Literature DB >> 24853079

Genomics of wood-degrading fungi.

Robin A Ohm1, Robert Riley2, Asaf Salamov2, Byoungnam Min3, In-Geol Choi3, Igor V Grigoriev4.   

Abstract

Woody plants convert the energy of the sun into lignocellulosic biomass, which is an abundant substrate for bioenergy production. Fungi, especially wood decayers from the class Agaricomycetes, have evolved ways to degrade lignocellulose into its monomeric constituents, and understanding this process may facilitate the development of biofuels. Over the past decade genomics has become a powerful tool to study the Agaricomycetes. In 2004 the first sequenced genome of the white rot fungus Phanerochaete chrysosporium revealed a rich catalog of lignocellulolytic enzymes. In the decade that followed the number of genomes of Agaricomycetes grew to more than 75 and revealed a diversity of wood-decaying strategies. New technologies for high-throughput functional genomics are now needed to further study these organisms.
Copyright © 2014 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Agaricomycetes; Comparative genomics; Fungal genomics; Lignocellulose degradation; Sequencing; Wood decay

Mesh:

Substances:

Year:  2014        PMID: 24853079     DOI: 10.1016/j.fgb.2014.05.001

Source DB:  PubMed          Journal:  Fungal Genet Biol        ISSN: 1087-1845            Impact factor:   3.495


  34 in total

Review 1.  Fungal traits that drive ecosystem dynamics on land.

Authors:  Kathleen K Treseder; Jay T Lennon
Journal:  Microbiol Mol Biol Rev       Date:  2015-06       Impact factor: 11.056

Review 2.  Plant-polysaccharide-degrading enzymes from Basidiomycetes.

Authors:  Johanna Rytioja; Kristiina Hildén; Jennifer Yuzon; Annele Hatakka; Ronald P de Vries; Miia R Mäkelä
Journal:  Microbiol Mol Biol Rev       Date:  2014-12       Impact factor: 11.056

3.  Evolution of novel wood decay mechanisms in Agaricales revealed by the genome sequences of Fistulina hepatica and Cylindrobasidium torrendii.

Authors:  Dimitrios Floudas; Benjamin W Held; Robert Riley; Laszlo G Nagy; Gage Koehler; Anthony S Ransdell; Hina Younus; Julianna Chow; Jennifer Chiniquy; Anna Lipzen; Andrew Tritt; Hui Sun; Sajeet Haridas; Kurt LaButti; Robin A Ohm; Ursula Kües; Robert A Blanchette; Igor V Grigoriev; Robert E Minto; David S Hibbett
Journal:  Fungal Genet Biol       Date:  2015-02-12       Impact factor: 3.495

4.  Fungal Genomes and Insights into the Evolution of the Kingdom.

Authors:  Jason E Stajich
Journal:  Microbiol Spectr       Date:  2017-07

5.  Genome-wide study of saprotrophy-related genes in the basal fungus Conidiobolus heterosporus.

Authors:  Yulong Wang; Yong Nie; Deshui Yu; Xiangyun Xie; Li Qin; Yang Yang; Bo Huang
Journal:  Appl Microbiol Biotechnol       Date:  2020-05-22       Impact factor: 4.813

6.  The Transcription Factor Roc1 Is a Key Regulator of Cellulose Degradation in the Wood-Decaying Mushroom Schizophyllum commune.

Authors:  Ioana M Marian; Peter Jan Vonk; Ivan D Valdes; Kerrie Barry; Benedict Bostock; Akiko Carver; Chris Daum; Harry Lerner; Anna Lipzen; Hongjae Park; Margo B P Schuller; Martin Tegelaar; Andrew Tritt; Jeremy Schmutz; Jane Grimwood; Luis G Lugones; In-Geol Choi; Han A B Wösten; Igor V Grigoriev; Robin A Ohm
Journal:  mBio       Date:  2022-05-23       Impact factor: 7.786

7.  Regulation of Gene Expression during the Onset of Ligninolytic Oxidation by Phanerochaete chrysosporium on Spruce Wood.

Authors:  Premsagar Korripally; Christopher G Hunt; Carl J Houtman; Don C Jones; Peter J Kitin; Dan Cullen; Kenneth E Hammel
Journal:  Appl Environ Microbiol       Date:  2015-09-04       Impact factor: 4.792

8.  Deciphering lignocellulose deconstruction by the white rot fungus Irpex lacteus based on genomic and transcriptomic analyses.

Authors:  Xing Qin; Xiaoyun Su; Huiying Luo; Rui Ma; Bin Yao; Fuying Ma
Journal:  Biotechnol Biofuels       Date:  2018-03-02       Impact factor: 6.040

9.  Multi-omics analysis provides insights into lignocellulosic biomass degradation by Laetiporus sulphureus ATCC 52600.

Authors:  Fernanda Lopes de Figueiredo; Ana Carolina Piva de Oliveira; Cesar Rafael Fanchini Terrasan; Thiago Augusto Gonçalves; Jaqueline Aline Gerhardt; Geizecler Tomazetto; Gabriela Felix Persinoti; Marcelo Ventura Rubio; Jennifer Andrea Tamayo Peña; Michelle Fernandes Araújo; Maria Augusta de Carvalho Silvello; Telma Teixeira Franco; Sarita Cândida Rabelo; Rosana Goldbeck; Fabio Marcio Squina; André Damasio
Journal:  Biotechnol Biofuels       Date:  2021-04-17       Impact factor: 6.040

Review 10.  Advancing understanding of microbial bioenergy conversion processes by activity-based protein profiling.

Authors:  Yun Liu; James K Fredrickson; Natalie C Sadler; Premchendar Nandhikonda; Richard D Smith; Aaron T Wright
Journal:  Biotechnol Biofuels       Date:  2015-09-25       Impact factor: 6.040

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