Literature DB >> 24860384

O-Ethyl S-{(S)-1-oxo-1-[(R)-2-oxo-4-phenyl-oxazolidin-3-yl]propan-2-yl} carbonodi-thio-ate.

J Pablo García-Merinos1, Heraclio López-Ruiz2, Yliana López3, Susana Rojas-Lima2.   

Abstract

In the title compound, C15H17NO4S2, synthesized by addition of O-ethylxanthic acid potassium salt to a diastereomeric mixture of (4R)-3-(2-chloro-propano-yl)-4-phenyl-oxazolidin-2-one, the oxazolidinone ring has a twist conformation on the C-C bond. The phenyl ring is inclined to the mean plane of the oxazolidinone ring by 76.4 (3)°. In the chain the methine H atom is involved in a C-H⋯S and a C-H⋯O intra-molecular inter-action. In the crystal, mol-ecules are linked by C-H⋯π inter-actions, forming chains along [001]. The S configuration at the C atom to which the xanthate group is attached was determined by comparison to the known R configuration of the C atom to which the phenyl group is attached.

Entities:  

Year:  2014        PMID: 24860384      PMCID: PMC4011202          DOI: 10.1107/S1600536814007636

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the use of chiral oxazolidinones auxiliaries in asymmetric synthesis, see: Evans (1982 ▶); Ager et al. (1997 ▶). For the oral activity of oxazolidinonas against multidrug-resistant Gram-positive bacteria, see: Müller & Schimz (1999 ▶). For our work on the synthesis of novel heterocyclic compounds, see for example: López-Ruiz et al. (2011 ▶). For the crystal structures of similar compounds, see: Bartczak et al. (2001 ▶); Kruszynski et al. (2001 ▶); Wouters et al. (1997 ▶). For the crystal structures of 3,4-disubstituted oxazolidinone derivatives, see: Marsh et al. (1992 ▶); Evain et al. (2002 ▶); Hwang et al. (2006 ▶). For standard bond lengths, see: Allen et al. (1987 ▶). For ring puckering analysis, see: Cremer & Pople (1975 ▶).

Experimental

Crystal data

C15H17NO4S2 M = 339.42 Monoclinic, a = 10.8558 (15) Å b = 6.1867 (9) Å c = 12.3057 (17) Å β = 94.911 (4)° V = 823.4 (2) Å3 Z = 2 Mo Kα radiation μ = 0.34 mm−1 T = 293 K 0.2 × 0.17 × 0.16 mm

Data collection

Bruker SMART CCD diffractometer 10191 measured reflections 3223 independent reflections 1681 reflections with I > 2σ(I) R int = 0.152

