Literature DB >> 24860317

catena-Poly[[aqua-zinc(II)]-μ-N,N'-bis-(2-cyano-3-eth-oxy-3-oxoprop-1-en-yl)benzene-1,2-diaminido].

Monica Fuchs1, Thomas Zevaco1, Eckhard Dinjus1, Olaf Walter1.   

Abstract

The slightly yellow-coloured title complex, [Zn(C18H16N4O4)(H2O)] n , crystallizes with one mol-ecule in the asymmetric unit. The structure clearly shows the mer-η(4) O,O,N,N-binding mode of the N,N'-bis-(2-cyano-ethyl-propeno-yl)-1,2-di-amido-benzene ligand stabilizing the Zn centre of a distorted octa-hedral environment. The fifth coordination site in one apical position is held by a coordinating solvent water mol-ecule whereas the complete octa-hedral coordination sphere is completed by coordination of one N atom from a CN group of a neighbouring mol-ecule, leading to the final polymeric structure consisting of zigzag staggered chains in parallel orientation along the c-axis direction. Between the coord-in-ated water solvent molecule and the N atoms of uncoord-in-ated cyano-groups of neighboured units, two H-bridge bonds are formed. One of these H-bridge bonds is of inter- whereas the other of intra-strand nature, leading to a two-dimensional network parallel to (110) stabilizing the supramolecular structure. Six Zn-O or Zn-N bonds are found with lengths ranging from 2.061 (1) to 2.185 (1) Å and bond angles about the Zn atom are clustered in the ranges 79.83 (4)-104.21 (4) and 167.05 (4)-170.28 (4)°.

Entities:  

Year:  2014        PMID: 24860317      PMCID: PMC4011238          DOI: 10.1107/S1600536814008381

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

The structures of ZnII complexes with ligands stabilizing comparable complex geometries can be found in Barnard et al. (2009 ▶), Ryu et al. (2003 ▶) or Tanase et al. (2001 ▶). In Tanase et al. (2001 ▶), the ligands show comparable N,N,O,O-coordination with respect to a different ligand backbone whereas in Ryu et al. (2003 ▶) and Barnard et al. (2009 ▶), the ligands with N,N,N,N-coordination are di­amino­benzene derivatives. In Fuchs et al. (2014 ▶), a mononuclear Zn complex is presented with the same ligand but a dmso mol­ecule in the coordination sphere of the metal stabilizing a different complex geometry. For the synthesis, see: Jäger et al. (1985 ▶).

Experimental

Crystal data

[Zn(C18H16N4O4)(H2O)] M = 435.73 Orthorhombic, a = 13.9312 (11) Å b = 9.2315 (7) Å c = 27.423 (2) Å V = 3526.7 (5) Å3 Z = 8 Mo Kα radiation μ = 1.43 mm−1 T = 100 K 0.10 × 0.09 × 0.07 mm

Data collection

Bruker APEXII Quazar diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2007 ▶) T min = 0.928, T max = 0.953 60234 measured reflections 4294 independent reflections 3812 reflections with I > 2σ(I) R int = 0.025

