Literature DB >> 24878229

Whole exome sequencing identifies three recessive FIG4 mutations in an apparently dominant pedigree with Charcot-Marie-Tooth disease.

Manoj P Menezes1, Leigh Waddell2, Guy M Lenk3, Simranpreet Kaur4, Daniel G MacArthur5, Miriam H Meisler3, Nigel F Clarke2.   

Abstract

Charcot-Marie-Tooth disease (CMT) is genetically heterogeneous and classification based on motor nerve conduction velocity and inheritance is used to direct genetic testing. With the less common genetic forms of CMT, identifying the causative genetic mutation by Sanger sequencing of individual genes can be time-consuming and costly. Next-generation sequencing technologies show promise for clinical testing in diseases where a similar phenotype is caused by different genes. We report the unusual occurrence of CMT4J, caused by mutations in FIG4, in a apparently dominant pedigree. The affected proband and her mother exhibit different disease severities associated with different combinations of compound heterozygous FIG4 mutations, identified by whole exome sequencing. The proband was also shown to carry a de novo nonsense mutation in the dystrophin gene, which may contribute to her more severe phenotype. This study is a cautionary reminder that in families with two generations affected, explanations other than dominant inheritance are possible, such as recessive inheritance due to three mutations segregating in the family. It also emphasises the advantages of next-generation sequencing approaches that screen multiple CMT genes at once for patients in whom the common genes have been excluded. Crown
Copyright © 2014. Published by Elsevier B.V. All rights reserved.

Entities:  

Keywords:  Autosomal recessive CMT; CMT4J; Charcot–Marie–Tooth; FIG4; Whole exome sequencing

Mesh:

Substances:

Year:  2014        PMID: 24878229      PMCID: PMC4096049          DOI: 10.1016/j.nmd.2014.04.010

Source DB:  PubMed          Journal:  Neuromuscul Disord        ISSN: 0960-8966            Impact factor:   4.296


  19 in total

1.  The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data.

Authors:  Aaron McKenna; Matthew Hanna; Eric Banks; Andrey Sivachenko; Kristian Cibulskis; Andrew Kernytsky; Kiran Garimella; David Altshuler; Stacey Gabriel; Mark Daly; Mark A DePristo
Journal:  Genome Res       Date:  2010-07-19       Impact factor: 9.043

2.  Charcot-Marie-Tooth disease subtypes and genetic testing strategies.

Authors:  Anita S D Saporta; Stephanie L Sottile; Lindsey J Miller; Shawna M E Feely; Carly E Siskind; Michael E Shy
Journal:  Ann Neurol       Date:  2011-01       Impact factor: 10.422

3.  The complete genome of an individual by massively parallel DNA sequencing.

Authors:  David A Wheeler; Maithreyan Srinivasan; Michael Egholm; Yufeng Shen; Lei Chen; Amy McGuire; Wen He; Yi-Ju Chen; Vinod Makhijani; G Thomas Roth; Xavier Gomes; Karrie Tartaro; Faheem Niazi; Cynthia L Turcotte; Gerard P Irzyk; James R Lupski; Craig Chinault; Xing-zhi Song; Yue Liu; Ye Yuan; Lynne Nazareth; Xiang Qin; Donna M Muzny; Marcel Margulies; George M Weinstock; Richard A Gibbs; Jonathan M Rothberg
Journal:  Nature       Date:  2008-04-17       Impact factor: 49.962

4.  The 2013 version of the gene table of monogenic neuromuscular disorders (nuclear genome).

Authors:  Jean-Claude Kaplan; Dalil Hamroun
Journal:  Neuromuscul Disord       Date:  2012-12       Impact factor: 4.296

5.  Clinical and genetic characterization of manifesting carriers of DMD mutations.

Authors:  Payam Soltanzadeh; Michael J Friez; Diane Dunn; Andrew von Niederhausern; Olga L Gurvich; Kathryn J Swoboda; Jacinda B Sampson; Alan Pestronk; Anne M Connolly; Julaine M Florence; Richard S Finkel; Carsten G Bönnemann; Livija Medne; Jerry R Mendell; Katherine D Mathews; Brenda L Wong; Michael D Sussman; Jonathan Zonana; Karen Kovak; Sidney M Gospe; Eduard Gappmaier; Laura E Taylor; Michael T Howard; Robert B Weiss; Kevin M Flanigan
Journal:  Neuromuscul Disord       Date:  2010-07-13       Impact factor: 4.296

