Literature DB >> 24860382

{2-[(2-Bromo-5-meth-oxy-benzyl-idene)amino]-4,5,6,7-tetra-hydro-benzo[b]thiophen-3-yl}(phen-yl)methanone.

Manpreet Kaur1, Jerry P Jasinski2, Thammarse S Yamuna1, H S Yathirajan1, K Byrappa3.   

Abstract

In the title compound, C23H20BrNO2S, disorder was modeled for the outer two C atoms of the cyclo-hexene ring over two sets of sites with an occupancy ratio of 0.580 (11):0.420 (11). Both rings have a half-chair conformation. The dihedral angles between the mean plane of the thio-phene ring and the benzene and phenyl rings are 9.2 (2) and 66.1 (2)°, respectively. The benzene and phenyl rings are inclined to each other by 74.8 (8)°. In the crystal, mol-ecules are linked by pairs of C-H⋯O hydrogen bonds, forming inversion dimers.

Entities:  

Year:  2014        PMID: 24860382      PMCID: PMC4011278          DOI: 10.1107/S1600536814008290

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For applications of 2-amino­thio­phene derivatives, see: Sabnis et al. (1999 ▶); Puterová et al. (2010 ▶). For the biological and industrial importance of Schiff bases, see: Desai et al. (2001 ▶); Karia & Parsania (1999 ▶); Samadhiya & Halve (2001 ▶); Singh & Dash (1988 ▶); Aydogan et al. (2001 ▶); Taggi et al. (2002 ▶). For a related structure, see: Kubicki et al. (2012 ▶). For puckering parameters, see: Cremer & Pople (1975 ▶). For standard bond lengths, see: Allen et al. (1987 ▶).

Experimental

Crystal data

C23H20BrNO2S M = 454.37 Monoclinic, a = 8.84813 (17) Å b = 12.5563 (2) Å c = 18.4384 (4) Å β = 102.363 (2)° V = 2001.00 (7) Å3 Z = 4 Cu Kα radiation μ = 3.92 mm−1 T = 173 K 0.26 × 0.22 × 0.14 mm

Data collection

Agilent Eos Gemini diffractometer Absorption correction: multi-scan (CrysAlis PRO and CrysAlis RED; Agilent, 2012 ▶) T min = 0.725, T max = 1.000 12404 measured reflections 3853 independent reflections 3440 reflections with I > 2σ(I) R int = 0.034