Refinement

R[F 2 > 2σ(F 2)] = 0.023 wR(F 2) = 0.063 S = 1.04 4294 reflections 268 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.42 e Å−3 Δρmin = −0.43 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL2013 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) I. DOI: 10.1107/S1600536814008381/nk2220sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536814008381/nk2220Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S1600536814008381/nk2220Isup3.cdx CCDC reference: 992382 Additional supporting information: crystallographic information; 3D view; checkCIF report
[Zn(C18H16N4O4)(H2O)]Dx = 1.641 Mg m3
Mr = 435.73Mo Kα radiation, λ = 0.71073 Å
Orthorhombic, PbcaCell parameters from 9786 reflections
a = 13.9312 (11) Åθ = 5.5–56.7°
b = 9.2315 (7) ŵ = 1.43 mm1
c = 27.423 (2) ÅT = 100 K
V = 3526.7 (5) Å3Quader, light yellow
Z = 80.10 × 0.09 × 0.07 mm
F(000) = 1792
Bruker APEXII Quazar diffractometer4294 independent reflections
Radiation source: microfocus sealed Iµs tube3812 reflections with I > 2σ(I)
Detector resolution: 66 pixels mm-1Rint = 0.025
combined φ– and ω–scansθmax = 28.6°, θmin = 1.5°
Absorption correction: multi-scan (SADABS; Bruker, 2007)h = −18→18
Tmin = 0.928, Tmax = 0.953k = −11→12
60234 measured reflectionsl = −36→36
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.023Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.063H atoms treated by a mixture of independent and constrained refinement
S = 1.04w = 1/[σ2(Fo2) + (0.0305P)2 + 2.5256P] where P = (Fo2 + 2Fc2)/3
4294 reflections(Δ/σ)max = 0.001
268 parametersΔρmax = 0.42 e Å3
0 restraintsΔρmin = −0.43 e Å3
Experimental. Spectroscopic data: 1H NMR (400 MHz, dmso-d6): δ = 7.56, dd, 3JHH= 6.1 Hz, 4JHH= 3.1 Hz, 2H, H(arom); 7.05, dd, 3JHH= 6.1 Hz, 4JHH= 3.1 Hz, 2H, H(arom); 4.25, q, 3JHH= 7.1 Hz, 4H, OCH2; 1.29, t, 3JHH= 7.1 Hz, 3H, CH3. 13C NMR (100 MHz, dmso-d6): δ = 177.77; 156.27; 138.01; 124.39; 121.19; 114.89; 68.05; 60.24; 14.13. ESI-MS (m/z, %): 417 (100) [M]+, 418 (23) [M+H]+, 835 (15) [2M+H]+. IR (KBr, cm-1): 2203; 1625; 1023; 748. UV/VIS (CH2Cl2): λmax (ε) (nm, mol-1dm3cm-1): 241 (16522),
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
xyzUiso*/Ueq
Zn10.50231 (2)0.19828 (2)0.37062 (2)0.00984 (6)
O10.36966 (7)−0.12202 (11)0.28089 (3)0.0161 (2)
O20.41756 (7)0.03163 (10)0.34019 (3)0.01339 (19)
O30.34564 (7)0.50414 (11)0.45261 (4)0.0178 (2)
O40.40466 (7)0.31264 (10)0.41189 (3)0.01378 (19)
O50.51731 (9)0.06806 (12)0.43673 (4)0.0195 (2)
H510.5088 (13)−0.014 (3)0.4428 (7)0.026 (5)*
H520.5083 (14)0.119 (3)0.4611 (9)0.035 (6)*
N10.61097 (8)0.33622 (12)0.39350 (4)0.0107 (2)
N20.61290 (8)0.12889 (12)0.32640 (4)0.0105 (2)
N30.53603 (9)−0.15532 (13)0.19114 (4)0.0150 (2)
N40.50550 (9)0.76393 (14)0.47291 (4)0.0168 (2)
C10.70235 (10)0.29789 (13)0.37492 (4)0.0104 (2)
C20.79016 (10)0.35644 (14)0.38978 (5)0.0127 (2)
H20.79150.42710.41500.017 (2)*
C30.87537 (10)0.31270 (14)0.36822 (5)0.0131 (3)
H30.93420.35610.37790.017 (2)*
