| Literature DB >> 24885815 |
Johanna Penell, Lars Lind, Tove Fall, Anne-Christine Syvänen, Tomas Axelsson, Per Lundmark, Andrew P Morris, Cecilia Lindgren, Anubha Mahajan, Samira Salihovic, Bert van Bavel, Erik Ingelsson, P Monica Lind1.
Abstract
BACKGROUND: Since human CYP2B6 has been identified as the major CYP enzyme involved in the metabolism of 2,2',4,4'-tetrabromodiphenyl ether (BDE-47) and that human 2B6 is a highly polymorphic CYP, with known functional variants, we evaluated if circulating concentrations of a major brominated flame retardant, BDE-47, were related to genetic variation in the CYP2B6 gene in a population sample.Entities:
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Year: 2014 PMID: 24885815 PMCID: PMC4024654 DOI: 10.1186/1476-069X-13-34
Source DB: PubMed Journal: Environ Health ISSN: 1476-069X Impact factor: 5.984
Association between SNPs in the gene and circulating lipid-normalized levels of BDE-47
| rs1808682c | 41489448 | A/G | 0.23 | 920 | 0.11 (0.026, 0.19) | 9.5*10-3 |
| rs3760657 | 41495433 | G/A | 0.12 | 924 | 0.16 (0.058, 0.27) | 2.5*10-3 |
| rs2099361 | 41498348 | C/A | 0.36 | 923 | -0.18 (-0.25, -0.11) | 2.8*10-7 |
| rs2014141 | 41499989 | A/G | 0.41 | 924 | -0.21 (-0.28, -0.14) | 4.9*10-9 |
| rs8192711 | 41500057 | A/G | 0.05 | 923 | -0.12 (-0.27, 0.031) | 0.12 |
| rs8100458 | 41500213 | C/T | 0.35 | 924 | 0.17 (0.10, 0.24) | 3.4*10-6 |
| rs4803415 | 41500593 | T/C | 0.10 | 886 | 0.19 (0.08, 0.30) | 6.9*10-4 |
| rs8101756 | 41502522 | C/T | 0.24 | 923 | 0.062 (-0.018, 0.14) | 0.13 |
| rs16974799 | 41504077 | T/C | 0.24 | 924 | 0.062 (-0.018, 0.14) | 0.13 |
| rs4803417 | 41508020 | C/A | 0.41 | 924 | -0.21 (-0.28, -0.14) | 4.9*10-9 |
| rs10500282 | 41508442 | C/T | 0.26 | 923 | 0.087 (0.009, 0.16) | 0.028 |
| rs11672911 | 41508744 | A/G | 0.32 | 924 | 0.17 (0.10, 0.25) | 5.6*10-6 |
| rs2279345 | 41515702 | T/C | 0.39 | 924 | -0.17 (-0.24, -0.10) | 9.6*10-7 |
| rs8192718 | 41515814 | A/G | 0.02 | 924 | -0.099 (-0.39, 0.19) | 0.50 |
| rs6508965 | 41517688 | T/C | 0.39 | 924 | -0.17 (-0.24, -0.10) | 1.1*10-6 |
| rs8192719 | 41518773 | T/C | 0.24 | 924 | 0.066 (-0.012, 0.14) | 0.10 |
| rs11882450 | 41520142 | G/A | 0.06 | 924 | -0.095 (-0.24, 0.052) | 0.20 |
| rs11673270 | 41520844 | C/A | 0.24 | 924 | 0.060 (-0.019, 0.14) | 0.14 |
| rs7260329 | 41521638 | A/G | 0.32 | 924 | 0.17 (0.093, 0.24) | 9. 3*10-6 |
| rs2291287 | 41522451 | G/A | 0.06 | 924 | -0.095 (-0.24, 0.052) | 0.20 |
| rs1042389c | 41524153 | G/A | 0.21 | 923 | 0.040 (-0.041, 0.12) | 0.33 |
| rs1552223 | 41525952 | G/A | 0.39 | 924 | -0.16 (-0.23, -0.092) | 5.0*10-6 |
| rs2113103c | 41528667 | A/G | 0.15 | 924 | 0.076 (-0.018, 0.17) | 0.11 |
| rs7255904c | 41529020 | A/G | 0.45 | 921 | 0.13 (0.059, 0.19) | 2.6*10-4 |
aSNP = single nucleotide polymorphisms.
bMAF = Minor allele frequency.
cSNPs genotyped in Uppsala, others in Oxford.
The position data originates from the UCSC Genome Browser on Human February 2009 (GRCh37/hg19) and allele data originates from the genotyped SNPs included in the study. All SNPs are located on chromosome 19.
Figure 1Association signal plot for SNPs mapping to Each point represents a SNP in the association analysis, plotted with their p-value (on a -log10 scale) as a function of genomic position (NCBI Build 36). The lead SNP (with maximal association signal) is represented by the purple symbol. The shape of the plotting symbol corresponds to the annotation of the SNP: square for synonymous or UTR; and circle for intronic or non-coding. The colour coding of all other SNPs indicates LD with the lead SNP (estimated by CEU r2 from Phase II HapMap): red r2 ≥ 0.8; gold 0.6 ≤ r2 < 0.8; green 0.4 ≤ r2 < 0.6; cyan 0.2 ≤ r2 < 0.4; blue r2 < 0.2; grey r2 unknown. Recombination rates are estimated from Phase II HapMap and gene annotations are taken from the University of California Santa Cruz genome browser.
Figure 2Display over the haplotype structure of the -loci, based on PIVUS genotype data. Darker color corresponds to higher r2 (i.e. correlation) between single nucleotide polymorphisms (SNPs).
Figure 3Proportion of subjects with non-detectable BDE-47 levels according to the rs2014141 genotype in the gene. NAA allele = 163, NAG allele = 457, NGG allele = 329.