Literature DB >> 24860323

(±)-4,12,15,18,26-Penta-hydroxy-13,17-dioxahepta-cyclo-[14.10.0.0(3,14).0(4,12).0(6,11).0(18,26).0(19,24)]hexa-cosa-1,3(14),6(11),7,9,15,19,21,23-nona-ene-5,25-dione methanol disolvate.

Maayan Gil1, Joseph Almog1, Faina Dubnikova1, Benny Bogoslavski1, Shmuel Cohen1.   

Abstract

The title compound, C24H14O9·2CH3OH, displays a chair-shaped form. The two di-hydro-indenone ring systems are located above and below the central fused-ring system, the dihedral angles between the mean planes of di-hydro-indenone ring systems and the mean plane of central fused-ring system are 67.91 (5) and 73.52 (4)°, respectively. In the crystal, extensive O-H⋯O hydrogen bonds, weak C-H⋯O hydrogen bonds and C-H⋯π inter-actions link the mol-ecules into a three-dimensional supra-molecular architecture.

Entities:  

Year:  2014        PMID: 24860323      PMCID: PMC4011206          DOI: 10.1107/S1600536814006643

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For an isomer of the title compound possessing a cup-shaped form, see: Mahmood et al. (2011 ▶). For a related structure, see: Almog et al. (2009 ▶).

Experimental

Crystal data

C24H14O9·2CH4O M = 510.44 Triclinic, a = 8.8243 (13) Å b = 10.3974 (16) Å c = 14.348 (2) Å α = 72.936 (3)° β = 74.639 (2)° γ = 75.792 (3)° V = 1193.3 (3) Å3 Z = 2 Mo Kα radiation μ = 0.11 mm−1 T = 295 K 0.20 × 0.13 × 0.08 mm

Data collection

Bruker SMART CCD area-detector diffractometer 13982 measured reflections 5549 independent reflections 3395 reflections with I > 2σ(I) R int = 0.050