Refinement

R[F 2 > 2σ(F 2)] = 0.032 wR(F 2) = 0.087 S = 1.05 3853 reflections 273 parameters H-atom parameters constrained Δρmax = 0.56 e Å−3 Δρmin = −0.31 e Å−3 Data collection: CrysAlis PRO (Agilent, 2012 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis RED (Agilent, 2012 ▶); program(s) used to solve structure: SUPERFLIP (Palatinus & Chapuis, 2007 ▶); program(s) used to refine structure: SHELXL2012 (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2009 ▶) and Mercury (Macrae et al., 2008 ▶); software used to prepare material for publication: OLEX2 (Dolomanov et al., 2009 ▶) and PLATON. Crystal structure: contains datablock(s) I. DOI: 10.1107/S1600536814008290/su2721sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536814008290/su2721Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S1600536814008290/su2721Isup3.cml CCDC reference: 997010 Additional supporting information: crystallographic information; 3D view; checkCIF report
C23H20BrNO2SF(000) = 928
Mr = 454.37Dx = 1.508 Mg m3
Monoclinic, P21/nCu Kα radiation, λ = 1.54184 Å
a = 8.84813 (17) ÅCell parameters from 5917 reflections
b = 12.5563 (2) Åθ = 4.3–71.4°
c = 18.4384 (4) ŵ = 3.92 mm1
β = 102.363 (2)°T = 173 K
V = 2001.00 (7) Å3Irregular, yellow
Z = 40.26 × 0.22 × 0.14 mm
Agilent Eos Gemini diffractometer3440 reflections with I > 2σ(I)
Radiation source: Enhance (Cu) X-ray SourceRint = 0.034
ω scansθmax = 71.3°, θmin = 4.3°
Absorption correction: multi-scan (CrysAlis PRO and CrysAlis RED; Agilent, 2012)h = −10→10
Tmin = 0.725, Tmax = 1.000k = −15→13
12404 measured reflectionsl = −22→22
3853 independent reflections
Refinement on F20 restraints
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.032H-atom parameters constrained
wR(F2) = 0.087w = 1/[σ2(Fo2) + (0.0539P)2 + 0.1502P] where P = (Fo2 + 2Fc2)/3
S = 1.05(Δ/σ)max < 0.001
3853 reflectionsΔρmax = 0.56 e Å3
273 parametersΔρmin = −0.31 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
xyzUiso*/UeqOcc. (<1)
Br10.09686 (3)0.02458 (2)0.60828 (2)0.03755 (10)
S10.37522 (6)−0.13254 (4)0.41239 (3)0.02972 (12)
O10.3841 (2)0.10568 (12)0.20797 (8)0.0407 (4)
O20.17717 (19)0.45920 (12)0.48309 (10)0.0405 (4)
N10.31360 (18)0.08489 (13)0.41394 (9)0.0273 (3)
C10.4306 (2)0.10714 (15)0.27533 (11)0.0277 (4)
C20.4297 (2)0.00672 (15)0.31824 (11)0.0252 (4)
C30.4776 (2)−0.09409 (15)0.29439 (10)0.0260 (4)
C40.5456 (2)−0.11311 (16)0.22707 (12)0.0326 (4)
H4AA0.4632−0.10740.18150.039*0.580 (11)
H4AB0.6246−0.05810.22470.039*0.580 (11)
H4BC0.6560−0.09220.23820.039*0.420 (11)
H4BD0.4906−0.06890.18520.039*0.420 (11)
C5A0.6185 (8)−0.2219 (3)0.2307 (3)0.0388 (14)0.580 (11)
H5AA0.7174−0.22130.26800.047*0.580 (11)
H5AB0.6418−0.23940.18190.047*0.580 (11)
C6A0.5129 (10)−0.3069 (3)0.2513 (3)0.0427 (14)0.580 (11)
H6AA0.5568−0.37830.24620.051*0.580 (11)
H6AB0.4100−0.30280.21730.051*0.580 (11)
C5B0.5303 (11)−0.2343 (5)0.2047 (4)0.0386 (18)0.420 (11)
H5BA0.4198−0.25240.18650.046*0.420 (11)
H5BB0.5848−0.24760.16390.046*0.420 (11)
