Literature DB >> 24852796

A comparative analysis of the bistability switch for platelet aggregation by logic ODE based dynamical modeling.

Marcel Mischnik1, Stepan Gambaryan, Hariharan Subramanian, Jörg Geiger, Claudia Schütz, Jens Timmer, Thomas Dandekar.   

Abstract

A kinetic description of the fragile equilibrium in thrombozytes regulating blood flow would be an important basis for rational medical interventions. Challenges for such a model include regulation by a complex bistability switch that determines the transition from reversible to irreversible aggregation and sparse data on the kinetics. A so far scarcely applied technique is given by the derivation of ordinary differential equations from Boolean expressions, which are called logic ODEs. We employ a combination of light-scattering based thrombocyte aggregation data, western blot and calcium measurements to compare three different ODE approaches regarding their suitability to achieve a data-consistent model of the switch. Our analysis reveals the standardized qualitative dynamical system approach (SQUAD) to be a better choice than classical mass action formalisms. Furthermore, we analyze the dynamical properties of the platelet aggregation threshold as a basis for medical interventions such as novel platelet aggregation inhibitors.

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Year:  2014        PMID: 24852796     DOI: 10.1039/c4mb00170b

Source DB:  PubMed          Journal:  Mol Biosyst        ISSN: 1742-2051


  3 in total

1.  Analyzing pharmacological intervention points: A method to calculate external stimuli to switch between steady states in regulatory networks.

Authors:  Tim Breitenbach; Chunguang Liang; Niklas Beyersdorf; Thomas Dandekar
Journal:  PLoS Comput Biol       Date:  2019-07-16       Impact factor: 4.475

2.  Comparison of the central human and mouse platelet signaling cascade by systems biological analysis.

Authors:  Johannes Balkenhol; Kristin V Kaltdorf; Elmina Mammadova-Bach; Attila Braun; Bernhard Nieswandt; Marcus Dittrich; Thomas Dandekar
Journal:  BMC Genomics       Date:  2020-12-22       Impact factor: 3.969

Review 3.  Mechanisms Underlying Dichotomous Procoagulant COAT Platelet Generation-A Conceptual Review Summarizing Current Knowledge.

Authors:  Lucas Veuthey; Alessandro Aliotta; Debora Bertaggia Calderara; Cindy Pereira Portela; Lorenzo Alberio
Journal:  Int J Mol Sci       Date:  2022-02-25       Impact factor: 5.923

  3 in total

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