Refinement

R[F 2 > 2σ(F 2)] = 0.067 wR(F 2) = 0.153 S = 1.01 5549 reflections 345 parameters 2 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.30 e Å−3 Δρmin = −0.33 e Å−3 Data collection: SMART (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536814006643/xu5780sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536814006643/xu5780Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S1600536814006643/xu5780Isup3.cml CCDC reference: 993652 Additional supporting information: crystallographic information; 3D view; checkCIF report Enhanced figure: interactive version of Fig. 3
C24H14O9·2CH4OZ = 2
Mr = 510.44F(000) = 532
Triclinic, P1Dx = 1.421 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 8.8243 (13) ÅCell parameters from 3395 reflections
b = 10.3974 (16) Åθ = 2.1–28.0°
c = 14.348 (2) ŵ = 0.11 mm1
α = 72.936 (3)°T = 295 K
β = 74.639 (2)°Block, colorless
γ = 75.792 (3)°0.20 × 0.13 × 0.08 mm
V = 1193.3 (3) Å3
Bruker SMART CCD area-detector diffractometer3395 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.050
Graphite monochromatorθmax = 28.0°, θmin = 2.1°
Detector resolution: 8.36 pixels mm-1h = −11→11
phi and ω scansk = −13→13
13982 measured reflectionsl = −18→18
5549 independent reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.067Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.153H atoms treated by a mixture of independent and constrained refinement
S = 1.01w = 1/[σ2(Fo2) + (0.0681P)2] where P = (Fo2 + 2Fc2)/3
5549 reflections(Δ/σ)max < 0.001
345 parametersΔρmax = 0.30 e Å3
2 restraintsΔρmin = −0.33 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.6380 (3)0.6944 (2)0.75601 (17)0.0271 (5)
C20.6617 (3)0.7483 (2)0.65384 (17)0.0251 (5)
C30.5721 (3)0.7275 (2)0.59507 (16)0.0242 (5)
C40.4448 (3)0.6583 (2)0.63721 (16)0.0253 (5)
H40.38220.64650.59850.030*
C50.4155 (2)0.6076 (2)0.74000 (16)0.0237 (5)
C60.5131 (3)0.6235 (2)0.79557 (16)0.0259 (5)
C70.7762 (3)0.8563 (2)0.49645 (17)0.0271 (5)
C80.9267 (3)0.7759 (3)0.44871 (18)0.0313 (6)
C91.0816 (3)0.7894 (3)0.4420 (2)0.0453 (7)
H91.10210.85430.46760.054*
C101.2044 (3)0.7035 (3)0.3962 (2)0.0520 (8)
H101.30960.71020.39120.062*
C111.1739 (3)0.6066 (3)0.3571 (2)0.0492 (8)
H111.25890.55110.32530.059*
C121.0206 (3)0.5921 (3)0.3650 (2)0.0420 (7)
H121.00030.52640.34010.050*
C130.8956 (3)0.6787 (2)0.41145 (18)0.0304 (6)
C140.7229 (3)0.6854 (2)0.42804 (16)0.0278 (5)
C150.6364 (3)0.7924 (2)0.48880 (16)0.0251 (5)
C160.3270 (3)0.5121 (3)0.91425 (17)0.0277 (5)
C170.1959 (3)0.6094 (3)0.96265 (17)0.0289 (6)
C180.1819 (3)0.6424 (3)1.05147 (19)0.0417 (7)
H180.25680.60031.09120.050*
C190.0530 (4)0.7400 (3)1.0794 (2)0.0501 (8)
H190.04010.76231.13960.060*
C20−0.0564 (3)0.8047 (3)1.0201 (2)0.0512 (8)
H32−0.14080.87121.04020.061*
C21−0.0430 (3)0.7726 (3)0.9319 (2)0.0425 (7)
H21−0.11710.81630.89180.051*
C220.0840 (3)0.6733 (3)0.90383 (18)0.0315 (6)
C230.1240 (3)0.6198 (3)0.81479 (17)0.0287 (6)
C240.2903 (3)0.5289 (2)0.80993 (16)0.0258 (5)
C250.7395 (5)1.0380 (4)0.2088 (3)0.0889 (13)
H25A0.74091.08800.25510.133*
H25B0.69771.09990.15340.133*
H25C0.84620.99380.18540.133*
C260.6111 (6)0.1071 (5)0.8833 (4)0.1277 (19)
H26A0.61810.12040.94530.192*
H26B0.66830.16800.82900.192*
H26C0.65680.01420.88030.192*
O10.72441 (18)0.7100 (2)0.81690 (12)0.0381 (5)
H1O0.81840.70670.78820.057*
O20.77457 (18)0.82605 (17)0.60350 (12)0.0322 (4)