6.  Mutation of FIG4 causes neurodegeneration in the pale tremor mouse and patients with CMT4J.

Authors:  Clement Y Chow; Yanling Zhang; James J Dowling; Natsuko Jin; Maja Adamska; Kensuke Shiga; Kinga Szigeti; Michael E Shy; Jun Li; Xuebao Zhang; James R Lupski; Lois S Weisman; Miriam H Meisler
Journal:  Nature       Date:  2007-06-17       Impact factor: 49.962

7.  The clinical features of hereditary motor and sensory neuropathy types I and II.

Authors:  A E Harding; P K Thomas
Journal:  Brain       Date:  1980-06       Impact factor: 13.501

8.  Mutation of FIG4 causes a rapidly progressive, asymmetric neuronal degeneration.

Authors:  Xuebao Zhang; Clement Y Chow; Zarife Sahenk; Michael E Shy; Miriam H Meisler; Jun Li
Journal:  Brain       Date:  2008-06-12       Impact factor: 13.501

9.  Deriving the consequences of genomic variants with the Ensembl API and SNP Effect Predictor.

Authors:  William McLaren; Bethan Pritchard; Daniel Rios; Yuan Chen; Paul Flicek; Fiona Cunningham
Journal:  Bioinformatics       Date:  2010-06-18       Impact factor: 6.937

10.  Fast and accurate short read alignment with Burrows-Wheeler transform.

Authors:  Heng Li; Richard Durbin
Journal:  Bioinformatics       Date:  2009-05-18       Impact factor: 6.937

View more
  11 in total

1.  Leiomodin-3 dysfunction results in thin filament disorganization and nemaline myopathy.

Authors:  Michaela Yuen; Sarah A Sandaradura; James J Dowling; Alla S Kostyukova; Natalia Moroz; Kate G Quinlan; Vilma-Lotta Lehtokari; Gianina Ravenscroft; Emily J Todd; Ozge Ceyhan-Birsoy; David S Gokhin; Jérome Maluenda; Monkol Lek; Flora Nolent; Christopher T Pappas; Stefanie M Novak; Adele D'Amico; Edoardo Malfatti; Brett P Thomas; Stacey B Gabriel; Namrata Gupta; Mark J Daly; Biljana Ilkovski; Peter J Houweling; Ann E Davidson; Lindsay C Swanson; Catherine A Brownstein; Vandana A Gupta; Livija Medne; Patrick Shannon; Nicole Martin; David P Bick; Anders Flisberg; Eva Holmberg; Peter Van den Bergh; Pablo Lapunzina; Leigh B Waddell; Darcée D Sloboda; Enrico Bertini; David Chitayat; William R Telfer; Annie Laquerrière; Carol C Gregorio; Coen A C Ottenheijm; Carsten G Bönnemann; Katarina Pelin; Alan H Beggs; Yukiko K Hayashi; Norma B Romero; Nigel G Laing; Ichizo Nishino; Carina Wallgren-Pettersson; Judith Melki; Velia M Fowler; Daniel G MacArthur; Kathryn N North; Nigel F Clarke
Journal:  J Clin Invest       Date:  2014-09-24       Impact factor: 14.808

2.  Recessive DES cardio/myopathy without myofibrillar aggregates: intronic splice variant silences one allele leaving only missense L190P-desmin.

Authors:  Lisa G Riley; Leigh B Waddell; Roula Ghaoui; Frances J Evesson; Beryl B Cummings; Samantha J Bryen; Himanshu Joshi; Min-Xia Wang; Susan Brammah; Leonard Kritharides; Alastair Corbett; Daniel G MacArthur; Sandra T Cooper
Journal:  Eur J Hum Genet       Date:  2019-04-25       Impact factor: 4.246

3.  Mutations in HSPB8 causing a new phenotype of distal myopathy and motor neuropathy.

Authors:  Roula Ghaoui; Johanna Palmio; Janice Brewer; Monkol Lek; Merrilee Needham; Anni Evilä; Peter Hackman; Per-Harald Jonson; Sini Penttilä; Anna Vihola; Sanna Huovinen; Mikaela Lindfors; Ryan L Davis; Leigh Waddell; Simran Kaur; Con Yiannikas; Kathryn North; Nigel Clarke; Daniel G MacArthur; Carolyn M Sue; Bjarne Udd
Journal:  Neurology       Date:  2015-12-30       Impact factor: 9.910

Review 4.  Phosphatidylinositol 3-phosphates-at the interface between cell signalling and membrane traffic.

