Literature DB >> 24860328

Methyl ({[(4E)-1,3-dimethyl-2,6-di-phenyl-piperidin-4-yl-idene]amino}-oxy)acetate.

T Mohandas1, M Velayutham Pillai2, T Vidhyasagar2, A Pasupathy3, P Sakthivel4.   

Abstract

In the title compound, C22H26N2O3, the piperidine ring exhibits a chair conformation. The phenyl rings attached to the piperidine at the 2- and 6-positions have axial orientations. These rings make a dihedral angle of 49.75 (11)°. The amino-oxy acetate group attached at the 4-position has an equatorial orientation. In the crystal, inversion dimers linked by pairs of C-H⋯π inter-actions occur.

Entities:  

Year:  2014        PMID: 24860328      PMCID: PMC4011218          DOI: 10.1107/S1600536814006667

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background and the importance of oxime ethers, see: Crichlow et al. (2007 ▶). For a study of the in vitro anti­proliferative activity of oxyme ether derivatives, see: Parthiban et al. (2011 ▶). For their effects on the senescence of cut carnation flowers, see: Zeng et al. (2012 ▶). For ring conformations, see: Cremer & Pople (1975 ▶). For related structures, see: Park et al. (2012a ▶,b ▶).

Experimental

Crystal data

C22H26N2O3 M = 366.45 Monoclinic, a = 8.1662 (9) Å b = 15.0229 (16) Å c = 16.2889 (19) Å β = 93.903 (6)° V = 1993.7 (4) Å3 Z = 4 Mo Kα radiation μ = 0.08 mm−1 T = 295 K 0.35 × 0.35 × 0.30 mm

Data collection

Bruker Kappa APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2008 ▶) T min = 0.972, T max = 0.976 17582 measured reflections 17582 independent reflections 12046 reflections with I > 2σ(I)