O30.76792 (19)0.99359 (17)0.45672 (13)0.0354 (4)
H3O0.68071.03450.48020.053*
O40.6535 (2)0.62199 (19)0.39918 (13)0.0409 (5)
O50.51468 (19)0.88543 (17)0.44504 (12)0.0332 (4)
H5O0.54810.91080.38480.050*
O60.47605 (18)0.56300 (18)0.89531 (11)0.0317 (4)
O70.3494 (2)0.37741 (17)0.96603 (12)0.0387 (5)
H7O0.33690.37311.02550.058*
O80.0433 (2)0.6403 (2)0.75343 (13)0.0455 (5)
O90.2920 (2)0.40219 (17)0.79333 (12)0.0381 (5)
H9O0.31090.40880.73320.057*
O100.6448 (4)0.9415 (3)0.25526 (18)0.1024 (11)
H10O0.604 (5)0.909 (4)0.224 (3)0.123*
O110.4543 (4)0.1337 (3)0.8764 (2)0.0857 (8)
H11O0.420 (5)0.2163 (14)0.873 (3)0.103*
U11U22U33U12U13U23
C10.0177 (12)0.0415 (15)0.0265 (13)−0.0033 (10)−0.0055 (10)−0.0161 (11)
C20.0164 (11)0.0343 (14)0.0257 (13)−0.0045 (10)−0.0013 (9)−0.0121 (11)
C30.0193 (11)0.0301 (13)0.0236 (12)−0.0020 (10)−0.0040 (9)−0.0094 (10)
C40.0207 (12)0.0355 (14)0.0236 (12)−0.0055 (10)−0.0068 (10)−0.0109 (10)
C50.0160 (11)0.0313 (13)0.0249 (12)−0.0036 (10)−0.0035 (9)−0.0098 (10)
C60.0189 (12)0.0376 (14)0.0189 (12)−0.0010 (10)−0.0012 (9)−0.0096 (10)
C70.0257 (13)0.0330 (14)0.0245 (13)−0.0107 (10)−0.0005 (10)−0.0097 (11)
C80.0279 (13)0.0345 (14)0.0280 (13)−0.0067 (11)0.0000 (10)−0.0065 (11)
C90.0314 (15)0.0555 (19)0.0541 (18)−0.0093 (13)−0.0039 (13)−0.0244 (15)
C100.0236 (14)0.067 (2)0.063 (2)−0.0049 (14)0.0007 (14)−0.0242 (17)
C110.0341 (16)0.0509 (19)0.0534 (19)0.0045 (14)0.0028 (14)−0.0195 (15)
C120.0406 (17)0.0414 (16)0.0436 (16)−0.0045 (13)−0.0008 (13)−0.0193 (13)
C130.0289 (14)0.0326 (14)0.0276 (13)−0.0054 (11)−0.0021 (10)−0.0080 (11)
C140.0338 (14)0.0323 (14)0.0171 (12)−0.0117 (11)0.0002 (10)−0.0058 (10)
C150.0227 (12)0.0317 (13)0.0222 (12)−0.0052 (10)−0.0047 (10)−0.0085 (10)
C160.0219 (12)0.0394 (15)0.0239 (12)−0.0086 (10)−0.0047 (10)−0.0083 (11)
C170.0240 (13)0.0385 (14)0.0253 (13)−0.0118 (11)0.0016 (10)−0.0106 (11)
C180.0420 (16)0.0548 (18)0.0312 (15)−0.0054 (14)−0.0071 (12)−0.0182 (13)
C190.0463 (18)0.071 (2)0.0414 (17)−0.0076 (16)−0.0050 (14)−0.0331 (16)
C200.0318 (16)0.066 (2)0.061 (2)0.0022 (14)−0.0057 (14)−0.0372 (17)
C210.0236 (14)0.0600 (19)0.0489 (17)−0.0031 (13)−0.0084 (12)−0.0240 (15)
C220.0191 (12)0.0465 (16)0.0329 (14)−0.0104 (11)−0.0008 (10)−0.0160 (12)
C230.0168 (12)0.0465 (16)0.0245 (13)−0.0134 (11)−0.0022 (10)−0.0069 (11)
C240.0243 (12)0.0344 (14)0.0209 (12)−0.0078 (10)−0.0024 (10)−0.0100 (10)
C250.134 (4)0.069 (3)0.058 (2)−0.043 (3)0.014 (2)−0.017 (2)
C260.081 (4)0.129 (4)0.168 (5)−0.004 (3)−0.036 (4)−0.031 (4)
O10.0209 (9)0.0731 (13)0.0273 (9)−0.0157 (9)−0.0045 (7)−0.0174 (9)
O20.0262 (9)0.0483 (11)0.0274 (9)−0.0165 (8)−0.0019 (7)−0.0124 (8)
O30.0291 (10)0.0322 (10)0.0437 (11)−0.0098 (8)−0.0002 (8)−0.0107 (8)
O40.0412 (11)0.0536 (12)0.0368 (10)−0.0186 (9)0.0001 (8)−0.0237 (9)
O50.0283 (9)0.0418 (10)0.0269 (9)−0.0046 (8)−0.0067 (7)−0.0053 (8)
O60.0216 (9)0.0537 (11)0.0208 (9)−0.0113 (8)−0.0050 (7)−0.0064 (8)
O70.0511 (12)0.0408 (11)0.0235 (9)−0.0113 (9)−0.0083 (8)−0.0041 (8)
O80.0255 (10)0.0782 (15)0.0389 (11)−0.0064 (9)−0.0104 (8)−0.0225 (10)
O90.0518 (12)0.0409 (11)0.0273 (9)−0.0193 (9)−0.0059 (8)−0.0099 (8)
O100.159 (3)0.127 (2)0.0380 (14)−0.096 (2)−0.0015 (16)−0.0037 (15)
O110.083 (2)0.0627 (17)0.119 (2)0.0077 (15)−0.0398 (17)−0.0354 (17)
C1—O11.367 (3)C16—C171.502 (3)
C1—C61.379 (3)C16—C241.566 (3)
C1—C21.386 (3)C17—C181.382 (3)
C2—O21.356 (3)C17—C221.386 (3)