C40.87557 (10)0.20536 (14)0.33235 (5)0.0133 (3)
H40.93420.17600.31770.017 (2)*
C50.78987 (10)0.14213 (14)0.31837 (5)0.0129 (3)
H50.79000.06640.29490.017 (2)*
C60.70280 (10)0.18889 (14)0.33858 (4)0.0106 (2)
C70.60147 (10)0.06126 (13)0.28535 (4)0.0109 (2)
H70.65400.06110.26330.011 (3)*
C80.51716 (10)−0.01222 (15)0.27076 (5)0.0117 (2)
C90.43345 (10)−0.02889 (14)0.30044 (4)0.0116 (2)
C100.52453 (9)−0.09216 (15)0.22679 (5)0.0117 (2)
C110.29041 (10)−0.17030 (16)0.31142 (5)0.0173 (3)
H11A0.2381−0.20800.29060.027 (2)*
H11B0.2650−0.08720.33030.027 (2)*
C120.32314 (12)−0.28751 (16)0.34613 (6)0.0219 (3)
H12A0.3535−0.36600.32760.027 (2)*
H12B0.2677−0.32560.36400.027 (2)*
H12C0.3695−0.24700.36930.027 (2)*
C130.59711 (10)0.46053 (14)0.41516 (4)0.0111 (2)
H130.65100.52260.41880.011 (3)*
C140.50756 (10)0.51032 (15)0.43377 (5)0.0121 (3)
C160.50610 (9)0.64963 (16)0.45565 (5)0.0132 (3)
C150.41851 (10)0.43285 (14)0.43127 (4)0.0126 (3)
C170.25169 (11)0.43452 (17)0.45179 (5)0.0218 (3)
H17A0.24350.38210.42060.037 (2)*
H17B0.20100.50930.45390.037 (2)*
C180.24101 (12)0.32972 (19)0.49360 (5)0.0272 (4)
H18A0.29450.26090.49320.037 (2)*
H18B0.18030.27700.49030.037 (2)*
H18C0.24120.38320.52450.037 (2)*
U11U22U33U12U13U23
Zn10.01164 (9)0.00914 (9)0.00874 (8)−0.00053 (5)0.00045 (5)−0.00140 (5)
O10.0152 (5)0.0196 (5)0.0134 (4)−0.0059 (4)0.0007 (3)−0.0042 (4)
O20.0143 (5)0.0136 (5)0.0122 (4)−0.0016 (4)0.0011 (3)−0.0024 (3)
O30.0141 (5)0.0166 (5)0.0226 (5)0.0008 (4)0.0038 (4)−0.0058 (4)
O40.0156 (5)0.0132 (5)0.0126 (4)−0.0006 (4)0.0013 (4)−0.0028 (3)
O50.0387 (7)0.0089 (5)0.0110 (5)0.0003 (4)0.0024 (4)−0.0005 (4)
N10.0131 (5)0.0096 (5)0.0095 (5)0.0002 (4)0.0000 (4)−0.0002 (4)
N20.0121 (5)0.0092 (5)0.0102 (5)−0.0003 (4)−0.0010 (4)−0.0007 (4)
N30.0143 (6)0.0172 (6)0.0136 (5)−0.0040 (5)−0.0001 (4)−0.0026 (4)
N40.0218 (7)0.0124 (6)0.0161 (6)0.0003 (5)0.0043 (4)−0.0015 (5)
C10.0134 (6)0.0088 (6)0.0092 (5)0.0013 (5)−0.0007 (4)0.0015 (4)
C20.0163 (7)0.0097 (6)0.0120 (6)−0.0008 (5)−0.0023 (5)−0.0005 (4)
C30.0138 (6)0.0111 (6)0.0142 (6)−0.0024 (5)−0.0030 (5)0.0020 (5)
C40.0122 (6)0.0136 (6)0.0140 (6)0.0007 (5)0.0015 (5)0.0016 (5)
C50.0153 (6)0.0116 (6)0.0120 (6)0.0004 (5)−0.0004 (5)−0.0018 (5)
C60.0137 (6)0.0086 (6)0.0097 (5)−0.0005 (5)−0.0010 (4)0.0013 (4)
C70.0130 (6)0.0095 (6)0.0101 (5)0.0006 (5)0.0006 (4)0.0004 (4)
C80.0140 (6)0.0113 (6)0.0098 (6)−0.0011 (5)−0.0008 (5)−0.0012 (5)
C90.0137 (6)0.0095 (6)0.0116 (5)−0.0001 (5)−0.0022 (5)0.0006 (4)
C100.0106 (6)0.0118 (6)0.0126 (6)−0.0026 (5)−0.0014 (5)0.0021 (5)
C110.0121 (6)0.0193 (7)0.0205 (6)−0.0047 (5)0.0026 (5)−0.0045 (5)
C120.0253 (8)0.0162 (7)0.0243 (7)−0.0028 (6)0.0065 (6)−0.0015 (5)
C130.0147 (6)0.0103 (6)0.0085 (5)−0.0008 (5)−0.0014 (5)0.0003 (4)
C140.0165 (7)0.0095 (6)0.0105 (6)0.0014 (5)0.0005 (4)−0.0012 (5)
C160.0156 (7)0.0137 (7)0.0103 (6)0.0005 (5)0.0021 (4)0.0016 (5)
C150.0151 (7)0.0131 (6)0.0096 (5)0.0024 (5)0.0008 (5)0.0009 (5)
C170.0116 (7)0.0269 (8)0.0268 (7)0.0002 (6)0.0006 (5)−0.0103 (6)
