Literature DB >> 24850204

Preanalytical Procedures for DNA Studies: The Experience of the Interinstitutional Multidisciplinary BioBank (BioBIM).

Raffaele Palmirotta1, Giorgia Ludovici, Maria Laura De Marchis, Annalisa Savonarola, Barbara Leone, Antonella Spila, Francesco De Angelis, David Della Morte, Patrizia Ferroni, Fiorella Guadagni.   

Abstract

Preanalytical variables, including the anticoagulants and stabilizing agents, time, storage temperature, and methods of DNA extraction applied to blood samples, may affect quality and quantity of isolated nucleic acids for future genomic applications. Considering the large number of collected samples, standard operating procedure optimization for whole blood preservation before DNA extraction is a crucial step in a biological repository. Moreover, the future application of the biological material may not be known subsequent to its extraction. To define standard operating procedures for whole blood preservation before DNA extraction, we aimed to determine whether different combinations of anticoagulants, blood storage temperatures, and time intervals before storage at -80°C might have an impact on quality and quantity of subsequent extracted DNA. After spectrophotometer quantification, the quality and integrity of DNA were assessed by agarose gel electrophoresis, polymerase chain reaction, and real-time polymerase chain reaction methods. We observed that decrease in DNA recovery during blood storage time was more pronounced at room temperature than at 4°C. Based on our experience, we recommend as anticoagulants of choice sodium citrate and ethylenediaminetetraacetate, whereas sodium citrate theophylline adenosine dipyridamole could represent an alternative choice, excluding a priori lithium heparin and Fluoride-Oxalate. Based on the overall evaluation criteria, we conclude that the procedures necessary to preserve the whole blood before the DNA extraction may have a significant impact on downstream molecular biological applications.

Entities:  

Year:  2011        PMID: 24850204     DOI: 10.1089/bio.2010.0027

Source DB:  PubMed          Journal:  Biopreserv Biobank        ISSN: 1947-5543            Impact factor:   2.300


  14 in total

1.  Establishment of a biorepository for migraine research: the experience of Interinstitutional Multidisciplinary BioBank (BioBIM).

Authors:  Raffaele Palmirotta; Piero Barbanti; Giorgia Ludovici; Gabriella Egeo; Cinzia Aurilia; Luisa Fofi; Maria Laura De Marchis; Antonella Spila; Patrizia Ferroni; David Della-Morte; Fiorella Guadagni
Journal:  Neurol Sci       Date:  2013-01-26       Impact factor: 3.307

2.  Long-term whole blood DNA preservation by cost-efficient cryosilicification.

Authors:  Liang Zhou; Qi Lei; Jimin Guo; Yuanyuan Gao; Jianjun Shi; Hong Yu; Wenxiang Yin; Jiangfan Cao; Botao Xiao; Jacopo Andreo; Romy Ettlinger; C Jeffrey Brinker; Stefan Wuttke; Wei Zhu
Journal:  Nat Commun       Date:  2022-10-21       Impact factor: 17.694

3.  Progesterone receptor gene (PROGINS) polymorphism correlates with late onset of migraine.

Authors:  Raffaele Palmirotta; Piero Barbanti; Cristiano Ialongo; Maria Laura De Marchis; Jhessica Alessandroni; Gabriella Egeo; Cinzia Aurilia; Luisa Fofi; Maria Giovanna Valente; Patrizia Ferroni; David Della-Morte; Fiorella Guadagni
Journal:  DNA Cell Biol       Date:  2014-12-10       Impact factor: 3.311

4.  Look beyond Catechol-O-Methyltransferase genotype for cathecolamines derangement in migraine: the BioBIM rs4818 and rs4680 polymorphisms study.

Authors:  Maria Laura De Marchis; Piero Barbanti; Raffaele Palmirotta; Gabriella Egeo; Cinzia Aurilia; Luisa Fofi; Serena Piroso; Cristiano Ialongo; David Della-Morte; Giovanni D'Andrea; Patrizia Ferroni; Fiorella Guadagni
Journal:  J Headache Pain       Date:  2015-04-30       Impact factor: 7.277

5.  CTC-mRNA (AR-V7) Analysis from Blood Samples-Impact of Blood Collection Tube and Storage Time.

Authors:  Alison W S Luk; Yafeng Ma; Pei N Ding; Francis P Young; Wei Chua; Bavanthi Balakrishnar; Daniel T Dransfield; Paul de Souza; Therese M Becker
Journal:  Int J Mol Sci       Date:  2017-05-12       Impact factor: 5.923

6.  Preanalytical blood sample workup for cell-free DNA analysis using Droplet Digital PCR for future molecular cancer diagnostics.

Authors:  Joost H van Ginkel; Daan A van den Broek; Joyce van Kuik; Dorothé Linders; Roel de Weger; Stefan M Willems; Manon M H Huibers
Journal:  Cancer Med       Date:  2017-09-21       Impact factor: 4.452

7.  Comparison of Automated and Manual DNA Isolation Methods of Liquid-Based Cytology Samples.

Authors:  Irma G Domínguez-Vigil; Víctor H Barajas-Olmos; Lenny Gallardo-Alvarado; Antonio A Pérez-Maya; Maria L Garza-Rodríguez; Gerardo I Magallanes-Garza; Servando Cardona-Huerta; Daniel H Méndez-Lozano; Oscar Vidal-Gutiérrez; David F Cantú De León; Hugo A Barrera-Saldaña
Journal:  Biopreserv Biobank       Date:  2019-09-26       Impact factor: 2.300

8.  Role of genetic polymorphisms of ion channels in the pathophysiology of coronary microvascular dysfunction and ischemic heart disease.

Authors:  Francesco Fedele; Massimo Mancone; William M Chilian; Paolo Severino; Emanuele Canali; Suzanna Logan; Maria Laura De Marchis; Maurizio Volterrani; Raffaele Palmirotta; Fiorella Guadagni
Journal:  Basic Res Cardiol       Date:  2013-09-26       Impact factor: 17.165

9.  gDNA extraction yield and methylation status of blood samples are affected by long-term storage conditions.

Authors:  Charlotte Schröder; Werner Steimer
Journal:  PLoS One       Date:  2018-02-07       Impact factor: 3.240

10.  Dissection of major cancer gene variants in subsets of circulating tumor cells in advanced breast cancer.

Authors:  Stella D'Oronzo; Domenica Lovero; Raffaele Palmirotta; Luigia Stefania Stucci; Marco Tucci; Claudia Felici; Eliano Cascardi; Carmela Giardina; Paola Cafforio; Franco Silvestris
Journal:  Sci Rep       Date:  2019-11-21       Impact factor: 4.379

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