Literature DB >> 24863438

Nitrogen-use efficiency in maize (Zea mays L.): from 'omics' studies to metabolic modelling.

Margaret Simons1, Rajib Saha1, Lenaïg Guillard2, Gilles Clément3, Patrick Armengaud2, Rafael Cañas2, Costas D Maranas1, Peter J Lea4, Bertrand Hirel5.   

Abstract

In this review, we will present the latest developments in systems biology with particular emphasis on improving nitrogen-use efficiency (NUE) in crops such as maize and demonstrating the application of metabolic models. The review highlights the importance of improving NUE in crops and provides an overview of the transcriptome, proteome, and metabolome datasets available, focusing on a comprehensive understanding of nitrogen regulation. 'Omics' data are hard to interpret in the absence of metabolic flux information within genome-scale models. These models, when integrated with 'omics' data, can serve as a basis for generating predictions that focus and guide further experimental studies. By simulating different nitrogen (N) conditions at a pseudo-steady state, the reactions affecting NUE and additional gene regulations can be determined. Such models thus provide a framework for improving our understanding of the metabolic processes underlying the more efficient use of N-based fertilizers.
© The Author 2014. Published by Oxford University Press on behalf of the Society for Experimental Biology. All rights reserved. For permissions, please email: journals.permissions@oup.com.

Entities:  

Keywords:  Maize; metabolic modelling; metabolome; proteome; systems biology; transcriptome.

Mesh:

Substances:

Year:  2014        PMID: 24863438     DOI: 10.1093/jxb/eru227

Source DB:  PubMed          Journal:  J Exp Bot        ISSN: 0022-0957            Impact factor:   6.992


  26 in total

Review 1.  "Omics" of maize stress response for sustainable food production: opportunities and challenges.

Authors:  Fangping Gong; Le Yang; Fuju Tai; Xiuli Hu; Wei Wang
Journal:  OMICS       Date:  2014-12

2.  Band Phosphorus and Sulfur Fertilization as Drivers of Efficient Management of Nitrogen of Maize (Zea mays L.).

Authors:  Przemysław Barłóg; Remigiusz Łukowiak; Lukáš Hlisnikovský
Journal:  Plants (Basel)       Date:  2022-06-23

3.  Integration of Hormonal and Nutritional Cues Orchestrates Progressive Corolla Opening.

Authors:  Chengzhen Sun; Yanqiang Li; Wensheng Zhao; Xiaofei Song; Man Lu; Xiaoli Li; Xuexian Li; Renyi Liu; Liying Yan; Xiaolan Zhang
Journal:  Plant Physiol       Date:  2016-04-25       Impact factor: 8.340

4.  Assessing the metabolic impact of nitrogen availability using a compartmentalized maize leaf genome-scale model.

Authors:  Margaret Simons; Rajib Saha; Nardjis Amiour; Akhil Kumar; Lenaïg Guillard; Gilles Clément; Martine Miquel; Zhenni Li; Gregory Mouille; Peter J Lea; Bertrand Hirel; Costas D Maranas
Journal:  Plant Physiol       Date:  2014-09-23       Impact factor: 8.340

5.  Nitrogen assimilation system in maize is regulated by developmental and tissue-specific mechanisms.

Authors:  Darren Plett; Luke Holtham; Ute Baumann; Elena Kalashyan; Karen Francis; Akiko Enju; John Toubia; Ute Roessner; Antony Bacic; Antoni Rafalski; Kanwarpal S Dhugga; Mark Tester; Trevor Garnett; Brent N Kaiser
Journal:  Plant Mol Biol       Date:  2016-08-10       Impact factor: 4.076

6.  Candidate genes and genome-wide association study of grain protein content and protein deviation in durum wheat.

Authors:  D Nigro; A Gadaleta; G Mangini; P Colasuonno; I Marcotuli; A Giancaspro; S L Giove; R Simeone; A Blanco
Journal:  Planta       Date:  2019-01-02       Impact factor: 4.116

7.  Comparative Analysis Based on Transcriptomics and Metabolomics Data Reveal Differences between Emmer and Durum Wheat in Response to Nitrogen Starvation.

Authors:  Romina Beleggia; Nooshin Omranian; Yan Holtz; Tania Gioia; Fabio Fiorani; Franca M Nigro; Nicola Pecchioni; Pasquale De Vita; Ulrich Schurr; Jacques L David; Zoran Nikoloski; Roberto Papa
Journal:  Int J Mol Sci       Date:  2021-04-30       Impact factor: 5.923

8.  Transcriptome sequencing reveals the roles of transcription factors in modulating genotype by nitrogen interaction in maize.

Authors:  Qiuyue Chen; Zhipeng Liu; Baobao Wang; Xufeng Wang; Jinsheng Lai; Feng Tian
Journal:  Plant Cell Rep       Date:  2015-06-27       Impact factor: 4.570

9.  Nitrogen deficiency in barley (Hordeum vulgare) seedlings induces molecular and metabolic adjustments that trigger aphid resistance.

Authors:  Gloria Comadira; Brwa Rasool; Barbara Karpinska; Jenny Morris; Susan R Verrall; Peter E Hedley; Christine H Foyer; Robert D Hancock
Journal:  J Exp Bot       Date:  2015-06-02       Impact factor: 6.992

10.  Making better maize plants for sustainable grain production in a changing climate.

Authors:  Fangping Gong; Xiaolin Wu; Huiyong Zhang; Yanhui Chen; Wei Wang
Journal:  Front Plant Sci       Date:  2015-10-06       Impact factor: 5.753

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