Literature DB >> 24874788

Whole genome sequencing and the transformation of C. elegans forward genetics.

Patrick J Hu1.   

Abstract

Forward genetics has been an undeniably powerful approach in Caenorhabditis elegans and other model organisms. However, the trek from mutant isolation to identification of the causative molecular lesion can be time-consuming and fraught with obstacles. This has changed with the advent of whole genome sequencing (WGS). The widespread availability of high-throughput sequencing technology, coupled with the increasing affordability of WGS, has enabled the routine use of WGS in the analysis of forward genetic screens. The noteworthy development of one-step mapping/sequencing approaches has largely eliminated the bottleneck of conventional high-resolution mapping, greatly accelerating the journey from mutagenesis to gene discovery. By enabling the use of increasingly complex and diverse genetic backgrounds as substrates for mutagenesis, WGS is expanding the landscape of biological problems that can be interrogated using forward genetic approaches in C. elegans and other organisms.
Copyright © 2014 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  C. elegans; Forward genetics; Mapping; Mutagenesis; Whole genome sequencing

Mesh:

Year:  2014        PMID: 24874788     DOI: 10.1016/j.ymeth.2014.05.008

Source DB:  PubMed          Journal:  Methods        ISSN: 1046-2023            Impact factor:   3.608


  8 in total

1.  Expanding the C. elegans toolbox into a toolshed.

Authors:  Arjumand Ghazi; Judith Yanowitz; Gary A Silverman
Journal:  Methods       Date:  2014-08-01       Impact factor: 3.608

2.  Next-Generation Sequencing for Identification of EMS-Induced Mutations in Caenorhabditis elegans.

Authors:  Nicolas J Lehrbach; Fei Ji; Ruslan Sadreyev
Journal:  Curr Protoc Mol Biol       Date:  2017-01-05

3.  Chromoanasynthetic Genomic Rearrangement Identified in a N-Ethyl-N-Nitrosourea (ENU) Mutagenesis Screen in Caenorhabditis elegans.

Authors:  Omar A Itani; Stephane Flibotte; Kathleen J Dumas; Donald G Moerman; Patrick J Hu
Journal:  G3 (Bethesda)       Date:  2015-12-01       Impact factor: 3.154

4.  Natural Genetic Variation in the Caenorhabditis elegans Response to Pseudomonas aeruginosa.

Authors:  Natalia Martin; Jogender Singh; Alejandro Aballay
Journal:  G3 (Bethesda)       Date:  2017-04-03       Impact factor: 3.154

5.  Use of a Sibling Subtraction Method for Identifying Causal Mutations in Caenorhabditis elegans by Whole-Genome Sequencing.

Authors:  Braveen B Joseph; Nicolas A Blouin; David S Fay
Journal:  G3 (Bethesda)       Date:  2018-02-02       Impact factor: 3.154

6.  Fast genetic mapping using insertion-deletion polymorphisms in Caenorhabditis elegans.

Authors:  Ho-Yon Hwang; Jiou Wang
Journal:  Sci Rep       Date:  2021-05-26       Impact factor: 4.379

7.  Mapping Challenging Mutations by Whole-Genome Sequencing.

Authors:  Harold E Smith; Amy S Fabritius; Aimee Jaramillo-Lambert; Andy Golden
Journal:  G3 (Bethesda)       Date:  2016-05-03       Impact factor: 3.154

8.  Mouse models of human ocular disease for translational research.

Authors:  Mark P Krebs; Gayle B Collin; Wanda L Hicks; Minzhong Yu; Jeremy R Charette; Lan Ying Shi; Jieping Wang; Jürgen K Naggert; Neal S Peachey; Patsy M Nishina
Journal:  PLoS One       Date:  2017-08-31       Impact factor: 3.240

  8 in total

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