Refinement

R[F 2 > 2σ(F 2)] = 0.067 wR(F 2) = 0.191 S = 0.87 3223 reflections 201 parameters 1 restraint H-atom parameters constrained Δρmax = 0.38 e Å−3 Δρmin = −0.35 e Å−3 Absolute structure: Flack (1983 ▶), 6968 Friedel pairs Absolute structure parameter: 0.08 (18) Data collection: SMART (Bruker, 1999 ▶); cell refinement: SAINT (Bruker, 1999 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2009 ▶) and Mercury (Macrae et al., 2008 ▶); software used to prepare material for publication: WinGX (Farrugia, 2012 ▶) and publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) I. DOI: 10.1107/S1600536814007636/su2715sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536814007636/su2715Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S1600536814007636/su2715Isup3.cml CCDC reference: 995594 Additional supporting information: crystallographic information; 3D view; checkCIF report
C15H17NO4S2F(000) = 356
Mr = 339.42Dx = 1.369 Mg m3
Monoclinic, P21Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ybCell parameters from 1321 reflections
a = 10.8558 (15) Åθ = 1.7–26.0°
b = 6.1867 (9) ŵ = 0.34 mm1
c = 12.3057 (17) ÅT = 293 K
β = 94.911 (4)°Block, colourless
V = 823.4 (2) Å30.2 × 0.17 × 0.16 mm
Z = 2
Bruker SMART CCD diffractometer1681 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.152
Graphite monochromatorθmax = 26.0°, θmin = 1.7°
φ and ω scansh = −13→13
10191 measured reflectionsk = −7→7
3223 independent reflectionsl = −15→15
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.067H-atom parameters constrained
wR(F2) = 0.191w = 1/[σ2(Fo2) + (0.0945P)2] where P = (Fo2 + 2Fc2)/3
S = 0.87(Δ/σ)max < 0.001
3223 reflectionsΔρmax = 0.38 e Å3
201 parametersΔρmin = −0.35 e Å3
1 restraintAbsolute structure: Flack (1983), 6968 Friedel pairs
Primary atom site location: structure-invariant direct methodsAbsolute structure parameter: 0.08 (18)
Experimental. Spectroscopic data for the title compound: 1H NMR (400 MHz, CDCl3)δ: 7.2 (m, 5H, CH, arom), 5.6 (q, 1H, CH (H-4), J= 7.3 Hz), 5.4 (dd, CH (H-9), J1= 3.2 Hz, J2=8.6 Hz), 4.7 (t, 1H (H-8a), CH2, J= 8.8 Hz), 4.6 (m, 2H, CH2(H-2)), 4.3 (dd, 1H (H-8 b), J1= 3.2 Hz, J2= 8.6 Hz), 1.4 (d,3H,CH3 (H-5), J= 7.3 Hz), 1.4 (t, 3H,CH3 (H-1), J= 7.3 Hz); 13C NMR (100 MHz, CDCl3) δ: 213 (CS), 171.05 (CO), 153.53 (CO), 138.74 (C), 129.33 (CH), 128.93 (2CH), 125.90 (CH), 70.35 (2CH2), 58.03 (CH), 57.94 (CH), 47.20 (CH), 15.80 (CH3), 13.60 (CH3).
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.8431 (7)0.9153 (19)1.0271 (7)0.101 (3)
H1A0.84150.92260.94910.151*
H1B0.92090.96931.05910.151*
H1C0.77721.00151.05130.151*
C20.8275 (6)0.6889 (16)1.0609 (6)0.082 (2)
H2A0.89320.60111.03540.098*
H2B0.83280.68041.13990.098*
C30.6967 (6)0.5034 (10)0.9216 (5)0.0560 (17)
C40.5331 (5)0.2814 (10)0.7734 (5)0.0479 (15)
H40.60110.32100.72980.057*
C50.5440 (7)0.0432 (10)0.8030 (6)0.069 (2)
H5A0.47630.00230.84390.103*
H5B0.62060.01850.84620.103*
H5C0.5421−0.04150.73750.103*
C60.4117 (6)0.3295 (9)0.7086 (5)0.0459 (14)