C180.0210 (8)0.0365 (9)0.0242 (7)−0.0136 (7)0.0030 (6)−0.0085 (7)
Zn1—O42.0606 (9)C3—H30.9500
Zn1—N22.0626 (11)C4—C51.3831 (19)
Zn1—N12.0754 (11)C4—H40.9500
Zn1—O22.1112 (9)C5—C61.4016 (18)
Zn1—O52.1852 (11)C5—H50.9500
Zn1—N3i2.2317 (11)C7—C81.4141 (18)
O1—C91.3476 (16)C7—H70.9500
O1—C111.4555 (16)C8—C101.4175 (18)
O2—C91.2447 (15)C8—C91.4304 (18)
O3—C151.3440 (16)C11—C121.511 (2)
O3—C171.4582 (18)C11—H11A0.9900
O4—C151.2455 (16)C11—H11B0.9900
O5—H510.79 (2)C12—H12A0.9800
O5—H520.83 (2)C12—H12B0.9800
N1—C131.3064 (16)C12—H12C0.9800
N1—C11.4161 (17)C13—C141.4242 (18)
N2—C71.2970 (16)C13—H130.9500
N2—C61.4097 (17)C14—C161.4192 (19)
N3—C101.1493 (17)C14—C151.4336 (19)
N3—Zn1ii2.2317 (11)C17—C181.508 (2)
N4—C161.157 (2)C17—H17A0.9900
C1—C21.3982 (18)C17—H17B0.9900
C1—C61.4163 (17)C18—H18A0.9800
C2—C31.3862 (19)C18—H18B0.9800
C2—H20.9500C18—H18C0.9800
C3—C41.3962 (18)
O4—Zn1—N2167.20 (4)N2—C6—C1116.22 (12)
O4—Zn1—N190.06 (4)N2—C7—C8125.34 (12)
N2—Zn1—N179.83 (4)N2—C7—H7117.3
O4—Zn1—O2102.78 (4)C8—C7—H7117.3
N2—Zn1—O287.65 (4)C7—C8—C10115.48 (12)
N1—Zn1—O2167.05 (4)C7—C8—C9124.60 (12)
O4—Zn1—O583.64 (4)C10—C8—C9119.15 (12)
N2—Zn1—O5104.21 (4)O2—C9—O1121.16 (12)
N1—Zn1—O590.97 (4)O2—C9—C8126.50 (12)
O2—Zn1—O588.89 (4)O1—C9—C8112.33 (11)
O4—Zn1—N3i87.06 (4)N3—C10—C8176.10 (14)
N2—Zn1—N3i85.45 (4)O1—C11—C12110.65 (12)
N1—Zn1—N3i91.86 (4)O1—C11—H11A109.5
O2—Zn1—N3i90.43 (4)C12—C11—H11A109.5
O5—Zn1—N3i170.28 (4)O1—C11—H11B109.5
C9—O1—C11117.81 (10)C12—C11—H11B109.5
C9—O2—Zn1125.02 (9)H11A—C11—H11B108.1
C15—O3—C17117.09 (11)C11—C12—H12A109.5
C15—O4—Zn1126.05 (9)C11—C12—H12B109.5
Zn1—O5—H51133.8 (15)H12A—C12—H12B109.5
Zn1—O5—H52110.0 (16)C11—C12—H12C109.5
H51—O5—H52111 (2)H12A—C12—H12C109.5
C13—N1—C1121.06 (11)H12B—C12—H12C109.5
C13—N1—Zn1124.65 (9)N1—C13—C14125.16 (12)
C1—N1—Zn1113.18 (8)N1—C13—H13117.4
C7—N2—C6120.25 (11)C14—C13—H13117.4
C7—N2—Zn1124.61 (9)C16—C14—C13117.16 (12)
C6—N2—Zn1113.73 (8)C16—C14—C15117.38 (12)
C10—N3—Zn1ii156.83 (11)C13—C14—C15125.44 (12)
C2—C1—N1125.81 (11)N4—C16—C14179.05 (15)
C2—C1—C6118.41 (12)O4—C15—O3120.33 (12)
N1—C1—C6115.77 (12)O4—C15—C14126.80 (12)
C3—C2—C1120.83 (12)O3—C15—C14112.87 (11)
C3—C2—H2119.6O3—C17—C18111.08 (12)
C1—C2—H2119.6O3—C17—H17A109.4
C2—C3—C4120.58 (13)C18—C17—H17A109.4
C2—C3—H3119.7O3—C17—H17B109.4
C4—C3—H3119.7C18—C17—H17B109.4
C5—C4—C3119.55 (13)H17A—C17—H17B108.0
C5—C4—H4120.2C17—C18—H18A109.5
C3—C4—H4120.2C17—C18—H18B109.5
C4—C5—C6120.49 (12)H18A—C18—H18B109.5
C4—C5—H5119.8C17—C18—H18C109.5
C6—C5—H5119.8H18A—C18—H18C109.5
C5—C6—N2123.66 (11)H18B—C18—H18C109.5
C5—C6—C1120.06 (12)
D—H···AD—HH···AD···AD—H···A
O5—H51···N4iii0.79 (2)2.21 (2)2.9823 (17)168 (2)
O5—H52···N4iv0.83 (2)2.12 (2)2.9405 (16)174 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O5—H51⋯N4i 0.79 (2)2.21 (2)2.9823 (17)168 (2)
O5—H52⋯N4ii 0.83 (2)2.12 (2)2.9405 (16)174 (2)

Symmetry codes: (i) ; (ii) .

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