | 361/616 | TaqMan | Age, gender, ethnicity, smoking, and drinking | HB | Histopatho- | Lys939Gln, Ala499Val | 0.446 | 0.673 | — | 6 |
| Ye 2006 | Sweden | Caucasian | 126/472 | PCR-RFLP | NR | PB | Histo- | Lys939Gln | 0.540 | — | — | 7 |
| Li 2010 | China | Asian | 203/210 | PCR-RFLP | Age, gender, smoking, and drinking | HB | Patho- | Lys939Gln, Ala499Val | 0.173 | 0.462 | — | 7.5 |
GC, Gastric cancer; Histopatho-, Histopathologically confirmed; Histo-, Histologically confirmed; Patho-, Pathologically confirmed; NR, Not reported; PB, Population–based; HB, Hospital–based; HWE, Hardy–Weinberg equilibrium in control population; PCR–RFLP, Polymerase chain reaction-restriction fragment length polymorphism; BMI, Body mass index.
Meta-analysis of the XPC polymorphisms and gastric cancer risk
| Lys939Gln | | | | | | | | | |
| Gln/Gln vs. Lys/lys | Overall | 5 | 1.123 | 0.881-1.431 | 0.349 | F | 2.69 | 0.612 | 0.0 |
| | Caucasian | 2 | 1.016 | 0.490-2.109 | 0.965 | F | 2.31 | 0.128 | 46.8 |
| | Asian | 3 | 1.140 | 0.857-1.516 | 0.368 | F | 0.34 | 0.843 | 0.0 |
| | PB | 2 | 1.260 | 0.877-1.810 | 0.212 | F | 0.24 | 0.623 | 0.0 |
| | HB | 3 | 1.026 | 0.741-1.420 | 0.879 | F | 1.76 | 0.414 | 0.0 |
| | High quality | 3 | 1.179 | 0.860-1.616 | 0.308 | F | 0.75 | 0.686 | 0.0 |
| | Low quality | 2 | 1.048 | 0.718-1.530 | 0.807 | F | 1.71 | 0.191 | 41.6 |
| Gln/Lys vs. Lys/lys | Overall | 5 | 1.083 | 0.917-1.277 | 0.347 | F | 1.21 | 0.876 | 0.0 |
| | Caucasian | 2 | 0.993 | 0.689-1.432 | 0.972 | F | 0.87 | 0.352 | 0.0 |
| | Asian | 3 | 1.107 | 0.919-1.332 | 0.284 | F | 0.08 | 0.962 | 0.0 |
| | PB | 2 | 1.026 | 0.795-1.324 | 0.846 | F | 0.64 | 0.424 | 0.0 |
| | HB | 3 | 1.126 | 0.906-1.400 | 0.285 | F | 0.27 | 0.872 | 0.0 |
| | High quality | 3 | 1.062 | 0.855-1.319 | 0.587 | F | 0.90 | 0.639 | 0.0 |
| | Low quality | 2 | 1.112 | 0.861-1.437 | 0.417 | F | 0.24 | 0.628 | 0.0 |
| Gln/Gln + Gln/Lys vs. Lys/lys | Overall | 5 | 1.092 | 0.933-1.277 | 0.273 | F | 0.24 | 0.994 | 0.0 |
| | Caucasian | 2 | 1.015 | 0.720-1.430 | 0.933 | F | 0.01 | 0.906 | 0.0 |
| | Asian | 3 | 1.113 | 0.933-1.327 | 0.235 | F | 0.00 | 0.998 | 0.0 |
| | PB | 2 | 1.076 | 0.846-1.369 | 0.551 | F | 0.18 | 0.667 | 0.0 |
| | HB | 3 | 1.103 | 0.897-1.356 | 0.351 | F | 0.03 | 0.986 | 0.0 |
| | High quality | 3 | 1.087 | 0.886-1.333 | 0.424 | F | 0.21 | 0.900 | 0.0 |
| | Low quality | 2 | 1.098 | 0.860-1.401 | 0.453 | F | 0.02 | 0.881 | 0.0 |
| Gln/Gln vs. Gln/Lys + Lys/lys | Overall | 5 | 1.046 | 0.838-1.307 | 0.691 | F | 6.57 | 0.160 | 39.2 |
| | Caucasian | 2 | 0.921 | 0.344-2.468 | 0.870 | F | 5.98 | 0.114 | 43.3 |
| | Asian | 3 | 1.083 | 0.829-1.417 | 0.558 | F | 0.47 | 0.791 | 0.0 |
| | PB | 2 | 1.253 | 0.896-1.751 | 0.187 | F | 0.77 | 0.381 | 0.0 |
| | HB | 3 | 0.914 | 0.680-1.229 | 0.552 | F | 3.90 | 0.142 | 48.8 |
| | High quality | 3 | 1.157 | 0.862-1.553 | 0.331 | F | 1.66 | 0.435 | 0.0 |
| | Low quality | 2 | 0.828 | 0.400-1.712 | 0.610 | F | 3.90 | 0.148 | 44.3 |
| Ala499Val | | | | | | | | | |
| Val/Val vs. Ala/Ala | Asian | 3 | 0.861 | 0.632-1.172 | 0.341 | F | 0.57 | 0.754 | 0.0 |
| Val/Ala vs. Ala/Ala | Asian | 3 | 0.815 | 0.611-1.089 | 0.167 | F | 4.72 | 0.194 | 37.6 |
| Val/Val + Val/Ala vs. Ala/Ala | Asian | 3 | 0.823 | 0.630-1.076 | 0.155 | F | 4.49 | 0.106 | 35.5 |
| Val/Val vs. Val/Ala + Ala/Ala | Asian | 3 | 0.947 | 0.703-1.274 | 0.717 | F | 0.04 | 0.981 | 0.0 |
| PAT−/+ | | | | | | | | | |
| +/+vs. −/− | Overall | 2 | 1.035 | 0.763-1.404 | 0.825 | F | 0.12 | 0.726 | 0.0 |
| +/− vs. −/− | Overall | 2 | 0.855 | 0.681-1.073 | 0.176 | F | 0.00 | 0.975 | 0.0 |
| (+/+) + (+/−) vs. (−/−) | Overall | 2 | 0.896 | 0.724-1.111 | 0.317 | F | 0.05 | 0.830 | 0.0 |
| (+/+) vs. (+/−) + (−/−) | Overall | 2 | 1.141 | 0.871-1.495 | 0.338 | F | 0.20 | 0.652 | 0.0 |
OR, odds ratio; CI, confidence intervals; R, random effects model; F, fixed effects model; PB, Population–based; HB, Hospital–based.
Figure 1Forest plot of subgroup analysis by ethnicity on the association between Lys939Gln polymorphism and gastric cancer risk using a fixed-effect model (dominant model Gln/Gln + Gln/Lys vs. Lys/lys).
Figure 2Sensitivity analysis for XPC Lys939Gln polymorphism and gastric cancer risk (dominant model Gln/Gln + Gln/Lys vs. Lys/lys). This figure shows the influence of individual studies on the summary OR. The middle vertical axis indicates the overall OR and the two vertical axes indicate its 95% CI. Every hollow round indicates the pooled OR when the left study is omitted in this meta-analysis. The two ends of every broken line represent the 95% CI.