Literature DB >> 24840599

Identification of the linkage group of the Z sex chromosomes of the sand lizard (Lacerta agilis, Lacertidae) and elucidation of karyotype evolution in lacertid lizards.

Kornsorn Srikulnath1, Kazumi Matsubara, Yoshinobu Uno, Chizuko Nishida, Mats Olsson, Yoichi Matsuda.   

Abstract

The sand lizard (Lacerta agilis, Lacertidae) has a chromosome number of 2n = 38, with 17 pairs of acrocentric chromosomes, one pair of microchromosomes, a large acrocentric Z chromosome, and a micro-W chromosome. To investigate the process of karyotype evolution in L. agilis, we performed chromosome banding and fluorescent in situ hybridization for gene mapping and constructed a cytogenetic map with 86 functional genes. Chromosome banding revealed that the Z chromosome is the fifth largest chromosome. The cytogenetic map revealed homology of the L. agilis Z chromosome with chicken chromosomes 6 and 9. Comparison of the L. agilis cytogenetic map with those of four Toxicofera species with many microchromosomes (Elaphe quadrivirgata, Varanus salvator macromaculatus, Leiolepis reevesii rubritaeniata, and Anolis carolinensis) showed highly conserved linkage homology of L. agilis chromosomes (LAG) 1, 2, 3, 4, 5(Z), 7, 8, 9, and 10 with macrochromosomes and/or macrochromosome segments of the four Toxicofera species. Most of the genes located on the microchromosomes of Toxicofera were localized to LAG6, small acrocentric chromosomes (LAG11-18), and a microchromosome (LAG19) in L. agilis. These results suggest that the L. agilis karyotype resulted from frequent fusions of microchromosomes, which occurred in the ancestral karyotype of Toxicofera and led to the disappearance of microchromosomes and the appearance of many small macrochromosomes.

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Year:  2014        PMID: 24840599     DOI: 10.1007/s00412-014-0467-8

Source DB:  PubMed          Journal:  Chromosoma        ISSN: 0009-5915            Impact factor:   4.316


  21 in total

1.  Evidence for different origin of sex chromosomes in snakes, birds, and mammals and step-wise differentiation of snake sex chromosomes.

Authors:  Kazumi Matsubara; Hiroshi Tarui; Michihisa Toriba; Kazuhiko Yamada; Chizuko Nishida-Umehara; Kiyokazu Agata; Yoichi Matsuda
Journal:  Proc Natl Acad Sci U S A       Date:  2006-11-16       Impact factor: 11.205

2.  The origin and differentiation process of X and Y chromosomes of the black marsh turtle (Siebenrockiella crassicollis, Geoemydidae, Testudines).

Authors:  Taiki Kawagoshi; Chizuko Nishida; Yoichi Matsuda
Journal:  Chromosome Res       Date:  2012-01       Impact factor: 5.239

3.  Karyotype evolution in monitor lizards: cross-species chromosome mapping of cDNA reveals highly conserved synteny and gene order in the Toxicofera clade.

Authors:  Kornsorn Srikulnath; Yoshinobu Uno; Chizuko Nishida; Yoichi Matsuda
Journal:  Chromosome Res       Date:  2013-12-17       Impact factor: 5.239

4.  Anolis sex chromosomes are derived from a single ancestral pair.

Authors:  Tony Gamble; Anthony J Geneva; Richard E Glor; David Zarkower
Journal:  Evolution       Date:  2013-12-23       Impact factor: 3.694

5.  Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution.

Authors: 
Journal:  Nature       Date:  2004-12-09       Impact factor: 49.962

6.  Intra-genomic GC heterogeneity in sauropsids: evolutionary insights from cDNA mapping and GC(3) profiling in snake.

Authors:  Kazumi Matsubara; Shigehiro Kuraku; Hiroshi Tarui; Osamu Nishimura; Chizuko Nishida; Kiyokazu Agata; Yoshinori Kumazawa; Yoichi Matsuda
Journal:  BMC Genomics       Date:  2012-11-09       Impact factor: 3.969

7.  The genome of the green anole lizard and a comparative analysis with birds and mammals.

Authors:  Jessica Alföldi; Federica Di Palma; Manfred Grabherr; Christina Williams; Lesheng Kong; Evan Mauceli; Pamela Russell; Craig B Lowe; Richard E Glor; Jacob D Jaffe; David A Ray; Stephane Boissinot; Andrew M Shedlock; Christopher Botka; Todd A Castoe; John K Colbourne; Matthew K Fujita; Ricardo Godinez Moreno; Boudewijn F ten Hallers; David Haussler; Andreas Heger; David Heiman; Daniel E Janes; Jeremy Johnson; Pieter J de Jong; Maxim Y Koriabine; Marcia Lara; Peter A Novick; Chris L Organ; Sally E Peach; Steven Poe; David D Pollock; Kevin de Queiroz; Thomas Sanger; Steve Searle; Jeremy D Smith; Zachary Smith; Ross Swofford; Jason Turner-Maier; Juli Wade; Sarah Young; Amonida Zadissa; Scott V Edwards; Travis C Glenn; Christopher J Schneider; Jonathan B Losos; Eric S Lander; Matthew Breen; Chris P Ponting; Kerstin Lindblad-Toh
Journal:  Nature       Date:  2011-08-31       Impact factor: 49.962

8.  Inference of the protokaryotypes of amniotes and tetrapods and the evolutionary processes of microchromosomes from comparative gene mapping.

