Literature DB >> 24878167

Protein folding dynamics in the cell.

Irisbel Guzman1, Martin Gruebele.   

Abstract

Protein folding is a remarkably fast unimolecular reaction, spanning microseconds to hours at room temperature. Thus, free energy differences and activation barriers on the free energy landscape of proteins are rather small. This opens up the possibility of living cells modulating their protein's landscapes, providing cells another way to control the function of their proteomes after transcriptional control, translational control, and post-translational modification. In this Feature Article, we discuss advances in physicochemical studies of protein stability and folding inside living cells. We focus in particular on our studies using fast relaxation imaging (FREI). Although the effect of the cell on protein free energy landscapes is only a few kT, the strong cooperativity of many folding and binding processes allows small modulation of the energy and entropy to produce a large population modulation. Lastly, we discuss some biomolecular processes that are particularly likely to be affected by in-cell modulation of the proteome, and thus of interest for quantitative physical chemistry studies.

Mesh:

Year:  2014        PMID: 24878167     DOI: 10.1021/jp501866v

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  8 in total

Review 1.  Characterizing proteins in their cellular environment: Examples of recent advances in quantitative fluorescence microscopy.

Authors:  Catherine A Royer
Journal:  Protein Sci       Date:  2019-05-22       Impact factor: 6.725

Review 2.  Intrinsically disordered proteins in crowded milieu: when chaos prevails within the cellular gumbo.

Authors:  Alexander V Fonin; April L Darling; Irina M Kuznetsova; Konstantin K Turoverov; Vladimir N Uversky
Journal:  Cell Mol Life Sci       Date:  2018-07-31       Impact factor: 9.261

Review 3.  Meandering Down the Energy Landscape of Protein Folding: Are We There Yet?

Authors:  Rachel M Abaskharon; Feng Gai
Journal:  Biophys J       Date:  2016-05-10       Impact factor: 4.033

Review 4.  Toward an understanding of biochemical equilibria within living cells.

Authors:  Germán Rivas; Allen P Minton
Journal:  Biophys Rev       Date:  2017-12-12

5.  Thermodynamics of Macromolecular Association in Heterogeneous Crowding Environments: Theoretical and Simulation Studies with a Simplified Model.

Authors:  Tadashi Ando; Isseki Yu; Michael Feig; Yuji Sugita
Journal:  J Phys Chem B       Date:  2016-11-15       Impact factor: 2.991

Review 6.  Macromolecular Crowding In Vitro, In Vivo, and In Between.

Authors:  Germán Rivas; Allen P Minton
Journal:  Trends Biochem Sci       Date:  2016-09-23       Impact factor: 13.807

7.  Ligand-promoted protein folding by biased kinetic partitioning.

Authors:  Karan S Hingorani; Matthew C Metcalf; Derrick T Deming; Scott C Garman; Evan T Powers; Lila M Gierasch
Journal:  Nat Chem Biol       Date:  2017-02-20       Impact factor: 15.040

8.  Macromolecular crowding in solution alters huntingtin interaction and aggregation at interfaces.

Authors:  Sharon E Groover; Adewale Adegbuyiro; Caleb K Fan; Breanna L Hodges; Maryssa Beasley; Katelyn Taylor; Alyssa R Stonebraker; Chathuranga Siriwardhana; Justin Legleiter
Journal:  Colloids Surf B Biointerfaces       Date:  2021-07-07       Impact factor: 5.999

  8 in total

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