C6B0.5977 (12)−0.3033 (5)0.2695 (4)0.0411 (17)0.420 (11)
H6BA0.7060−0.28200.29040.049*0.420 (11)
H6BB0.5974−0.37860.25360.049*0.420 (11)
C70.4959 (3)−0.29043 (15)0.33123 (12)0.0353 (4)
H7AA0.4128−0.33670.34190.042*0.580 (11)
H7AB0.5938−0.30890.36620.042*0.580 (11)
H7BC0.3994−0.33220.31650.042*0.420 (11)
H7BD0.5543−0.31860.37930.042*0.420 (11)
C80.4568 (2)−0.17526 (15)0.34010 (11)0.0269 (4)
C90.3723 (2)−0.00049 (15)0.38167 (11)0.0255 (4)
C100.4899 (2)0.20856 (15)0.31299 (10)0.0267 (4)
C110.5983 (2)0.20984 (17)0.38015 (12)0.0346 (4)
H110.62930.14510.40570.041*
C120.6606 (3)0.3059 (2)0.40951 (14)0.0441 (5)
H120.73620.30690.45470.053*
C130.6125 (3)0.40071 (19)0.37281 (15)0.0483 (6)
H130.65580.46640.39280.058*
C140.5021 (3)0.39969 (18)0.30749 (14)0.0444 (5)
H140.46740.46470.28320.053*
C150.4416 (3)0.30354 (16)0.27719 (12)0.0345 (4)
H150.36680.30290.23180.041*
C160.2623 (2)0.07449 (15)0.47319 (11)0.0277 (4)
H160.26470.00670.49640.033*
C170.1995 (2)0.16678 (16)0.50565 (11)0.0281 (4)
C180.1202 (2)0.15806 (16)0.56306 (11)0.0299 (4)
C190.0562 (2)0.24697 (18)0.58977 (12)0.0348 (4)
H19−0.00090.23920.62760.042*
C200.0754 (2)0.34625 (17)0.56152 (12)0.0358 (5)
H200.03190.40710.57990.043*
C210.1592 (2)0.35725 (16)0.50552 (12)0.0319 (4)
C220.2189 (2)0.26847 (16)0.47765 (11)0.0299 (4)
H220.27390.27630.43900.036*
C230.2887 (3)0.47572 (17)0.43904 (14)0.0413 (5)
H23A0.25360.44140.39060.062*
H23B0.38790.44490.46420.062*
H23C0.30150.55230.43200.062*
U11U22U33U12U13U23
Br10.04351 (15)0.03807 (15)0.03571 (15)−0.00469 (8)0.01879 (10)0.00195 (8)
S10.0388 (3)0.0250 (2)0.0288 (2)−0.00344 (17)0.0148 (2)0.00060 (17)
O10.0647 (10)0.0314 (7)0.0247 (7)0.0017 (7)0.0063 (7)−0.0007 (6)
O20.0448 (9)0.0312 (7)0.0485 (9)0.0077 (6)0.0168 (7)0.0049 (7)
N10.0286 (8)0.0273 (8)0.0282 (8)−0.0024 (6)0.0107 (6)−0.0035 (6)
C10.0306 (9)0.0271 (9)0.0278 (10)0.0021 (7)0.0116 (7)0.0006 (7)
C20.0252 (9)0.0253 (9)0.0259 (9)−0.0015 (7)0.0075 (7)−0.0021 (7)
C30.0256 (8)0.0259 (9)0.0270 (9)−0.0015 (7)0.0070 (7)−0.0027 (7)
C40.0370 (10)0.0313 (10)0.0336 (11)0.0019 (8)0.0167 (8)−0.0013 (8)
C5A0.046 (3)0.031 (2)0.046 (3)0.0047 (19)0.027 (3)−0.0045 (17)
C6A0.058 (4)0.028 (2)0.051 (3)−0.003 (2)0.030 (3)−0.0095 (18)
C5B0.044 (4)0.038 (3)0.037 (3)−0.001 (3)0.016 (3)−0.010 (2)
C6B0.047 (4)0.033 (3)0.047 (4)0.005 (3)0.017 (3)−0.011 (2)
C70.0453 (11)0.0235 (10)0.0386 (11)−0.0014 (8)0.0125 (9)−0.0031 (8)
C80.0262 (9)0.0260 (9)0.0291 (10)−0.0018 (7)0.0073 (7)−0.0033 (7)
C90.0272 (9)0.0231 (8)0.0278 (9)−0.0023 (7)0.0092 (7)0.0002 (7)
C100.0308 (9)0.0267 (9)0.0267 (9)−0.0021 (7)0.0154 (7)−0.0011 (7)
C110.0352 (10)0.0351 (11)0.0354 (11)−0.0033 (8)0.0119 (8)−0.0009 (8)
C120.0424 (12)0.0498 (14)0.0425 (13)−0.0135 (10)0.0144 (10)−0.0113 (10)
C130.0623 (15)0.0338 (12)0.0562 (15)−0.0214 (11)0.0295 (12)−0.0137 (11)
C140.0671 (15)0.0253 (10)0.0479 (13)−0.0045 (10)0.0279 (12)0.0012 (9)
C150.0463 (12)0.0289 (10)0.0323 (11)−0.0002 (8)0.0169 (9)0.0023 (8)
C160.0282 (9)0.0281 (9)0.0279 (9)−0.0009 (7)0.0086 (7)−0.0006 (7)