Refinement

R[F 2 > 2σ(F 2)] = 0.071 wR(F 2) = 0.214 S = 1.06 17582 reflections 249 parameters H-atom parameters constrained Δρmax = 0.31 e Å−3 Δρmin = −0.29 e Å−3 Data collection: APEX2 (Bruker, 2008 ▶); cell refinement: APEX2 and SAINT (Bruker, 2008 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶); software used to prepare material for publication: PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536814006667/rk2422sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536814006667/rk2422Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S1600536814006667/rk2422Isup3.cml CCDC reference: 993682 Additional supporting information: crystallographic information; 3D view; checkCIF report
C22H26N2O3F(000) = 784
Mr = 366.45Dx = 1.221 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 17582 reflections
a = 8.1662 (9) Åθ = 1.9–25.7°
b = 15.0229 (16) ŵ = 0.08 mm1
c = 16.2889 (19) ÅT = 295 K
β = 93.903 (6)°Block, colourless
V = 1993.7 (4) Å30.35 × 0.35 × 0.30 mm
Z = 4
Bruker Kappa APEXII CCD diffractometer17582 independent reflections
Radiation source: fine–focus sealed tube12046 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.000
Detector resolution: 18.4 pixels mm-1θmax = 25.7°, θmin = 1.9°
ω and φ scansh = −9→9
Absorption correction: multi-scan (SADABS; Bruker, 2008)k = −18→18
Tmin = 0.972, Tmax = 0.976l = −19→16
17582 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.071H-atom parameters constrained
wR(F2) = 0.214w = 1/[σ2(Fo2) + (0.0418P)2 + 3.4429P] where P = (Fo2 + 2Fc2)/3
S = 1.06(Δ/σ)max < 0.001
17582 reflectionsΔρmax = 0.31 e Å3
249 parametersΔρmin = −0.29 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0042 (7)
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All s.u.'s are estimated from the variances of the (full) variance–covariance matrix. The cell s.u.'s are taken into account in the estimation of distances, angles and torsion angles.
Refinement. Refinement of F2 against ALL reflections. The weighted R–factor wR and goodness of fit S are based on F2, conventional R–factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R–factors(gt) etc. and is not relevant to the choice of reflections for refinement. R–factors based on F2 are statistically about twice as large as those based on F, and R–factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.68977 (19)0.49995 (10)0.43999 (8)0.0606 (6)
O20.7546 (2)0.43922 (10)0.65189 (9)0.0649 (6)
O30.6248 (2)0.36381 (11)0.54968 (10)0.0771 (7)
N10.83698 (18)0.48449 (10)0.16289 (9)0.0383 (5)
N20.7999 (2)0.43901 (11)0.40538 (10)0.0467 (6)
C10.5090 (3)0.55836 (14)0.10496 (12)0.0499 (7)
C20.3910 (3)0.60714 (17)0.06143 (13)0.0619 (9)
C30.3809 (3)0.69704 (19)0.07252 (15)0.0684 (10)
C40.4887 (3)0.73784 (16)0.12720 (17)0.0680 (10)
C50.6074 (3)0.68953 (14)0.17255 (14)0.0529 (8)
C60.6190 (2)0.59865 (12)0.16163 (11)0.0381 (7)