Authors:  Andrea L Marat; Volker Haucke
Journal:  EMBO J       Date:  2016-02-17       Impact factor: 11.598

5.  Prominent scapulae mimicking an inherited myopathy expands the phenotype of CHD7-related disease.

Authors:  Gina L O'Grady; Alan Ma; Deborah Sival; Monica T Y Wong; Tony Peduto; Manoj P Menezes; Helen Young; Leigh Waddell; Roula Ghaoui; Merrilee Needham; Monkol Lek; Kathryn N North; Daniel G MacArthur; Conny Ma van Ravenswaaij-Arts; Nigel F Clarke
Journal:  Eur J Hum Genet       Date:  2016-01-27       Impact factor: 4.246

6.  Mutations in PIGY: expanding the phenotype of inherited glycosylphosphatidylinositol deficiencies.

Authors:  Biljana Ilkovski; Alistair T Pagnamenta; Gina L O'Grady; Taroh Kinoshita; Malcolm F Howard; Monkol Lek; Brett Thomas; Anne Turner; John Christodoulou; David Sillence; Samantha J L Knight; Niko Popitsch; David A Keays; Consuelo Anzilotti; Anne Goriely; Leigh B Waddell; Fabienne Brilot; Kathryn N North; Noriyuki Kanzawa; Daniel G Macarthur; Jenny C Taylor; Usha Kini; Yoshiko Murakami; Nigel F Clarke
Journal:  Hum Mol Genet       Date:  2015-08-20       Impact factor: 6.150

7.  Identification and description of three families with familial Alzheimer disease that segregate variants in the SORL1 gene.

Authors:  Håkan Thonberg; Huei-Hsin Chiang; Lena Lilius; Charlotte Forsell; Anna-Karin Lindström; Charlotte Johansson; Jenny Björkström; Steinunn Thordardottir; Kristel Sleegers; Christine Van Broeckhoven; Annica Rönnbäck; Caroline Graff
Journal:  Acta Neuropathol Commun       Date:  2017-06-09       Impact factor: 7.801

8.  Variants in SLC18A3, vesicular acetylcholine transporter, cause congenital myasthenic syndrome.

Authors:  Gina L O'Grady; Corien Verschuuren; Michaela Yuen; Richard Webster; Manoj Menezes; Johanna M Fock; Natalie Pride; Heather A Best; Tatiana Benavides Damm; Christian Turner; Monkol Lek; Andrew G Engel; Kathryn N North; Nigel F Clarke; Daniel G MacArthur; Erik-Jan Kamsteeg; Sandra T Cooper
Journal:  Neurology       Date:  2016-09-02       Impact factor: 9.910

Review 9.  The genetics of Charcot-Marie-Tooth disease: current trends and future implications for diagnosis and management.

Authors:  J Chad Hoyle; Michael C Isfort; Jennifer Roggenbuck; W David Arnold
Journal:  Appl Clin Genet       Date:  2015-10-19

10.  Burden of Rare Variants in ALS and Axonal Hereditary Neuropathy Genes Influence Survival in ALS: Insights from a Next Generation Sequencing Study of an Italian ALS Cohort.

Authors:  Stefania Scarlino; Teuta Domi; Laura Pozzi; Alessandro Romano; Giovanni Battista Pipitone; Yuri Matteo Falzone; Lorena Mosca; Silvana Penco; Christian Lunetta; Valeria Sansone; Lucio Tremolizzo; Raffaella Fazio; Federica Agosta; Massimo Filippi; Paola Carrera; Nilo Riva; Angelo Quattrini
Journal:  Int J Mol Sci       Date:  2020-05-08       Impact factor: 5.923

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.