C170.0256 (9)0.0311 (10)0.0288 (10)0.0003 (7)0.0085 (7)−0.0031 (8)
C180.0289 (9)0.0342 (10)0.0286 (10)−0.0008 (7)0.0107 (8)0.0012 (8)
C190.0290 (9)0.0471 (12)0.0318 (10)0.0034 (8)0.0140 (8)−0.0043 (9)
C200.0329 (10)0.0377 (11)0.0387 (11)0.0095 (8)0.0123 (9)−0.0047 (9)
C210.0297 (9)0.0304 (10)0.0352 (11)0.0042 (7)0.0061 (8)0.0004 (8)
C220.0291 (9)0.0356 (10)0.0270 (9)0.0015 (7)0.0105 (8)−0.0007 (8)
C230.0443 (12)0.0361 (12)0.0447 (13)−0.0001 (9)0.0121 (10)0.0061 (9)
Br1—C181.903 (2)C6B—C71.603 (7)
S1—C81.7314 (19)C7—H7AA0.9900
S1—C91.7506 (19)C7—H7AB0.9900
O1—C11.222 (2)C7—H7BC0.9900
O2—C211.365 (3)C7—H7BD0.9900
O2—C231.421 (3)C7—C81.504 (3)
N1—C91.380 (3)C10—C111.395 (3)
N1—C161.277 (2)C10—C151.386 (3)
C1—C21.489 (3)C11—H110.9500
C1—C101.491 (3)C11—C121.387 (3)
C2—C31.433 (3)C12—H120.9500
C2—C91.374 (3)C12—C131.391 (4)
C3—C41.510 (3)C13—H130.9500
C3—C81.360 (3)C13—C141.379 (4)
C4—H4AA0.9900C14—H140.9500
C4—H4AB0.9900C14—C151.389 (3)
C4—H4BC0.9900C15—H150.9500
C4—H4BD0.9900C16—H160.9500
C4—C5A1.506 (4)C16—C171.467 (3)
C4—C5B1.575 (6)C17—C181.394 (3)
C5A—H5AA0.9900C17—C221.402 (3)
C5A—H5AB0.9900C18—C191.389 (3)
C5A—C6A1.519 (8)C19—H190.9500
C6A—H6AA0.9900C19—C201.375 (3)
C6A—H6AB0.9900C20—H200.9500
C6A—C71.526 (5)C20—C211.401 (3)
C5B—H5BA0.9900C21—C221.379 (3)
C5B—H5BB0.9900C22—H220.9500
C5B—C6B1.494 (12)C23—H23A0.9800
C6B—H6BA0.9900C23—H23B0.9800
C6B—H6BB0.9900C23—H23C0.9800
C8—S1—C991.38 (9)C8—C7—H7AA110.1
C21—O2—C23116.75 (16)C8—C7—H7AB110.1
C16—N1—C9121.68 (17)C8—C7—H7BC109.5
O1—C1—C2119.22 (18)C8—C7—H7BD109.5
O1—C1—C10119.64 (18)C3—C8—S1112.26 (14)
C2—C1—C10121.13 (17)C3—C8—C7126.05 (18)
C3—C2—C1123.31 (17)C7—C8—S1121.68 (15)
C9—C2—C1123.55 (17)N1—C9—S1125.24 (14)
C9—C2—C3112.97 (17)C2—C9—S1110.80 (15)
C2—C3—C4126.00 (17)C2—C9—N1123.88 (18)
C8—C3—C2112.57 (17)C11—C10—C1122.00 (18)
C8—C3—C4121.43 (17)C15—C10—C1118.12 (18)
C3—C4—H4AA109.6C15—C10—C11119.77 (19)
C3—C4—H4AB109.6C10—C11—H11120.1
C3—C4—H4BC109.7C12—C11—C10119.8 (2)
C3—C4—H4BD109.7C12—C11—H11120.1
C3—C4—C5B110.0 (3)C11—C12—H12120.0
H4AA—C4—H4AB108.1C11—C12—C13120.0 (2)
H4BC—C4—H4BD108.2C13—C12—H12120.0
C5A—C4—C3110.4 (2)C12—C13—H13119.9
C5A—C4—H4AA109.6C14—C13—C12120.2 (2)
C5A—C4—H4AB109.6C14—C13—H13119.9
C5B—C4—H4BC109.7C13—C14—H14120.0
C5B—C4—H4BD109.7C13—C14—C15120.0 (2)
C4—C5A—H5AA109.3C15—C14—H14120.0
C4—C5A—H5AB109.3C10—C15—C14120.2 (2)
C4—C5A—C6A111.6 (5)C10—C15—H15119.9
H5AA—C5A—H5AB108.0C14—C15—H15119.9
C6A—C5A—H5AA109.3N1—C16—H16119.9
C6A—C5A—H5AB109.3N1—C16—C17120.24 (18)
C5A—C6A—H6AA109.7C17—C16—H16119.9
C5A—C6A—H6AB109.7C18—C17—C16122.95 (18)
C5A—C6A—C7109.8 (5)C18—C17—C22118.20 (18)
H6AA—C6A—H6AB108.2C22—C17—C16118.85 (17)
C7—C6A—H6AA109.7C17—C18—Br1121.43 (15)
C7—C6A—H6AB109.7C19—C18—Br1117.50 (15)
C4—C5B—H5BA109.5C19—C18—C17121.06 (19)
C4—C5B—H5BB109.5C18—C19—H19120.0
H5BA—C5B—H5BB108.1C20—C19—C18120.08 (19)
C6B—C5B—C4110.7 (6)C20—C19—H19120.0
C6B—C5B—H5BA109.5C19—C20—H20120.1
C6B—C5B—H5BB109.5C19—C20—C21119.75 (19)
C5B—C6B—H6BA109.9C21—C20—H20120.1
