| Literature DB >> 24884685 |
Elena Topchiy, Teresa Lehmann1.
Abstract
BACKGROUND: Elegant efforts towards the determination of the structural tendencies of peptides derived from the Plasmodium falciparum circumsporozoite protein allowed the proposal of a left-handed helical conformation for this protein. The use of circular dichroism and Fourier-transformed infrared spectroscopy applied to various peptides derived from this protein, indicated that they bind Ca²⁺ ions in helical environments. The essential role of calcium in cell function and biological mechanisms is well known. It influences the development of several stages of the P. falciparum parasite. However, there is very little knowledge regarding calcium coordination to circumsporozoite proteins. In the present investigation the chelation of Ca²⁺ by the (NANPNVDP)₃NANP peptide, which contains the first seven 4-amino-acid blocks of the repeat region of the P. falciparum circumsporozoite protein, is tested with the use of circular dichroism and nuclear magnetic resonance spectroscopies. Spectroscopy-based solution conformations of the Ca-bound peptide are also determined.Entities:
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Year: 2014 PMID: 24884685 PMCID: PMC4057913 DOI: 10.1186/1475-2875-13-195
Source DB: PubMed Journal: Malar J ISSN: 1475-2875 Impact factor: 2.979
Figure 1Circular dichroism spectra. Titration of 1 with CaCl2 performed to determine at which Ca:1 ratio the reaction between the peptide and the ion is complete.
Figure 2Differences in chemical shifts between 1 and 1 + Ca. A positive bar indicates that the chemical shift of 1 is larger. Values are shown for the α-protons.
Figure 3Overlap of TOCSY spectra. Portion of the overlap of the TOCSY spectra collected for 1 (black) and 1 + Ca (red) displaying the signals generated by D23, D15, V14 and V22 in both NMR samples.
Figure 4Overlap of NOESY spectra. Portions of the overlap of the NOESY spectra collected for 1 (black) and 1 + Ca (red) showing the non-trivial NOEs detected for these peptides.
Conformations for 1 + Ca
| S1/6 | D15, V22, D23, N25, two H20 molecules |
| S2/6 | D15, V14, D23, N25, two H20 molecules |
| S3/6 | D15, V14, D23, N25, V22, one H20 molecule |
| S4/7 | D15 (bidentate coordination), V22, D23, N25, two H20 molecules |
| S5/7 | D15, V22, D23 (bidentate coordination), N25, two H20 molecules |
| S6/7 | D15 (bidentate coordination), V22, D23, N25, V14, one H20 molecule |
| S7/7 | D15, V22, D23 (bidentate coordination), N25, V14, one H20 molecule |
Conformations tested in MD calculations for the peptide 1 + Ca including six- and seven-coordinate calcium ions.
Structure statistics from MD
| | |||||||
|---|---|---|---|---|---|---|---|
| Total | 1707.51 | 1638.72 | 1248.95 | 1709.06 | 1765.77 | 740.28 | 521.86 |
| Constraint | 1066.73 | 1821.45 | 1089.46 | 1204.44 | 1163.43 | 486.12 | 496.99 |
| Angle | 674.57 | 236.04 | 508.17 | 560.38 | 615.02 | 505.06 | 288.13 |
| Dihedral | 252.06 | 160.98 | 181.92 | 187.70 | 199.90 | 164.5 | 155.52 |
| van der Waals | -39.53 | -134.08 | -110.28 | -99.54 | -123.66 | -114.10 | -146.59 |
| Bond | 260.69 | 126.79 | 194.54 | 282.12 | 297.20 | 181.70 | 184.45 |
| Improper | 21.62 | 5.34 | 8.64 | 11.70 | 7.36 | 8.97 | 13.01 |
| Electrostatic | -528.63 | -577.81 | -623.50 | -437.74 | -393.48 | -492.0 | -469.65 |
| Agreement with NOE data (%) | 41 | 38 | 38 | 34 | 47 | 50 | 53 |
Energy terms derived from MD calculations for all the conformations tested for 1 + Ca, and the agreement with NOE data generated through comparisons of the proton-to-proton distances measured for the final structures and the NOE-distance intervals.
Figure 5Peptide conformation S3. Conformation of 1 + Ca with the lowest potential energy value determined with the Ca ion in a six-coordinate environment. (A) Full peptide displaying the Ω-loop involving residues V14-N25. (B) Portion of S3 showing the MD-predicted hydrogen bonds originating the Asx turn between residues D15 and N17, and the γ-turn between residues P24 and A26.
Figure 6Peptide conformation S7. Conformation of 1 + Ca with the lowest potential energy and highest agreement with the NMR data determined with the Ca ion in a seven-coordinate environment. (A) Full peptide displaying the Ω-loop involving residues V14-N25. (B) Portion of S7 showing the MD-predicted hydrogen bonds originating γ-turns between residues N21 and D23, P24 and A26, and P24 and N27.