C70.4827 (6)0.1846 (9)0.5343 (5)0.0481 (15)
C80.2958 (6)0.1740 (13)0.4298 (5)0.0613 (17)
H8A0.25660.03480.41530.074*
H8B0.26530.27480.37340.074*
C90.2687 (5)0.2584 (10)0.5439 (4)0.0458 (14)
H90.24340.41040.53880.055*
C100.1727 (5)0.1287 (9)0.5970 (4)0.0420 (14)
C110.0555 (5)0.2134 (10)0.6019 (5)0.0516 (16)
H110.03570.34790.57150.062*
C12−0.0328 (6)0.0959 (11)0.6529 (6)0.0632 (19)
H12−0.11160.15280.65670.076*
C13−0.0047 (6)−0.1024 (13)0.6975 (5)0.066 (2)
H13−0.0641−0.17760.73240.080*
C140.1105 (7)−0.1919 (11)0.6912 (6)0.0673 (19)
H140.1292−0.32790.72040.081*
C150.1990 (5)−0.0740 (13)0.6399 (5)0.0583 (15)
H150.2770−0.13320.63460.070*
N10.3934 (4)0.2412 (7)0.6027 (4)0.0423 (11)
O10.7069 (4)0.6056 (9)1.0155 (4)0.0770 (15)
O20.3286 (4)0.4268 (9)0.7448 (3)0.0631 (11)
O30.5918 (4)0.1651 (7)0.5559 (4)0.0566 (12)
O40.4291 (4)0.1544 (7)0.4330 (3)0.0551 (11)
S10.80766 (14)0.4339 (4)0.84599 (14)0.0760 (6)
S20.53803 (14)0.4534 (3)0.89279 (13)0.0631 (5)
U11U22U33U12U13U23
C10.068 (5)0.143 (8)0.091 (6)−0.024 (6)−0.002 (4)0.019 (7)
C20.054 (4)0.126 (8)0.063 (4)0.001 (4)−0.010 (4)−0.019 (5)
C30.049 (3)0.072 (5)0.046 (4)0.001 (3)0.002 (3)0.003 (3)
C40.040 (3)0.054 (4)0.051 (3)0.004 (3)0.011 (3)−0.003 (3)
C50.081 (5)0.067 (5)0.057 (4)0.006 (4)0.000 (4)0.006 (3)
C60.048 (3)0.043 (3)0.048 (4)−0.006 (3)0.011 (3)−0.002 (3)
C70.057 (4)0.038 (3)0.051 (4)−0.003 (3)0.016 (3)0.002 (3)
C80.053 (4)0.083 (5)0.048 (4)−0.002 (3)0.005 (3)−0.002 (4)
C90.041 (3)0.050 (3)0.046 (3)−0.002 (3)0.005 (3)0.002 (3)
C100.045 (3)0.039 (3)0.042 (3)−0.004 (3)0.003 (3)−0.003 (3)
C110.049 (4)0.056 (4)0.049 (4)0.007 (3)0.003 (3)−0.002 (3)
C120.040 (3)0.076 (5)0.075 (5)−0.007 (4)0.010 (3)−0.013 (4)
C130.056 (4)0.085 (6)0.060 (4)−0.034 (4)0.016 (3)−0.003 (4)
C140.060 (4)0.070 (5)0.071 (4)−0.009 (4)0.000 (4)0.007 (4)
C150.042 (3)0.060 (4)0.073 (4)−0.001 (4)0.010 (3)−0.003 (4)
N10.034 (2)0.050 (3)0.044 (3)0.000 (2)0.009 (2)0.000 (2)
O10.049 (3)0.116 (4)0.065 (3)−0.009 (3)0.003 (2)−0.028 (3)
O20.047 (2)0.088 (3)0.055 (2)0.014 (3)0.0065 (19)−0.019 (3)
O30.044 (3)0.065 (3)0.063 (3)0.006 (2)0.015 (2)−0.006 (2)
O40.059 (3)0.061 (3)0.047 (3)−0.001 (2)0.017 (2)−0.004 (2)
S10.0462 (9)0.1207 (15)0.0621 (10)−0.0011 (13)0.0095 (7)−0.0115 (13)
S20.0438 (8)0.0872 (12)0.0585 (9)−0.0036 (10)0.0067 (7)−0.0216 (10)
C1—C21.475 (13)C7—O41.344 (7)
C1—H1A0.9600C7—N11.382 (7)
C1—H1B0.9600C8—O41.449 (8)
C1—H1C0.9600C8—C91.550 (8)
C2—O11.472 (8)C8—H8A0.9700
C2—H2A0.9700C8—H8B0.9700
C2—H2B0.9700C9—N11.483 (7)
C3—O11.313 (7)C9—C101.507 (8)
C3—S11.642 (6)C9—H90.9800
C3—S21.756 (6)C10—C151.381 (9)
C4—C61.511 (8)C10—C111.383 (8)
C4—C51.520 (8)C11—C121.395 (9)
C4—S21.811 (6)C11—H110.9300
C4—H40.9800C12—C131.367 (10)
C5—H5A0.9600C12—H120.9300
C5—H5B0.9600C13—C141.376 (10)
C5—H5C0.9600C13—H130.9300
C6—O21.201 (7)C14—C151.399 (9)
C6—N11.411 (7)C14—H140.9300
C7—O31.198 (8)C15—H150.9300
C2—C1—H1A109.5C9—C8—H8A110.6
C2—C1—H1B109.5O4—C8—H8B110.6
H1A—C1—H1B109.5C9—C8—H8B110.6
C2—C1—H1C109.5H8A—C8—H8B108.7
H1A—C1—H1C109.5N1—C9—C10112.7 (5)