C2—C31.388 (3)C18—C191.384 (4)
C3—C41.388 (3)C18—H180.9300
C3—C151.492 (3)C19—C201.375 (4)
C4—C51.389 (3)C19—H190.9300
C4—H40.9300C20—C211.371 (4)
C5—C61.384 (3)C20—H320.9300
C5—C241.507 (3)C21—C221.385 (3)
C6—O61.369 (3)C21—H210.9300
C7—O31.364 (3)C22—C231.466 (3)
C7—O21.472 (3)C23—O81.215 (3)
C7—C81.497 (3)C23—C241.534 (3)
C7—C151.579 (3)C24—O91.402 (3)
C8—C131.383 (3)C25—O101.369 (4)
C8—C91.384 (3)C25—H25A0.9600
C9—C101.377 (4)C25—H25B0.9600
C9—H90.9300C25—H25C0.9600
C10—C111.395 (4)C26—O111.367 (5)
C10—H100.9300C26—H26A0.9600
C11—C121.369 (4)C26—H26B0.9600
C11—H110.9300C26—H26C0.9600
C12—C131.395 (3)O1—H1O0.8200
C12—H120.9300O3—H3O0.8200
C13—C141.467 (3)O5—H5O0.8200
C14—O41.214 (3)O7—H7O0.8194
C14—C151.543 (3)O9—H9O0.8194
C15—O51.405 (3)O10—H10O0.820 (10)
C16—O71.373 (3)O11—H11O0.828 (10)
C16—O61.467 (3)
O1—C1—C6120.2 (2)C17—C16—C24105.47 (18)
O1—C1—C2125.2 (2)C18—C17—C22120.5 (2)
C6—C1—C2114.6 (2)C18—C17—C16128.1 (2)
O2—C2—C1122.4 (2)C22—C17—C16111.3 (2)
O2—C2—C3114.8 (2)C17—C18—C19118.0 (3)
C1—C2—C3122.9 (2)C17—C18—H18121.0
C4—C3—C2121.2 (2)C19—C18—H18121.0
C4—C3—C15130.4 (2)C20—C19—C18121.4 (3)
C2—C3—C15108.38 (19)C20—C19—H19119.3
C3—C4—C5116.7 (2)C18—C19—H19119.3
C3—C4—H4121.6C21—C20—C19120.9 (3)
C5—C4—H4121.6C21—C20—H32119.5
C6—C5—C4120.4 (2)C19—C20—H32119.5
C6—C5—C24108.21 (19)C20—C21—C22118.3 (3)
C4—C5—C24131.3 (2)C20—C21—H21120.9
O6—C6—C1121.4 (2)C22—C21—H21120.9
O6—C6—C5114.6 (2)C21—C22—C17121.0 (2)
C1—C6—C5124.0 (2)C21—C22—C23129.0 (2)
O3—C7—O2109.01 (18)C17—C22—C23110.0 (2)
O3—C7—C8111.65 (19)O8—C23—C22127.9 (2)
O2—C7—C8107.93 (19)O8—C23—C24123.6 (2)
O3—C7—C15116.6 (2)C22—C23—C24108.51 (19)
O2—C7—C15105.89 (17)O9—C24—C5115.82 (18)
C8—C7—C15105.35 (19)O9—C24—C23112.00 (18)
C13—C8—C9121.3 (2)C5—C24—C23110.43 (19)
C13—C8—C7111.8 (2)O9—C24—C16111.61 (19)
C9—C8—C7126.9 (2)C5—C24—C16102.36 (17)
C10—C9—C8117.9 (3)C23—C24—C16103.53 (17)
C10—C9—H9121.1O10—C25—H25A109.5
C8—C9—H9121.1O10—C25—H25B109.5
C9—C10—C11121.2 (3)H25A—C25—H25B109.5
C9—C10—H10119.4O10—C25—H25C109.5
C11—C10—H10119.4H25A—C25—H25C109.5
C12—C11—C10120.9 (3)H25B—C25—H25C109.5
C12—C11—H11119.6O11—C26—H26A109.5
C10—C11—H11119.6O11—C26—H26B109.5
C11—C12—C13118.2 (3)H26A—C26—H26B109.5
C11—C12—H12120.9O11—C26—H26C109.5
C13—C12—H12120.9H26A—C26—H26C109.5
C8—C13—C12120.6 (2)H26B—C26—H26C109.5
C8—C13—C14110.5 (2)C1—O1—H1O109.5
C12—C13—C14128.9 (2)C2—O2—C7108.05 (16)
O4—C14—C13128.1 (2)C7—O3—H3O109.5
O4—C14—C15123.4 (2)C15—O5—H5O109.5
C13—C14—C15108.41 (19)C6—O6—C16107.45 (16)
O5—C15—C3110.68 (19)C16—O7—H11O116.6 (9)
O5—C15—C14111.54 (18)C16—O7—H7O109.4
C3—C15—C14112.18 (19)H11O—O7—H7O134.0
O5—C15—C7115.65 (19)C24—O9—H11O120.8 (10)
C3—C15—C7102.74 (18)C24—O9—H9O109.2
C14—C15—C7103.64 (18)H11O—O9—H9O112.8
O7—C16—O6108.50 (18)C25—O10—H5O124.0
O7—C16—C17117.07 (19)C25—O10—H10O123 (3)
O6—C16—C17107.07 (19)H5O—O10—H10O111.0
O7—C16—C24111.54 (19)C26—O11—H11O108 (3)
O6—C16—C24106.64 (17)
D—H···AD—HH···AD···AD—H···A
O1—H1O···O8i0.821.922.702 (2)160
O3—H3O···O5ii0.821.912.725 (2)171
O5—H5O···O100.821.802.610 (3)171
O7—H7O···O1iii0.822.142.916 (2)158
O9—H9O···O4iv0.821.952.751 (2)166
O10—H10O···O11iv0.82 (1)1.85 (2)2.650 (4)163 (5)
O11—H11O···O70.83 (1)2.31 (3)3.010 (3)142 (4)
O11—H11O···O90.83 (1)2.15 (3)2.873 (3)145 (4)
C18—H18···O6iii0.932.563.370 (3)146
C21—H21···O1v0.932.573.231 (3)129
C11—H11···Cgvi0.932.633.501 (3)156
Table 1