C5B—C6B—H6BB109.9O2—C21—C20115.47 (18)
C5B—C6B—C7108.8 (6)O2—C21—C22124.50 (19)
H6BA—C6B—H6BB108.3C22—C21—C20120.02 (19)
C7—C6B—H6BA109.9C17—C22—H22119.6
C7—C6B—H6BB109.9C21—C22—C17120.81 (18)
C6A—C7—H7AA110.1C21—C22—H22119.6
C6A—C7—H7AB110.1O2—C23—H23A109.5
C6B—C7—H7BC109.5O2—C23—H23B109.5
C6B—C7—H7BD109.5O2—C23—H23C109.5
H7AA—C7—H7AB108.4H23A—C23—H23B109.5
H7BC—C7—H7BD108.1H23A—C23—H23C109.5
C8—C7—C6A107.9 (2)H23B—C23—H23C109.5
C8—C7—C6B110.6 (3)
Br1—C18—C19—C20177.08 (17)C5B—C6B—C7—C8−43.3 (8)
O1—C1—C2—C342.7 (3)C6B—C7—C8—S1−169.4 (4)
O1—C1—C2—C9−132.2 (2)C6B—C7—C8—C311.4 (5)
O1—C1—C10—C11−153.30 (19)C8—S1—C9—N1177.94 (17)
O1—C1—C10—C1522.8 (3)C8—S1—C9—C20.96 (15)
O2—C21—C22—C17177.79 (19)C8—C3—C4—C5A−13.9 (4)
N1—C16—C17—C18169.70 (19)C8—C3—C4—C5B19.7 (5)
N1—C16—C17—C22−9.9 (3)C9—S1—C8—C3−1.23 (15)
C1—C2—C3—C44.7 (3)C9—S1—C8—C7179.49 (17)
C1—C2—C3—C8−175.86 (17)C9—N1—C16—C17−179.50 (17)
C1—C2—C9—S1174.92 (15)C9—C2—C3—C4−179.91 (18)
C1—C2—C9—N1−2.1 (3)C9—C2—C3—C8−0.4 (2)
C1—C10—C11—C12174.01 (19)C10—C1—C2—C3−136.11 (19)
C1—C10—C15—C14−175.38 (19)C10—C1—C2—C948.9 (3)
C2—C1—C10—C1125.5 (3)C10—C11—C12—C131.4 (3)
C2—C1—C10—C15−158.38 (18)C11—C10—C15—C140.8 (3)
C2—C3—C4—C5A165.5 (3)C11—C12—C13—C140.5 (4)
C2—C3—C4—C5B−160.9 (4)C12—C13—C14—C15−1.7 (4)
C2—C3—C8—S11.2 (2)C13—C14—C15—C101.1 (3)
C2—C3—C8—C7−179.59 (18)C15—C10—C11—C12−2.0 (3)
C3—C2—C9—S1−0.5 (2)C16—N1—C9—S13.8 (3)
C3—C2—C9—N1−177.51 (17)C16—N1—C9—C2−179.59 (19)
C3—C4—C5A—C6A46.7 (7)C16—C17—C18—Br13.6 (3)
C3—C4—C5B—C6B−53.2 (8)C16—C17—C18—C19−176.87 (19)
C4—C3—C8—S1−179.33 (15)C16—C17—C22—C21178.74 (18)
C4—C3—C8—C7−0.1 (3)C17—C18—C19—C20−2.4 (3)
C4—C5A—C6A—C7−67.6 (8)C18—C17—C22—C21−0.9 (3)
C4—C5B—C6B—C765.5 (9)C18—C19—C20—C210.2 (3)
C5A—C4—C5B—C6B43.5 (7)C19—C20—C21—O2−177.5 (2)
C5A—C6A—C7—C6B−51.1 (7)C19—C20—C21—C221.6 (3)
C5A—C6A—C7—C849.3 (7)C20—C21—C22—C17−1.3 (3)
C6A—C7—C8—S1161.2 (4)C22—C17—C18—Br1−176.77 (14)
C6A—C7—C8—C3−17.9 (4)C22—C17—C18—C192.7 (3)
C5B—C4—C5A—C6A−48.4 (6)C23—O2—C21—C20166.49 (19)
C5B—C6B—C7—C6A46.2 (7)C23—O2—C21—C22−12.6 (3)
D—H···AD—HH···AD···AD—H···A
C20—H20···O2i0.952.583.294 (3)132
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
C20—H20⋯O2i 0.952.583.294 (3)132

Symmetry code: (i) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  The development of the first catalyzed reaction of ketenes and imines: catalytic, asymmetric synthesis of beta-lactams.

Authors:  Andrew E Taggi; Ahmed M Hafez; Harald Wack; Brandon Young; Dana Ferraris; Thomas Lectka
Journal:  J Am Chem Soc       Date:  2002-06-12       Impact factor: 15.419

3.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  3 in total
  1 in total

1.  Crystal structure of 3-benzoyl-2-[(5-bromo-2-hydroxy-3-meth-oxy-benzyl-idene)amino]-4,5,6,7-tetra-hydro-benzo[b]thio-phene.

Authors:  Manpreet Kaur; Jerry P Jasinski; H S Yathirajan; Christopher Glidewell; K Byrappa
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2015-01-17
  1 in total

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