Literature DB >> 24860310

1,4-Diazo-niabi-cyclo-[2.2.2]octane tetra-chlorido-cadmate(II) monohydrate.

Tarek Ben Rhaiem1, Habib Boughzala1.   

Abstract

The asymmetric unit of the title compound (C6H14N2)[CdCl4]·H2O contained one 1,4-di-aza-bicyclo-[2.2.2]octane dication, a tetrahedral CdCl4 (2-) anion and a lattice water mol-ecule. In the crystal, the solvate water mol-ecule inter-acts with the cationic and anionic species via N-H⋯O and O-H⋯Cl [O⋯Cl = 3.289 (7) Å] hydrogen-bond inter-actions, respectively, leading to a layered supramolecular structure extending parallel to (011).

Entities:  

Year:  2014        PMID: 24860310      PMCID: PMC4011291          DOI: 10.1107/S1600536814007533

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to this class of compounds, see: Wei & Willett (2002 ▶); Billing & Lemmerer (2009 ▶); Samet et al. (2010 ▶) Lemmerer & Billing (2012 ▶); Ben Rhaiem et al. (2013 ▶). For related structures, see: Sun & Qu (2005 ▶); Zhang & Zhu (2012 ▶).

Experimental

Crystal data

(C6H14N2)[CdCl4]·H2O M = 386.40 Orthorhombic, a = 8.528 (5) Å b = 11.653 (2) Å c = 13.114 (6) Å V = 1303.2 (10) Å3 Z = 4 Mo Kα radiation μ = 2.47 mm−1 T = 298 K 0.54 × 0.43 × 0.29 mm

Data collection

Enraf–Nonius CAD-4 diffractometer Absorption correction: ψ scan (North et al., 1968 ▶) T min = 0.283, T max = 0.536 5639 measured reflections 2837 independent reflections 2632 reflections with I > 2σ(I) R int = 0.075 2 standard reflections every 120 min intensity decay: 1%