C70.7430 (2)0.54460 (12)0.21323 (11)0.0394 (7)
C80.6541 (2)0.49215 (14)0.27705 (11)0.0459 (7)
C90.7736 (2)0.43693 (13)0.32754 (11)0.0390 (7)
C100.8732 (2)0.37623 (12)0.27849 (11)0.0401 (7)
C110.9567 (2)0.43131 (12)0.21322 (11)0.0387 (6)
C121.0538 (3)0.37151 (13)0.15962 (12)0.0427 (7)
C131.2220 (3)0.37356 (15)0.16396 (14)0.0583 (9)
C141.3111 (3)0.31608 (18)0.11732 (17)0.0757 (11)
C151.2312 (4)0.25588 (19)0.06656 (17)0.0820 (11)
C161.0624 (4)0.25213 (18)0.06119 (15)0.0792 (11)
C170.9742 (3)0.30997 (15)0.10737 (13)0.0575 (8)
C180.9212 (3)0.53774 (15)0.10310 (13)0.0606 (9)
C190.9942 (3)0.31926 (14)0.32933 (13)0.0579 (8)
C200.7357 (3)0.50883 (14)0.52479 (11)0.0542 (8)
C210.6970 (3)0.42816 (15)0.57362 (13)0.0490 (8)
C220.7303 (3)0.36794 (16)0.70832 (15)0.0774 (10)
H10.515170.497290.096310.0598*
H20.317200.578860.024040.0743*
H30.300770.729990.042790.0822*
H40.482790.799150.134340.0816*
H50.679450.718310.210450.0635*
H70.819930.585690.242340.0473*
H8A0.599300.532960.312320.0551*
H8B0.571490.454130.249520.0551*
H100.796270.335610.248720.0481*
H111.033880.472450.242140.0465*
H131.277400.414200.198800.0700*
H141.425140.318700.120740.0909*
H151.290840.217210.035440.0981*
H161.007860.210870.026650.0952*
H170.860130.307590.103350.0690*
H18A0.991360.580480.131740.0910*
H18B0.841440.568240.067360.0910*
H18C0.985950.499350.071090.0910*
H19A1.080190.356180.353840.0869*
H19B1.040530.275610.294620.0869*
H19C0.938860.289810.371810.0869*
H20A0.679180.559730.546190.0650*
H20B0.852630.520400.531760.0650*
H22A0.641400.331020.686960.1162*
H22B0.704580.392080.760470.1162*
H22C0.828700.333010.715320.1162*
U11U22U33U12U13U23
O10.0757 (11)0.0737 (11)0.0332 (8)0.0271 (9)0.0097 (7)−0.0022 (7)
O20.0901 (12)0.0665 (10)0.0372 (9)−0.0126 (9)−0.0029 (8)0.0039 (8)
O30.1051 (14)0.0639 (11)0.0629 (11)−0.0216 (10)0.0111 (10)−0.0182 (9)
N10.0392 (9)0.0444 (9)0.0321 (9)0.0053 (7)0.0094 (8)0.0040 (7)
N20.0561 (11)0.0505 (10)0.0343 (10)0.0116 (9)0.0086 (8)−0.0057 (8)
C10.0560 (13)0.0519 (13)0.0414 (12)0.0069 (11)0.0010 (11)0.0031 (10)
C20.0577 (14)0.0802 (18)0.0469 (14)0.0085 (13)−0.0040 (12)0.0074 (13)
C30.0623 (16)0.081 (2)0.0624 (17)0.0243 (14)0.0081 (14)0.0244 (14)
C40.0731 (17)0.0438 (14)0.090 (2)0.0148 (13)0.0279 (15)0.0214 (14)
C50.0514 (13)0.0458 (13)0.0627 (15)0.0006 (11)0.0123 (12)−0.0008 (11)
C60.0406 (11)0.0401 (12)0.0344 (11)0.0043 (9)0.0078 (9)0.0030 (9)
C70.0425 (12)0.0414 (11)0.0346 (11)0.0001 (9)0.0043 (9)−0.0041 (9)
C80.0427 (12)0.0629 (14)0.0328 (11)0.0124 (10)0.0071 (10)0.0051 (10)
C90.0405 (11)0.0458 (12)0.0315 (11)0.0015 (9)0.0091 (9)0.0032 (9)
C100.0438 (11)0.0429 (12)0.0342 (11)0.0044 (9)0.0065 (9)−0.0005 (9)
C110.0350 (10)0.0447 (11)0.0365 (11)−0.0002 (9)0.0028 (9)−0.0046 (9)
C120.0478 (13)0.0468 (12)0.0349 (11)0.0055 (10)0.0130 (10)0.0030 (9)
