Literature DB >> 24855465

An acetonitrile solvatomorph of di-chlorido-(1,10-phenanthroline-5,6-dione)platinum(II).

Amanda Hamala1, Carissa Fritz1, Gulnar Rawji1, Vincent Lynch2.   

Abstract

In the title complex, [PtCl2(C12H6N2O2)]·CH3CN, the Pt(II) atom lies in a slightly distorted square-planar arrangement defined by an N2Cl2 donor set. In the packed structure, columns of complex moieties are stacked such that the neighboring units are oriented at 180° and laterally displaced with respect to each other. This prevents any overlap of the phenanthroline rings and thus there is no possibility of any π-π inter-actions between aromatic rings.

Entities:  

Year:  2013        PMID: 24855465      PMCID: PMC4029211          DOI: 10.1107/S160053681303256X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For condensation of the free and complexed phendione ligand with primary amines, see: Dickerson & Summers (1970 ▶); MacDonnell & Bodige (1996 ▶); Moucheron et al. (1997 ▶); Westerlund et al. (2005 ▶); Williams et al. (2012 ▶). For use of the ligand in the construction of multinuclear homo- and heterometallic complexes as well as dendritic polynuclear metal structures, see: Fox et al. (1991 ▶); MacDonnell & Bodige (1996 ▶); Paw & Eisenberg (1997 ▶); Calderazzo et al. (1999 ▶); Campagna et al. (1999 ▶); Calucci et al. (2006 ▶). For anti­microbial activity of the free ligand and the title complex, see: Roy et al. (2008 ▶). For previous structural studies related to the title complex, see: Granger et al. (2005 ▶); Okamura et al. (2006 ▶); Roy et al. (2008 ▶). For synthesis of Pt(DMSO)2Cl2, see: Romeo & Scolaro (1998 ▶).

Experimental

Crystal data

[PtCl2(C12H6N2O2)]·C2H3N M = 517.23 Monoclinic, a = 6.7285 (2) Å b = 22.6380 (6) Å c = 9.7561 (3) Å β = 98.0740 (17)° V = 1471.32 (7) Å3 Z = 4 Mo Kα radiation μ = 9.91 mm−1 T = 298 K 0.40 × 0.06 × 0.05 mm

Data collection

Nonius KappaCCD diffractometer Absorption correction: gaussian (XPREP in SHELXL/PC; Sheldrick, 2008 ▶) T min = 0.174, T max = 0.629 11801 measured reflections 3345 independent reflections 2837 reflections with I > 2σ(I) R int = 0.081

