Literature DB >> 24882733

Ceramide-lipid interactions studied by MD simulations and solid-state NMR.

Bercem Dutagaci1, Johanna Becker-Baldus1, José D Faraldo-Gómez2, Clemens Glaubitz3.   

Abstract

Ceramides play a key modulatory role in many cellular processes, which results from their effect on the structure and dynamics of biological membranes. In this study, we investigate the influence of C16-ceramide (C16) on the biophysical properties of DMPC lipid bilayers using solid-state NMR and atomistic molecular dynamics (MD) simulations. MD simulations and NMR measurements were carried out for a pure DMPC bilayer and for a 20% DMPC-C16 mixture. Calculated key structural properties, namely area per lipid, chain order parameters, and mass density profiles, indicate that C16 has an ordering effect on the DMPC bilayer. Furthermore, the simulations predict that specific hydrogen-bonds form between DMPC and C16 molecules. Multi-nuclear solid-state NMR was used to verify these theoretical predictions. Chain order parameters extracted from (13)C(1)H dipole couplings were measured for both lipid and ceramide and follow the trend suggested by the MD simulations. Furthermore, (1)H-MAS NMR experiments showed a direct contact between ceramide and lipids.
Copyright © 2014 Elsevier B.V. All rights reserved.

Entities:  

Keywords:  Ceramide; DMPC; Lipid raft; MAS NMR; MD simulation

Mesh:

Substances:

Year:  2014        PMID: 24882733      PMCID: PMC4137758          DOI: 10.1016/j.bbamem.2014.05.024

Source DB:  PubMed          Journal:  Biochim Biophys Acta        ISSN: 0006-3002


  44 in total

1.  Detergent-resistant, ceramide-enriched domains in sphingomyelin/ceramide bilayers.

Authors:  Jesús Sot; Luis A Bagatolli; Félix M Goñi; Alicia Alonso
Journal:  Biophys J       Date:  2005-11-11       Impact factor: 4.033

2.  Searching for the molecular arrangement of transmembrane ceramide channels.

Authors:  A Anishkin; S Sukharev; M Colombini
Journal:  Biophys J       Date:  2006-01-13       Impact factor: 4.033

Review 3.  Lipid-lipid interactions in bilayer membranes: married couples and casual liaisons.

Authors:  Peter J Quinn
Journal:  Prog Lipid Res       Date:  2012-02-10       Impact factor: 16.195

4.  Effects of ceramide on liquid-ordered domains investigated by simultaneous AFM and FCS.

Authors:  Salvatore Chiantia; Nicoletta Kahya; Jonas Ries; Petra Schwille
Journal:  Biophys J       Date:  2006-03-24       Impact factor: 4.033

5.  Molecular associations and surface-active properties of short- and long-N-acyl chain ceramides.

Authors:  Jesús Sot; Félix M Goñi; Alicia Alonso
Journal:  Biochim Biophys Acta       Date:  2005-03-16

6.  Intracellular mechanisms of L-selectin induced capping.

Authors:  S Junge; B Brenner; A Lepple-Wienhues; B Nilius; F Lang; O Linderkamp; E Gulbins
Journal:  Cell Signal       Date:  1999-04       Impact factor: 4.315

7.  Cholesterol surrogates: a comparison of cholesterol and 16:0 ceramide in POPC bilayers.

Authors:  Sagar A Pandit; See-Wing Chiu; Eric Jakobsson; Ananth Grama; H L Scott
Journal:  Biophys J       Date:  2006-10-27       Impact factor: 4.033

Review 8.  Raft ceramide in molecular medicine.

Authors:  Erich Gulbins; Richard Kolesnick
Journal:  Oncogene       Date:  2003-10-13       Impact factor: 9.867

9.  Ceramide-1-phosphate, in contrast to ceramide, is not segregated into lateral lipid domains in phosphatidylcholine bilayers.

Authors:  Michael R Morrow; Anne Helle; Joshua Perry; Ilpo Vattulainen; Susanne K Wiedmer; Juha M Holopainen
Journal:  Biophys J       Date:  2009-03-18       Impact factor: 4.033

Review 10.  Ceramide, membrane rafts and infections.

Authors:  Erich Gulbins; Stephan Dreschers; Barbara Wilker; Heike Grassmé
Journal:  J Mol Med (Berl)       Date:  2004-04-07       Impact factor: 4.599

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  3 in total

1.  Ceramide-C16 Is a Versatile Modulator of Phosphatidylethanolamine Polymorphism.

Authors:  Mahmoudreza Doroudgar; Michel Lafleur
Journal:  Biophys J       Date:  2017-06-06       Impact factor: 4.033

2.  The Long-Chain Sphingoid Base of Ceramides Determines Their Propensity for Lateral Segregation.

Authors:  Md Abdullah Al Sazzad; Tomokazu Yasuda; Michio Murata; J Peter Slotte
Journal:  Biophys J       Date:  2017-03-14       Impact factor: 4.033

3.  Computational Investigation of the Effect of Lipid Membranes on Ion Permeation in Gramicidin A.

Authors:  Jeffry Setiadi; Serdar Kuyucak
Journal:  Membranes (Basel)       Date:  2016-03-18
  3 in total

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