C130.0483 (14)0.0612 (15)0.0672 (16)0.0038 (11)0.0174 (12)0.0001 (12)
C140.0597 (16)0.0826 (19)0.088 (2)0.0216 (14)0.0294 (15)0.0069 (16)
C150.099 (2)0.079 (2)0.0726 (19)0.0311 (17)0.0398 (17)−0.0027 (16)
C160.101 (2)0.0803 (19)0.0580 (16)0.0145 (16)0.0181 (16)−0.0243 (14)
C170.0589 (14)0.0685 (16)0.0455 (13)0.0077 (12)0.0061 (12)−0.0092 (12)
C180.0643 (15)0.0670 (16)0.0537 (14)0.0106 (12)0.0265 (12)0.0184 (12)
C190.0609 (14)0.0614 (15)0.0524 (14)0.0172 (12)0.0105 (12)0.0028 (11)
C200.0788 (16)0.0557 (14)0.0283 (11)0.0030 (12)0.0058 (11)−0.0052 (10)
C210.0581 (13)0.0516 (14)0.0383 (12)0.0028 (12)0.0107 (11)−0.0102 (10)
C220.105 (2)0.0694 (17)0.0589 (16)0.0111 (15)0.0129 (15)0.0156 (13)
O1—N21.426 (2)C20—C211.495 (3)
O1—C201.413 (2)C1—H10.9300
O2—C211.339 (3)C2—H20.9300
O2—C221.434 (3)C3—H30.9300
O3—C211.185 (3)C4—H40.9300
N1—C71.471 (2)C5—H50.9300
N1—C111.469 (2)C7—H70.9800
N1—C181.467 (3)C8—H8A0.9700
N2—C91.272 (2)C8—H8B0.9700
C1—C21.369 (3)C10—H100.9800
C1—C61.383 (3)C11—H110.9800
C2—C31.366 (4)C13—H130.9300
C3—C41.355 (4)C14—H140.9300
C4—C51.384 (3)C15—H150.9300
C5—C61.381 (3)C16—H160.9300
C6—C71.508 (2)C17—H170.9300
C7—C81.527 (3)C18—H18A0.9600
C8—C91.486 (3)C18—H18B0.9600
C9—C101.490 (3)C18—H18C0.9600
C10—C111.542 (2)C19—H19A0.9600
C10—C191.511 (3)C19—H19B0.9600
C11—C121.514 (3)C19—H19C0.9600
C12—C131.371 (3)C20—H20A0.9700
C12—C171.388 (3)C20—H20B0.9700
C13—C141.388 (4)C22—H22A0.9600
C14—C151.362 (4)C22—H22B0.9600
C15—C161.376 (5)C22—H22C0.9600
C16—C171.383 (4)
N2—O1—C20108.33 (15)C6—C5—H5120.00
C21—O2—C22117.57 (18)N1—C7—H7108.00
C7—N1—C11112.06 (14)C6—C7—H7108.00
C7—N1—C18108.74 (15)C8—C7—H7108.00
C11—N1—C18110.05 (15)C7—C8—H8A110.00
O1—N2—C9109.98 (15)C7—C8—H8B110.00
C2—C1—C6120.9 (2)C9—C8—H8A110.00
C1—C2—C3120.5 (2)C9—C8—H8B110.00
C2—C3—C4119.5 (2)H8A—C8—H8B108.00
C3—C4—C5120.9 (2)C9—C10—H10107.00
C4—C5—C6120.1 (2)C11—C10—H10107.00
C1—C6—C5118.14 (18)C19—C10—H10107.00
C1—C6—C7121.15 (17)N1—C11—H11108.00
C5—C6—C7120.65 (17)C10—C11—H11108.00
N1—C7—C6112.08 (14)C12—C11—H11108.00
N1—C7—C8110.68 (15)C12—C13—H13119.00
C6—C7—C8108.96 (14)C14—C13—H13119.00
C7—C8—C9109.89 (14)C13—C14—H14120.00
N2—C9—C8126.73 (17)C15—C14—H14120.00
N2—C9—C10119.23 (16)C14—C15—H15120.00
C8—C9—C10114.01 (15)C16—C15—H15120.00
C9—C10—C11108.93 (15)C15—C16—H16120.00
C9—C10—C19114.41 (16)C17—C16—H16120.00
C11—C10—C19112.23 (15)C12—C17—H17120.00
N1—C11—C10111.59 (13)C16—C17—H17120.00
N1—C11—C12110.84 (15)N1—C18—H18A109.00
C10—C11—C12110.65 (15)N1—C18—H18B109.00
C11—C12—C13121.28 (18)N1—C18—H18C109.00
C11—C12—C17120.5 (2)H18A—C18—H18B109.00
C13—C12—C17118.2 (2)H18A—C18—H18C109.00
C12—C13—C14121.2 (2)H18B—C18—H18C109.00
C13—C14—C15119.9 (2)C10—C19—H19A109.00
C14—C15—C16120.2 (3)C10—C19—H19B109.00
C15—C16—C17119.7 (2)C10—C19—H19C109.00
C12—C17—C16120.8 (2)H19A—C19—H19B109.00
O1—C20—C21113.08 (17)H19A—C19—H19C109.00
O2—C21—O3123.3 (2)H19B—C19—H19C109.00