Hydrogen-bond geometry (Å, °)

Cg is the centroid of the C1–C6 benzene ring.

D—H⋯A D—HH⋯A DA D—H⋯A
O1—H1O⋯O8i 0.821.922.702 (2)160
O3—H3O⋯O5ii 0.821.912.725 (2)171
O5—H5O⋯O100.821.802.610 (3)171
O7—H7O⋯O1iii 0.822.142.916 (2)158
O9—H9O⋯O4iv 0.821.952.751 (2)166
O10—H10O⋯O11iv 0.82 (1)1.85 (2)2.650 (4)163 (5)
O11—H11O⋯O70.83 (1)2.31 (3)3.010 (3)142 (4)
O11—H11O⋯O90.83 (1)2.15 (3)2.873 (3)145 (4)
C18—H18⋯O6iii 0.932.563.370 (3)146
C21—H21⋯O1v 0.932.573.231 (3)129
C11—H11⋯Cg vi 0.932.633.501 (3)156

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  (±)-4,12,15,18,26-Penta-hydroxy-13,17-dioxahepta-cyclo-[14.10.0.0.0.0.0.0]hexa-cosa-1,3(14),6(11),7,9,15,19,21,23-nona-ene-5,25-dione monohydrate.

Authors:  Khalid Mahmood; Muhammad Yaqub; M Nawaz Tahir; Zahid Shafiq; Ashfaq Mahmood Qureshi
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-03-19
  2 in total
  1 in total

1.  Crystal structure of (acetato-κO)(ethanol-κO)[(9S,17S,21S,29S)-9,17,21,29-tetra-hydroxy-18,30-dioxa-octa-cyclo-[18.10.0.0(2,7).0(8,19).0(9,17).0(11,16).0(21,29).0(23,28)]triaconta-1,3,5,7,11(16),12,14,19,23(28),24,26-undeca-ene-10,22-dione-κ(3) O (18),O (21),O (22)]caesium ethanol monosolvate.

Authors:  Ravell Bengiat; Maayan Gil; Asne Klein; Benny Bogoslavsky; Shmuel Cohen; Guy Yardeni; Israel Zilbermann; Joseph Almog
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2016-06-03
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