Literature DB >> 24860377

1,10-Phenanthroline-5,6-dione ethanol monosolvate.

Jing-Wei Dai1, Zhao-Yang Li2, Osamu Sato1.   

Abstract

In the title compound, C12H6N2O2·C2H5OH, the mol-ecule of the 1,10-phenanthroline-5,6-dione is approximately planar, with a maximum deviation of 0.051 (1) Å. In the crystal, mol-ecules are linked by O-H⋯N and weak C-H⋯O hydrogen bonds, forming supra-molecular chains propagating along [110]. π-π stacking inter-actions are observed between the pyridine rings of neighbouring chains, the centroid-centroid separations being 3.6226 (11) and 3.7543 (11) Å.

Entities:  

Year:  2014        PMID: 24860377      PMCID: PMC4011276          DOI: 10.1107/S1600536814008241

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to and applications of 1,10-phenanthroline-5,6-dione, see: Smith & Cagle (1947 ▶); Ma et al. (2010 ▶); Goss & Abruna (1985 ▶); Murphy et al. (2011 ▶); Wu et al. (1996 ▶); Pinczewska et al. (2012 ▶); Poteet & MacDonnell (2013 ▶); Wu et al. (2002 ▶); Poteet et al. 2013 ▶); Paw et al. (1998 ▶). For the synthesis, see: Paw & Eisenberg (1997 ▶). For a related structure, see: Calderazzo et al. (1999 ▶).

Experimental

Crystal data

C12H6N2O2·C2H6O M = 256.26 Triclinic, a = 7.3064 (15) Å b = 9.1055 (18) Å c = 9.7291 (19) Å α = 96.47 (3)° β = 101.68 (3)° γ = 109.83 (3)° V = 584.6 (2) Å3 Z = 2 Mo Kα radiation μ = 0.10 mm−1 T = 123 K 0.20 × 0.20 × 0.20 mm

Data collection

Rigaku Saturn724+ diffractometer 5059 measured reflections 2252 independent reflections 2074 reflections with I > 2σ(I) R int = 0.020