O2—C21—C20109.43 (18)O1—C20—H20A109.00
O3—C21—C20127.2 (2)O1—C20—H20B109.00
C2—C1—H1120.00C21—C20—H20A109.00
C6—C1—H1120.00C21—C20—H20B109.00
C1—C2—H2120.00H20A—C20—H20B108.00
C3—C2—H2120.00O2—C22—H22A109.00
C2—C3—H3120.00O2—C22—H22B109.00
C4—C3—H3120.00O2—C22—H22C109.00
C3—C4—H4120.00H22A—C22—H22B109.00
C5—C4—H4120.00H22A—C22—H22C109.00
C4—C5—H5120.00H22B—C22—H22C109.00
C20—O1—N2—C9−172.81 (17)C6—C7—C8—C9178.85 (15)
N2—O1—C20—C21−71.9 (2)N1—C7—C8—C955.18 (19)
C22—O2—C21—C20−179.44 (19)C7—C8—C9—C10−55.2 (2)
C22—O2—C21—O31.7 (3)C7—C8—C9—N2122.7 (2)
C18—N1—C11—C12−57.7 (2)N2—C9—C10—C11−124.12 (18)
C7—N1—C11—C12−178.86 (15)N2—C9—C10—C192.4 (2)
C11—N1—C7—C6−179.50 (14)C8—C9—C10—C1153.95 (19)
C18—N1—C7—C658.62 (19)C8—C9—C10—C19−179.55 (16)
C11—N1—C7—C8−57.64 (18)C19—C10—C11—C1254.6 (2)
C18—N1—C11—C10178.47 (15)C9—C10—C11—C12−177.68 (15)
C18—N1—C7—C8−179.52 (15)C19—C10—C11—N1178.49 (15)
C7—N1—C11—C1057.34 (18)C9—C10—C11—N1−53.77 (18)
O1—N2—C9—C83.3 (3)C10—C11—C12—C1766.3 (2)
O1—N2—C9—C10−178.95 (15)C10—C11—C12—C13−110.6 (2)
C2—C1—C6—C7176.48 (19)N1—C11—C12—C17−58.0 (2)
C6—C1—C2—C30.8 (3)N1—C11—C12—C13125.0 (2)
C2—C1—C6—C5−0.6 (3)C11—C12—C13—C14177.3 (2)
C1—C2—C3—C4−0.1 (4)C13—C12—C17—C160.2 (3)
C2—C3—C4—C5−0.8 (4)C11—C12—C17—C16−176.8 (2)
C3—C4—C5—C61.0 (4)C17—C12—C13—C140.2 (3)
C4—C5—C6—C1−0.3 (3)C12—C13—C14—C15−0.5 (4)
C4—C5—C6—C7−177.4 (2)C13—C14—C15—C160.2 (4)
C1—C6—C7—N151.3 (2)C14—C15—C16—C170.2 (4)
C5—C6—C7—C8105.5 (2)C15—C16—C17—C12−0.4 (4)
C5—C6—C7—N1−131.70 (19)O1—C20—C21—O3−5.6 (4)
C1—C6—C7—C8−71.5 (2)O1—C20—C21—O2175.58 (18)
D—H···AD—HH···AD···AD—H···A
C8—H8A···O10.972.222.653 (2)106
C22—H22A···O30.962.282.668 (3)103
C22—H22B···Cg2i0.962.763.525 (3)138
Table 1

Hydrogen-bond geometry (Å, °)

Cg2 is the centroid of the C1–C6 ring.

D—H⋯A D—HH⋯A DA D—H⋯A
C22—H22BCg2i 0.962.763.525 (3)138.00

Symmetry code: (i) .

  6 in total

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Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

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3.  Alternative chemical modifications reverse the binding orientation of a pharmacophore scaffold in the active site of macrophage migration inhibitory factor.

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Journal:  J Biol Chem       Date:  2007-05-25       Impact factor: 5.157

4.  2,6-Bis(4-chloro-phen-yl)-1,3-dimethyl-piperidin-4-one O-benzyl-oxime.

Authors:  Dong Ho Park; V Ramkumar; P Parthiban
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-01-25

5.  2,6-Bis(4-meth-oxy-phen-yl)-1,3-dimethyl-piperidin-4-one O-benzyl-oxime.

Authors:  Dong Ho Park; V Ramkumar; P Parthiban
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-01-25

6.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  6 in total

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