Authors:  Yoshinobu Uno; Chizuko Nishida; Hiroshi Tarui; Satoshi Ishishita; Chiyo Takagi; Osamu Nishimura; Junko Ishijima; Hidetoshi Ota; Ayumi Kosaka; Kazumi Matsubara; Yasunori Murakami; Shigeru Kuratani; Naoto Ueno; Kiyokazu Agata; Yoichi Matsuda
Journal:  PLoS One       Date:  2012-12-31       Impact factor: 3.240

9.  The molecular basis of chromosome orthologies and sex chromosomal differentiation in palaeognathous birds.

Authors:  Chizuko Nishida-Umehara; Yayoi Tsuda; Junko Ishijima; Junko Ando; Atushi Fujiwara; Yoichi Matsuda; Darren K Griffin
Journal:  Chromosome Res       Date:  2007-07-03       Impact factor: 4.620

10.  Sequence and gene content of a large fragment of a lizard sex chromosome and evaluation of candidate sex differentiating gene R-spondin 1.

Authors:  Tariq Ezaz; Bhumika Azad; Denis O'Meally; Matthew J Young; Kazumi Matsubara; Melanie J Edwards; Xiuwen Zhang; Clare E Holleley; Janine E Deakin; Jennifer A Marshall Graves; Arthur Georges; Scott V Edwards; Stephen D Sarre
Journal:  BMC Genomics       Date:  2013-12-17       Impact factor: 3.969

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  20 in total

1.  Low rate of interchromosomal rearrangements during old radiation of gekkotan lizards (Squamata: Gekkota).

Authors:  Martina Johnson Pokorná; Vladimir A Trifonov; Willem Rens; Malcolm A Ferguson-Smith; Lukáš Kratochvíl
Journal:  Chromosome Res       Date:  2015-02-11       Impact factor: 5.239

2.  Mammalian X homolog acts as sex chromosome in lacertid lizards.

Authors:  M Rovatsos; J Vukić; L Kratochvíl
Journal:  Heredity (Edinb)       Date:  2016-03-16       Impact factor: 3.821

3.  High-density sex-specific linkage maps of a European tree frog (Hyla arborea) identify the sex chromosome without information on offspring sex.

Authors:  A Brelsford; C Dufresnes; N Perrin
Journal:  Heredity (Edinb)       Date:  2015-09-16       Impact factor: 3.821

4.  Molecular cloning and characterization of satellite DNA sequences from constitutive heterochromatin of the habu snake (Protobothrops flavoviridis, Viperidae) and the Burmese python (Python bivittatus, Pythonidae).

Authors:  Kazumi Matsubara; Yoshinobu Uno; Kornsorn Srikulnath; Risako Seki; Chizuko Nishida; Yoichi Matsuda
Journal:  Chromosoma       Date:  2015-07-24       Impact factor: 4.316

5.  Sex chromosome evolution among amniotes: is the origin of sex chromosomes non-random?

Authors:  Lukáš Kratochvíl; Tony Gamble; Michail Rovatsos
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2021-07-26       Impact factor: 6.671

6.  Microchromosome polymorphism in the sand lizard, Lacerta agilis Linnaeus, 1758 (Reptilia, Squamata).

Authors:  Artem P Lisachov; Pavel M Borodin
Journal:  Comp Cytogenet       Date:  2016-09-08       Impact factor: 1.800

Review 7.  Role of Chromosome Changes in Crocodylus Evolution and Diversity.

Authors:  Kornsorn Srikulnath; Watcharaporn Thapana; Narongrit Muangmai
Journal:  Genomics Inform       Date:  2015-12-31

8.  Whole-chromosome fusions in the karyotype evolution of Sceloporus (Iguania, Reptilia) are more frequent in sex chromosomes than autosomes.

Authors:  Artem P Lisachov; Katerina V Tishakova; Svetlana A Romanenko; Anna S Molodtseva; Dmitry Yu Prokopov; Jorge C Pereira; Malcolm A Ferguson-Smith; Pavel M Borodin; Vladimir A Trifonov
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2021-07-26       Impact factor: 6.671

9.  Karyotype Reorganization in the Hokou Gecko (Gekko hokouensis, Gekkonidae): The Process of Microchromosome Disappearance in Gekkota.

Authors:  Kornsorn Srikulnath; Yoshinobu Uno; Chizuko Nishida; Hidetoshi Ota; Yoichi Matsuda
Journal:  PLoS One       Date:  2015-08-04       Impact factor: 3.240

10.  Anchoring genome sequence to chromosomes of the central bearded dragon (Pogona vitticeps) enables reconstruction of ancestral squamate macrochromosomes and identifies sequence content of the Z chromosome.

Authors:  Janine E Deakin; Melanie J Edwards; Hardip Patel; Denis O'Meally; Jinmin Lian; Rachael Stenhouse; Sam Ryan; Alexandra M Livernois; Bhumika Azad; Clare E Holleley; Qiye Li; Arthur Georges
Journal:  BMC Genomics       Date:  2016-06-10       Impact factor: 3.969

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