Refinement

R[F 2 > 2σ(F 2)] = 0.039 wR(F 2) = 0.094 S = 1.16 3345 reflections 201 parameters H-atom parameters constrained Δρmax = 1.48 e Å−3 Δρmin = −1.30 e Å−3 Data collection: COLLECT (Nonius, 1998 ▶); cell refinement: COLLECT; data reduction: DENZO and SCALEPACK (Otwinowski & Minor, 1997) ▶; program(s) used to solve structure: SIR97 (Altomare et al., 1999 ▶); program(s) used to refine structure: SHELXL2013 (Sheldrick, 2008 ▶); molecular graphics: XP in SHELXTL/PC (Sheldrick, 2008 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) I. DOI: 10.1107/S160053681303256X/mw2118sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S160053681303256X/mw2118Isup2.hkl Additional supporting information: crystallographic information; 3D view; checkCIF report
[PtCl2(C12H6N2O2)]·C2H3NF(000) = 968
Mr = 517.23Dx = 2.335 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
a = 6.7285 (2) ÅCell parameters from 3185 reflections
b = 22.6380 (6) Åθ = 1.0–27.5°
c = 9.7561 (3) ŵ = 9.91 mm1
β = 98.0740 (17)°T = 298 K
V = 1471.32 (7) Å3Needle, yellow
Z = 40.40 × 0.06 × 0.05 mm
Nonius KappaCCD diffractometer2837 reflections with I > 2σ(I)
Radiation source: sealed tubeRint = 0.081
φ and ω scansθmax = 27.5°, θmin = 2.3°
Absorption correction: gaussian (XPREP in SHELXL/PC; Sheldrick, 2008)h = −7→8
Tmin = 0.174, Tmax = 0.629k = −29→26
11801 measured reflectionsl = −12→9
3345 independent reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.039H-atom parameters constrained
wR(F2) = 0.094w = 1/[σ2(Fo2) + (0.0216P)2 + 7.4291P] where P = (Fo2 + 2Fc2)/3
S = 1.16(Δ/σ)max = 0.002
3345 reflectionsΔρmax = 1.48 e Å3
201 parametersΔρmin = −1.30 e Å3
0 restraintsExtinction correction: SHELXL2013 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0038 (4)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
xyzUiso*/Ueq
Pt10.22275 (4)0.538338 (12)0.35597 (3)0.03226 (13)
Cl10.2456 (3)0.63727 (10)0.4031 (2)0.0535 (5)
Cl20.1736 (3)0.55973 (11)0.12469 (18)0.0490 (5)
O10.2795 (12)0.3386 (4)0.8277 (7)0.078 (2)
O20.2372 (13)0.2739 (4)0.5941 (9)0.088 (2)
N10.2643 (8)0.5130 (3)0.5574 (5)0.0332 (13)
C20.2906 (10)0.5475 (4)0.6672 (8)0.0413 (18)
H2A0.29270.58820.65480.050*
C30.3157 (11)0.5248 (4)0.8018 (8)0.047 (2)
H3A0.33460.55010.87770.057*
C40.3120 (12)0.4655 (4)0.8204 (8)0.050 (2)
H4A0.32900.44960.90930.060*
C50.2831 (11)0.4291 (4)0.7071 (8)0.0437 (19)
C60.2705 (13)0.3630 (5)0.7205 (10)0.060 (3)
C70.2476 (13)0.3264 (5)0.5856 (10)0.055 (2)
C80.2270 (12)0.3572 (4)0.4480 (9)0.0442 (18)
C90.2042 (13)0.3274 (4)0.3234 (9)0.055 (2)
H9A0.20250.28640.32050.066*