Refinement

R[F 2 > 2σ(F 2)] = 0.048 wR(F 2) = 0.134 S = 1.19 2837 reflections 135 parameters 10 restraints H-atom parameters not refined Δρmax = 1.58 e Å−3 Δρmin = −1.44 e Å−3 Data collection: CAD-4 EXPRESS (Duisenberg, 1992 ▶); cell refinement: CAD-4 EXPRESS; data reduction: XCAD4 (Harms & Wocadlo, 1995 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97; molecular graphics: DIAMOND (Brandenburg, 2006 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) I, New_Global_Publ_Block. DOI: 10.1107/S1600536814007533/ds2238sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536814007533/ds2238Isup2.hkl CCDC reference: 967916 Additional supporting information: crystallographic information; 3D view; checkCIF report
(C6H14N2)[CdCl4]·H2OF(000) = 752
Mr = 386.40Dx = 1.959 Mg m3
Orthorhombic, P212121Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2abCell parameters from 2837 reflections
a = 8.528 (5) Åθ = 2.4–27°
b = 11.653 (2) ŵ = 2.47 mm1
c = 13.114 (6) ÅT = 298 K
V = 1303.2 (10) Å3Prism, colorless
Z = 40.54 × 0.43 × 0.29 mm
Enraf–Nonius CAD-4 diffractometer2632 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.075
Graphite monochromatorθmax = 27.0°, θmin = 2.3°
non–profiled ω/2θ scansh = −10→6
Absorption correction: ψ scan (North et al. (1968)k = −14→1
Tmin = 0.283, Tmax = 0.536l = −16→16
5639 measured reflections2 standard reflections every 120 min
2837 independent reflections intensity decay: 1%
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.048Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.134H-atom parameters not refined
S = 1.19w = 1/[σ2(Fo2) + (0.0587P)2 + 1.6133P] where P = (Fo2 + 2Fc2)/3
2837 reflections(Δ/σ)max = 0.001
135 parametersΔρmax = 1.58 e Å3
10 restraintsΔρmin = −1.44 e Å3
Experimental. Number of psi-scan sets used was 5 Theta correction was applied. Averaged transmission function was used. No Fourier smoothing was applied.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cd0.74636 (5)0.52500 (4)0.50315 (3)0.04606 (17)
Cl10.52000 (18)0.40196 (13)0.46103 (13)0.0465 (3)
Cl20.7583 (2)0.53068 (14)0.69230 (11)0.0544 (4)
Cl30.9940 (2)0.43346 (15)0.46078 (15)0.0557 (4)
Cl40.6884 (2)0.71103 (15)0.41831 (12)0.0542 (4)
C10.4091 (7)0.6836 (5)0.2060 (5)0.0457 (13)
H1A0.498 (5)0.6620 (12)0.153 (3)0.055*
H1B0.4419 (18)0.761 (4)0.2435 (19)0.055*
C20.2540 (8)0.6998 (6)0.1512 (5)0.0514 (13)
H2A0.2282 (17)0.776 (5)0.1496 (5)0.062*
H2B0.2617 (9)0.6741 (16)0.086 (4)0.062*
C30.2824 (8)0.6248 (7)0.3636 (6)0.0583 (18)
H3A0.3266 (11)0.6796 (11)0.4005 (8)0.070*
H3B0.2613 (9)0.5660 (12)0.4042 (9)0.070*
C40.1319 (9)0.6690 (6)0.3149 (6)0.065 (2)
H4A0.0481 (16)0.6394 (8)0.3470 (8)0.078*
H4B0.1274 (9)0.7458 (14)0.3198 (7)0.078*
C50.3284 (9)0.4857 (5)0.2294 (6)0.0519 (16)
H5A0.3330 (9)0.4244 (11)0.2713 (9)0.062*
H5B0.3874 (13)0.4708 (6)0.1738 (11)0.062*
C60.1623 (9)0.5077 (6)0.1985 (7)0.0586 (18)
H6A0.0970 (14)0.4692 (9)0.2392 (9)0.070*
H6B0.1468 (9)0.4843 (7)0.1344 (12)0.070*
N10.3888 (6)0.5887 (5)0.2823 (4)0.0431 (11)
H10.477 (2)0.5730 (6)0.3082 (7)0.052*
N20.1318 (6)0.6341 (5)0.2067 (5)0.0554 (15)
H20.043 (2)0.6488 (6)0.1811 (8)0.067*
O0.1563 (8)0.2409 (6)0.3238 (6)0.0861 (19)
U11U22U33U12U13U23
Cd0.0463 (3)0.0409 (2)0.0510 (3)0.00213 (18)−0.0028 (2)0.00245 (17)
Cl10.0486 (8)0.0402 (7)0.0508 (8)−0.0018 (6)0.0024 (6)−0.0039 (6)
Cl20.0613 (8)0.0530 (8)0.0490 (7)0.0058 (9)−0.0041 (8)−0.0042 (6)
Cl30.0519 (8)0.0515 (8)0.0635 (9)0.0105 (7)0.0063 (7)0.0105 (8)
Cl40.0684 (9)0.0423 (7)0.0520 (8)0.0014 (7)−0.0163 (7)0.0047 (7)
C10.042 (3)0.034 (3)0.061 (3)−0.005 (2)0.004 (3)0.007 (3)
C20.049 (3)0.048 (3)0.057 (3)−0.006 (3)−0.001 (3)0.020 (3)
C30.063 (5)0.057 (4)0.056 (3)−0.006 (3)0.006 (3)−0.005 (3)
C40.062 (4)0.046 (4)0.087 (5)0.012 (3)0.032 (4)0.012 (4)
C50.055 (4)0.026 (2)0.075 (4)0.001 (3)−0.008 (3)0.002 (3)
C60.061 (4)0.041 (3)0.075 (5)−0.008 (3)−0.016 (4)0.006 (3)
N10.042 (2)0.040 (2)0.047 (3)0.002 (2)−0.005 (2)0.004 (2)
N20.038 (3)0.044 (3)0.084 (4)0.004 (2)−0.004 (3)0.027 (3)
O0.085 (4)0.070 (4)0.103 (5)−0.014 (3)0.008 (4)−0.009 (4)
Cd—Cl32.430 (2)C3—H3B0.8860
Cd—Cl12.4673 (18)C4—N21.476 (11)
Cd—Cl22.4835 (19)C4—H4A0.8977
Cd—Cl42.4864 (17)C4—H4B0.8977
C1—N11.502 (8)C5—N11.479 (9)
C1—C21.517 (9)C5—C61.496 (10)
C1—H1A1.0614C5—H5A0.9026
C1—H1B1.0614C5—H5B0.9026
C2—N21.485 (8)C6—N21.499 (9)
C2—H2A0.9127C6—H6A0.8931
C2—H2B0.9127C6—H6B0.8931
C3—N11.461 (9)N1—H10.8477
C3—C41.524 (10)N2—H20.8420
C3—H3A0.8860
Cl3—Cd—Cl1111.93 (7)N2—C4—H4B110.1
Cl3—Cd—Cl2101.80 (6)C3—C4—H4B110.1
Cl1—Cd—Cl2105.73 (6)H4A—C4—H4B108.4
Cl3—Cd—Cl4116.95 (6)N1—C5—C6108.5 (5)
Cl1—Cd—Cl4104.53 (6)N1—C5—H5A110.0
Cl2—Cd—Cl4115.58 (6)C6—C5—H5A110.0
N1—C1—C2107.9 (5)N1—C5—H5B110.0
N1—C1—H1A110.1C6—C5—H5B110.0
C2—C1—H1A110.1H5A—C5—H5B108.4
N1—C1—H1B110.1C5—C6—N2108.3 (5)
C2—C1—H1B110.1C5—C6—H6A110.0
H1A—C1—H1B108.4N2—C6—H6A110.0
N2—C2—C1108.4 (5)C5—C6—H6B110.0
N2—C2—H2A110.0N2—C6—H6B110.0
C1—C2—H2A110.0H6A—C6—H6B108.4
N2—C2—H2B110.0C3—N1—C5111.1 (6)
C1—C2—H2B110.0C3—N1—C1110.2 (5)
H2A—C2—H2B108.4C5—N1—C1109.0 (5)
N1—C3—C4108.4 (6)C3—N1—H1108.8
N1—C3—H3A110.0C5—N1—H1108.8
C4—C3—H3A110.0C1—N1—H1108.8
N1—C3—H3B110.0C4—N2—C2109.2 (6)
C4—C3—H3B110.0C4—N2—C6109.9 (6)
H3A—C3—H3B108.4C2—N2—C6110.5 (6)
N2—C4—C3108.0 (5)C4—N2—H2109.1
N2—C4—H4A110.1C2—N2—H2109.1
C3—C4—H4A110.1C6—N2—H2109.1
D—H···AD—HH···AD···AD—H···A
N2—H2···Oi0.842.012.783 (1)151
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N2—H2⋯Oi 0.842.012.783 (1)151

Symmetry code: (i) .

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