Refinement

R[F 2 > 2σ(F 2)] = 0.040 wR(F 2) = 0.114 S = 1.06 2252 reflections 185 parameters 1 restraint H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.24 e Å−3 Δρmin = −0.17 e Å−3 Data collection: CrystalClear (Rigaku, 2008 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶) and Mercury (Macrae et al., 2008 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536814008241/xu5783sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536814008241/xu5783Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S1600536814008241/xu5783Isup3.cml CCDC reference: 996896 Additional supporting information: crystallographic information; 3D view; checkCIF report
C12H6N2O2·C2H6OZ = 2
Mr = 256.26F(000) = 268
Triclinic, P1Dx = 1.456 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 7.3064 (15) ÅCell parameters from 2355 reflections
b = 9.1055 (18) Åθ = 3.1–30.2°
c = 9.7291 (19) ŵ = 0.10 mm1
α = 96.47 (3)°T = 123 K
β = 101.68 (3)°Block, yellow
γ = 109.83 (3)°0.20 × 0.20 × 0.20 mm
V = 584.6 (2) Å3
Rigaku Saturn724+ diffractometer2074 reflections with I > 2σ(I)
Radiation source: Rotating AnodeRint = 0.020
Confocal monochromatorθmax = 26.0°, θmin = 3.1°
Detector resolution: 28.5714 pixels mm-1h = −9→9
ω scansk = −11→11
5059 measured reflectionsl = −11→11
2252 independent reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.040Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.114H atoms treated by a mixture of independent and constrained refinement
S = 1.06w = 1/[σ2(Fo2) + (0.0709P)2 + 0.118P] where P = (Fo2 + 2Fc2)/3
2252 reflections(Δ/σ)max < 0.001
185 parametersΔρmax = 0.24 e Å3
1 restraintΔρmin = −0.17 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C40.66468 (17)0.96363 (14)0.27101 (12)0.0211 (3)
C110.69855 (17)0.93910 (13)0.52865 (12)0.0196 (3)
C50.50156 (18)0.80403 (14)0.22423 (12)0.0237 (3)
C70.54977 (17)0.78514 (14)0.49173 (12)0.0211 (3)
C60.43997 (17)0.70995 (13)0.34035 (13)0.0239 (3)
C120.75757 (16)1.02974 (13)0.41609 (12)0.0200 (3)
C80.50365 (18)0.70329 (14)0.60099 (13)0.0250 (3)
H80.40420.59870.57940.030*
C90.60544 (18)0.77748 (15)0.74108 (13)0.0270 (3)
H90.57870.72480.81790.032*
C30.72616 (18)1.05260 (15)0.16952 (13)0.0252 (3)
H30.66511.01080.07040.030*
C10.95979 (18)1.25750 (14)0.36088 (14)0.0262 (3)
H11.06321.36030.39190.031*
C100.74812 (18)0.93131 (15)0.76688 (13)0.0261 (3)
H100.81660.98180.86360.031*
C20.87625 (19)1.20164 (15)0.21448 (14)0.0272 (3)
H20.92131.26440.14750.033*
O10.41332 (14)0.74720 (11)0.09901 (9)0.0331 (3)
O20.30275 (14)0.58111 (10)0.30567 (10)0.0333 (3)
N20.79532 (15)1.01274 (12)0.66490 (10)0.0237 (2)
N10.90359 (15)1.17542 (12)0.46054 (11)0.0233 (2)
C150.8686 (2)0.65765 (16)0.07549 (14)0.0336 (3)
H15A0.83250.75030.06210.050*
H15B0.83720.5885−0.01770.050*
H15C1.01300.69340.12110.050*
C140.7508 (2)0.56671 (15)0.16901 (14)0.0312 (3)
O30.76490 (13)0.66129 (10)0.30034 (9)0.0291 (2)
H14A0.598 (3)0.5214 (19)0.1167 (17)0.042 (4)*
H14B0.797 (3)0.479 (2)0.1910 (18)0.048 (5)*
H3O0.8864 (17)0.719 (2)0.3431 (19)0.058 (5)*
U11U22U33U12U13U23
C40.0190 (6)0.0245 (6)0.0236 (6)0.0108 (5)0.0073 (4)0.0073 (5)
C110.0173 (5)0.0214 (6)0.0226 (6)0.0091 (4)0.0069 (4)0.0051 (4)
C50.0215 (6)0.0259 (6)0.0238 (6)0.0102 (5)0.0044 (5)0.0036 (5)
C70.0188 (6)0.0219 (6)0.0252 (6)0.0091 (5)0.0077 (4)0.0064 (4)
C60.0205 (6)0.0222 (6)0.0291 (6)0.0078 (5)0.0068 (5)0.0043 (5)
C120.0168 (5)0.0216 (6)0.0238 (6)0.0086 (4)0.0070 (4)0.0053 (4)
C80.0217 (6)0.0231 (6)0.0330 (7)0.0085 (5)0.0107 (5)0.0100 (5)
C90.0266 (6)0.0333 (7)0.0277 (6)0.0138 (5)0.0118 (5)0.0145 (5)
C30.0242 (6)0.0326 (7)0.0240 (6)0.0143 (5)0.0085 (5)0.0095 (5)
C10.0215 (6)0.0234 (6)0.0355 (7)0.0065 (5)0.0113 (5)0.0107 (5)
C100.0260 (6)0.0332 (7)0.0215 (6)0.0124 (5)0.0077 (5)0.0069 (5)
C20.0268 (6)0.0324 (7)0.0318 (7)0.0150 (5)0.0157 (5)0.0163 (5)
O10.0338 (5)0.0333 (5)0.0238 (5)0.0072 (4)0.0005 (4)0.0019 (4)
O20.0290 (5)0.0249 (5)0.0346 (5)−0.0012 (4)0.0051 (4)0.0027 (4)
N20.0234 (5)0.0257 (5)0.0222 (5)0.0088 (4)0.0070 (4)0.0044 (4)
N10.0200 (5)0.0223 (5)0.0276 (5)0.0068 (4)0.0076 (4)0.0060 (4)
C150.0321 (7)0.0332 (7)0.0282 (7)0.0040 (5)0.0083 (5)0.0019 (5)
C140.0388 (8)0.0250 (6)0.0296 (7)0.0104 (5)0.0116 (6)0.0043 (5)
O30.0255 (5)0.0329 (5)0.0261 (5)0.0092 (4)0.0059 (4)0.0007 (4)
C4—C31.3950 (17)C3—C21.3776 (19)
C4—C121.3995 (17)C3—H30.9500
C4—C51.4818 (18)C1—N11.3355 (16)
C11—N21.3436 (16)C1—C21.3907 (18)
C11—C71.4037 (17)C1—H10.9500
C11—C121.4899 (16)C10—N21.3357 (16)
C5—O11.2171 (15)C10—H100.9500
C5—C61.5411 (17)C2—H20.9500
C7—C81.3972 (17)C15—C141.5026 (18)
C7—C61.4843 (18)C15—H15A0.9800
C6—O21.2128 (16)C15—H15B0.9800
C12—N11.3448 (16)C15—H15C0.9800
C8—C91.3813 (18)C14—O31.4225 (15)
C8—H80.9500C14—H14A1.040 (18)
C9—C101.3914 (19)C14—H14B0.995 (18)
C9—H90.9500O3—H3O0.850 (10)
C3—C4—C12118.58 (11)C4—C3—H3120.3
C3—C4—C5119.93 (11)N1—C1—C2124.01 (11)
C12—C4—C5121.48 (11)N1—C1—H1118.0
N2—C11—C7122.79 (11)C2—C1—H1118.0
N2—C11—C12116.36 (10)N2—C10—C9124.42 (12)
C7—C11—C12120.85 (11)N2—C10—H10117.8
O1—C5—C4122.47 (12)C9—C10—H10117.8
O1—C5—C6119.54 (11)C3—C2—C1117.99 (11)
C4—C5—C6117.97 (10)C3—C2—H2121.0
C8—C7—C11118.69 (11)C1—C2—H2121.0
C8—C7—C6119.96 (11)C10—N2—C11117.08 (11)
C11—C7—C6121.35 (11)C1—N1—C12117.77 (11)
O2—C6—C7122.90 (12)C14—C15—H15A109.5
O2—C6—C5119.48 (11)C14—C15—H15B109.5
C7—C6—C5117.60 (10)H15A—C15—H15B109.5
N1—C12—C4122.28 (11)C14—C15—H15C109.5
N1—C12—C11117.04 (10)H15A—C15—H15C109.5
C4—C12—C11120.68 (11)H15B—C15—H15C109.5
C9—C8—C7118.69 (11)O3—C14—C15114.19 (11)
C9—C8—H8120.7O3—C14—H14A104.6 (9)
C7—C8—H8120.7C15—C14—H14A109.3 (9)
C8—C9—C10118.31 (11)O3—C14—H14B108.5 (10)
C8—C9—H9120.8C15—C14—H14B109.8 (10)
C10—C9—H9120.8H14A—C14—H14B110.5 (14)
C2—C3—C4119.37 (12)C14—O3—H3O111.5 (14)
C2—C3—H3120.3
D—H···AD—HH···AD···AD—H···A
O3—H3O···N1i0.85 (1)2.08 (1)2.8258 (19)146 (2)
C1—H1···O2ii0.952.533.3381 (19)143
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O3—H3O⋯N1i 0.85 (1)2.08 (1)2.8258 (19)146 (2)
C1—H1⋯O2ii 0.952.533.3381 (19)143