C100.1843 (13)0.3600 (5)0.2043 (9)0.056 (2)
H10A0.17150.34090.11920.067*
C110.1828 (11)0.4203 (4)0.2087 (8)0.0428 (18)
H11A0.16390.44140.12620.051*
N120.2080 (8)0.4498 (3)0.3291 (6)0.0339 (13)
C130.2300 (10)0.4186 (4)0.4489 (7)0.0342 (15)
C140.2592 (11)0.4543 (3)0.5756 (7)0.0335 (16)
N1A0.328 (2)0.6730 (6)−0.1587 (14)0.109 (4)
C2A0.2973 (18)0.6945 (6)−0.0552 (13)0.076 (3)
C3A0.2662 (19)0.7226 (6)0.0677 (12)0.085 (3)
H3A10.34140.75880.07750.127*
H3A20.30990.69720.14480.127*
H3A30.12590.73120.06500.127*
U11U22U33U12U13U23
Pt10.03263 (17)0.03434 (19)0.03048 (17)−0.00009 (12)0.00674 (10)−0.00010 (11)
Cl10.0700 (14)0.0367 (11)0.0542 (11)−0.0022 (10)0.0102 (9)−0.0047 (9)
Cl20.0597 (12)0.0558 (13)0.0317 (9)−0.0014 (10)0.0069 (8)0.0063 (8)
O10.095 (5)0.081 (6)0.060 (4)0.013 (4)0.015 (4)0.039 (4)
O20.127 (7)0.042 (5)0.094 (6)0.005 (4)0.018 (5)0.027 (4)
N10.024 (3)0.048 (4)0.029 (3)−0.003 (3)0.006 (2)−0.001 (3)
C20.033 (4)0.051 (5)0.041 (4)−0.002 (3)0.010 (3)−0.007 (3)
C30.041 (4)0.071 (7)0.030 (4)0.003 (4)0.009 (3)−0.010 (4)
C40.040 (4)0.076 (7)0.034 (4)0.006 (4)0.006 (3)0.009 (4)
C50.031 (4)0.062 (6)0.039 (4)0.005 (4)0.008 (3)0.007 (4)
C60.050 (5)0.074 (7)0.057 (5)0.012 (5)0.009 (4)0.024 (5)
C70.056 (5)0.050 (6)0.060 (5)0.007 (4)0.017 (4)0.018 (4)
C80.045 (4)0.030 (4)0.058 (5)0.009 (3)0.009 (3)0.008 (3)
C90.068 (6)0.036 (5)0.063 (5)−0.002 (4)0.012 (4)−0.010 (4)
C100.061 (5)0.056 (6)0.051 (5)−0.003 (5)0.010 (4)−0.015 (4)
C110.042 (4)0.044 (5)0.042 (4)−0.005 (4)0.007 (3)−0.009 (3)
N120.035 (3)0.037 (4)0.031 (3)0.001 (3)0.007 (2)−0.001 (2)
C130.028 (3)0.040 (4)0.035 (3)0.002 (3)0.005 (3)−0.003 (3)
C140.033 (3)0.037 (4)0.033 (3)0.000 (3)0.005 (3)0.001 (3)
N1A0.131 (10)0.094 (10)0.105 (9)−0.019 (8)0.023 (7)−0.019 (7)
C2A0.090 (8)0.056 (7)0.086 (8)−0.001 (6)0.021 (6)0.003 (6)
C3A0.106 (9)0.074 (9)0.076 (8)0.006 (7)0.019 (6)0.010 (6)
Pt1—N122.022 (7)C7—C81.503 (12)
Pt1—N12.028 (5)C8—C91.380 (12)
Pt1—Cl22.2860 (18)C8—C131.389 (11)
Pt1—Cl12.287 (2)C9—C101.367 (13)
O1—C61.177 (11)C9—H9A0.9300
O2—C71.192 (13)C10—C111.365 (13)
N1—C21.318 (10)C10—H10A0.9300
N1—C141.341 (10)C11—N121.341 (9)
C2—C31.398 (11)C11—H11A0.9300
C2—H2A0.9300N12—C131.356 (9)
C3—C41.356 (13)C13—C141.466 (10)
C3—H3A0.9300N1A—C2A1.166 (16)
C4—C51.370 (12)C2A—C3A1.399 (17)
C4—H4A0.9300C3A—H3A10.9600
C5—C141.395 (11)C3A—H3A20.9600
C5—C61.506 (14)C3A—H3A30.9600
C6—C71.545 (15)
N12—Pt1—N181.0 (2)C9—C8—C7123.0 (8)
N12—Pt1—Cl294.83 (17)C13—C8—C7117.4 (8)
N1—Pt1—Cl2175.8 (2)C10—C9—C8118.1 (9)
N12—Pt1—Cl1175.87 (16)C10—C9—H9A121.0
N1—Pt1—Cl194.9 (2)C8—C9—H9A121.0