H1B—C1—H1C109.5N1—C9—C8100.5 (4)
O1—C2—C1110.2 (6)C10—C9—C8113.9 (5)
O1—C2—H2A109.6N1—C9—H9109.8
C1—C2—H2A109.6C10—C9—H9109.8
O1—C2—H2B109.6C8—C9—H9109.8
C1—C2—H2B109.6C15—C10—C11119.2 (5)
H2A—C2—H2B108.1C15—C10—C9121.4 (5)
O1—C3—S1127.9 (5)C11—C10—C9119.3 (5)
O1—C3—S2105.7 (4)C10—C11—C12119.5 (6)
S1—C3—S2126.4 (4)C10—C11—H11120.2
C6—C4—C5111.4 (5)C12—C11—H11120.2
C6—C4—S2106.1 (4)C13—C12—C11120.6 (6)
C5—C4—S2112.3 (5)C13—C12—H12119.7
C6—C4—H4109.0C11—C12—H12119.7
C5—C4—H4109.0C12—C13—C14120.8 (6)
S2—C4—H4109.0C12—C13—H13119.6
C4—C5—H5A109.5C14—C13—H13119.6
C4—C5—H5B109.5C13—C14—C15118.5 (7)
H5A—C5—H5B109.5C13—C14—H14120.7
C4—C5—H5C109.5C15—C14—H14120.7
H5A—C5—H5C109.5C10—C15—C14121.3 (6)
H5B—C5—H5C109.5C10—C15—H15119.4
O2—C6—N1119.1 (5)C14—C15—H15119.4
O2—C6—C4123.5 (5)C7—N1—C6127.6 (5)
N1—C6—C4117.3 (5)C7—N1—C9112.3 (5)
O3—C7—O4122.3 (5)C6—N1—C9118.2 (4)
O3—C7—N1128.5 (6)C3—O1—C2120.5 (5)
O4—C7—N1109.3 (5)C7—O4—C8111.5 (5)
O4—C8—C9105.7 (5)C3—S2—C4103.2 (3)
O4—C8—H8A110.6
C5—C4—C6—O2108.2 (7)O3—C7—N1—C9177.2 (6)
S2—C4—C6—O2−14.3 (7)O4—C7—N1—C9−1.9 (6)
C5—C4—C6—N1−67.3 (7)O2—C6—N1—C7158.5 (6)
S2—C4—C6—N1170.3 (4)C4—C6—N1—C7−25.8 (8)
O4—C8—C9—N1−8.7 (6)O2—C6—N1—C9−4.6 (8)
O4—C8—C9—C10−129.5 (5)C4—C6—N1—C9171.1 (5)
N1—C9—C10—C15−40.0 (8)C10—C9—N1—C7128.3 (5)
C8—C9—C10—C1573.6 (7)C8—C9—N1—C76.7 (6)
N1—C9—C10—C11140.7 (5)C10—C9—N1—C6−66.1 (6)
C8—C9—C10—C11−105.7 (6)C8—C9—N1—C6172.3 (5)
C15—C10—C11—C121.9 (9)S1—C3—O1—C25.3 (10)
C9—C10—C11—C12−178.7 (5)S2—C3—O1—C2−175.1 (6)
C10—C11—C12—C13−0.3 (10)C1—C2—O1—C392.6 (8)
C11—C12—C13—C14−1.2 (10)O3—C7—O4—C8176.3 (6)
C12—C13—C14—C151.1 (10)N1—C7—O4—C8−4.5 (6)
C11—C10—C15—C14−2.0 (9)C9—C8—O4—C78.6 (7)
C9—C10—C15—C14178.6 (6)O1—C3—S2—C4−172.4 (5)
C13—C14—C15—C100.5 (10)S1—C3—S2—C47.2 (5)
O3—C7—N1—C613.3 (10)C6—C4—S2—C3−149.4 (4)
O4—C7—N1—C6−165.8 (5)C5—C4—S2—C388.8 (5)
D—H···AD—HH···AD···AD—H···A
C4—H4···S10.982.653.180 (9)114
C4—H4···O30.982.342.895 (10)115
C2—H2B···Cgi0.972.903.807 (8)156
Table 1

Hydrogen-bond geometry (Å, °)

Cg is the centroid of the C10–C15 phenyl ring.

D—H⋯A D—HH⋯A DA D—H⋯A
C4—H4⋯S10.982.653.180 (9)114
C4—H4⋯O30.982.342.895 (10)115
C2—H2BCg i 0.972.903.807 (8)156

Symmetry code: (i) .

  5 in total

1.  A chiral N-crotonyloxazolidinone Diels-Alder adduct.

Authors:  R E Marsh; W P Schaefer; P J Kukkola; A G Myers
Journal:  Acta Crystallogr C       Date:  1992-09-15       Impact factor: 1.172

2.  (4S)-3-[(2R,3S)-3-Hydroxy-2-methyl-3-phenylpropionyl]-4-isopropyloxazolidin-2-one.

Authors:  In Chul Hwang; Jung Hee Jang; Taek Hyeon Kim; Kwang Ha
Journal:  Acta Crystallogr C       Date:  2006-03-18       Impact factor: 1.172

3.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

Review 4.  Oxazolidinones: a novel class of antibiotics.

Authors:  M Müller; K L Schimz
Journal:  Cell Mol Life Sci       Date:  1999-10-15       Impact factor: 9.261

5.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  5 in total

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