Symmetry codes: (i) ; (ii) .

  7 in total

1.  Synthesis, Characterization, and Spectroscopy of Dipyridocatecholate Complexes of Platinum.

Authors:  Witold Paw; Richard Eisenberg
Journal:  Inorg Chem       Date:  1997-05-21       Impact factor: 5.165

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  The improved synthesis of 5-nitro-1,10-phenanthroline.

Authors:  G F SMITH; F W CAGLE
Journal:  J Org Chem       Date:  1947-11       Impact factor: 4.354

4.  Water detection by "turn on" fluorescence of the quinone-containing complexes [Ru(phen)2(1,10-phenanthroline-5,6-dione)2+] and [Ru(phenanthroline-5,6-dione)3]2+.

Authors:  Steven A Poteet; Frederick M MacDonnell
Journal:  Dalton Trans       Date:  2013-08-07       Impact factor: 4.390

5.  Dipyridocatecholate-Bridged Complexes of Platinum and Ruthenium Diimine Chromophores.

Authors:  Witold Paw; William B. Connick; Richard Eisenberg
Journal:  Inorg Chem       Date:  1998-08-10       Impact factor: 5.165

6.  High-throughput synthesis and electrochemical screening of a library of modified electrodes for NADH oxidation.

Authors:  Aleksandra Pinczewska; Maciej Sosna; Sally Bloodworth; Jeremy D Kilburn; Philip N Bartlett
Journal:  J Am Chem Soc       Date:  2012-10-22       Impact factor: 15.419

7.  Cleavage of DNA by proton-coupled electron transfer to a photoexcited, hydrated Ru(II) 1,10-phenanthroline-5,6-dione complex.

Authors:  Steven A Poteet; Marek B Majewski; Zachary S Breitbach; Cynthia A Griffith; Shreeyukta Singh; Daniel W Armstrong; Michael O Wolf; Frederick M MacDonnell
Journal:  J Am Chem Soc       Date:  2013-02-05       Impact factor: 15.419

  7 in total

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