Cl2—Pt1—Cl189.27 (8)C11—C10—C9120.8 (8)
C2—N1—C14118.9 (7)C11—C10—H10A119.6
C2—N1—Pt1127.2 (6)C9—C10—H10A119.6
C14—N1—Pt1113.8 (5)N12—C11—C10121.6 (8)
N1—C2—C3122.0 (9)N12—C11—H11A119.2
N1—C2—H2A119.0C10—C11—H11A119.2
C3—C2—H2A119.0C11—N12—C13118.7 (7)
C4—C3—C2119.2 (8)C11—N12—Pt1127.2 (5)
C4—C3—H3A120.4C13—N12—Pt1114.0 (5)
C2—C3—H3A120.4N12—C13—C8121.1 (7)
C3—C4—C5119.4 (8)N12—C13—C14115.0 (7)
C3—C4—H4A120.3C8—C13—C14123.9 (7)
C5—C4—H4A120.3N1—C14—C5121.6 (7)
C4—C5—C14118.9 (8)N1—C14—C13116.1 (6)
C4—C5—C6122.0 (8)C5—C14—C13122.3 (7)
C14—C5—C6119.1 (8)N1A—C2A—C3A177.3 (14)
O1—C6—C5123.2 (10)C2A—C3A—H3A1109.5
O1—C6—C7119.4 (11)C2A—C3A—H3A2109.5
C5—C6—C7117.4 (7)H3A1—C3A—H3A2109.5
O2—C7—C8121.7 (10)C2A—C3A—H3A3109.5
O2—C7—C6118.4 (9)H3A1—C3A—H3A3109.5
C8—C7—C6119.8 (9)H3A2—C3A—H3A3109.5
C9—C8—C13119.6 (8)
N12—Pt1—N1—C2−179.6 (6)C10—C11—N12—C13−1.8 (11)
Cl1—Pt1—N1—C20.9 (6)C10—C11—N12—Pt1177.0 (6)
N12—Pt1—N1—C14−1.0 (5)N1—Pt1—N12—C11−178.5 (6)
Cl1—Pt1—N1—C14179.4 (4)Cl2—Pt1—N12—C111.6 (6)
C14—N1—C2—C30.8 (10)N1—Pt1—N12—C130.3 (5)
Pt1—N1—C2—C3179.3 (5)Cl2—Pt1—N12—C13−179.6 (4)
N1—C2—C3—C4−0.3 (11)C11—N12—C13—C80.1 (10)
C2—C3—C4—C5−0.3 (12)Pt1—N12—C13—C8−178.9 (5)
C3—C4—C5—C140.3 (12)C11—N12—C13—C14179.3 (6)
C3—C4—C5—C6−177.9 (7)Pt1—N12—C13—C140.4 (7)
C4—C5—C6—O12.0 (13)C9—C8—C13—N121.0 (11)
C14—C5—C6—O1−176.2 (8)C7—C8—C13—N12−178.6 (7)
C4—C5—C6—C7−177.2 (7)C9—C8—C13—C14−178.2 (7)
C14—C5—C6—C74.6 (11)C7—C8—C13—C142.2 (11)
O1—C6—C7—O20.9 (14)C2—N1—C14—C5−0.8 (10)
C5—C6—C7—O2−179.9 (9)Pt1—N1—C14—C5−179.4 (5)
O1—C6—C7—C8177.3 (8)C2—N1—C14—C13−179.8 (6)
C5—C6—C7—C8−3.5 (12)Pt1—N1—C14—C131.5 (7)
O2—C7—C8—C9−3.1 (14)C4—C5—C14—N10.2 (11)
C6—C7—C8—C9−179.4 (8)C6—C5—C14—N1178.5 (7)
O2—C7—C8—C13176.5 (9)C4—C5—C14—C13179.2 (7)
C6—C7—C8—C130.1 (11)C6—C5—C14—C13−2.6 (11)
C13—C8—C9—C10−0.4 (12)N12—C13—C14—N1−1.3 (9)
C7—C8—C9—C10179.2 (8)C8—C13—C14—N1178.0 (7)
C8—C9—C10—C11−1.3 (13)N12—C13—C14—C5179.7 (6)
C9—C10—C11—N122.4 (13)C8—C13—C14—C5−1.1 (11)
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4.  Enantioselective luminescence quenching of DNA light-switch [Ru(phen)2dppz]2+ by electron transfer to structural homologue [Ru(phendione)2dppz]2+.

Authors:  Fredrik Westerlund; Frédéric Pierard; Mattias P Eng; Bengt Nordén; Per Lincoln
Journal:  J Phys Chem B       Date:  2005-09-15       Impact factor: 2.991

5.  Absorption Spectra, Photophysical Properties, and Redox Behavior of Stereochemically Pure Dendritic Ruthenium(II) Tetramers and Related Dinuclear and Mononuclear Complexes.

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