Literature DB >> 24840313

Importance of C*-H based modes and large amplitude motion effects in vibrational circular dichroism spectra: the case of the chiral adduct of dimethyl fumarate and anthracene.

Marco Passarello1, Sergio Abbate, Giovanna Longhi, Susan Lepri, Renzo Ruzziconi, Valentin Paul Nicu.   

Abstract

The role played by the C*-H based modes (C* being the chiral carbon atom) and the large amplitude motions in the vibrational absorption (VA) and vibrational circular dichroism (VCD) spectra is investigated. The example of an adduct of dimethyl fumarate and anthracene, i.e., dimethyl-(+)-(11R,12R)-9,10-dihydro-9,10-ethanoanthracene-11,12-dicarboxylate, and two deuterated isotopomers thereof specially synthesized for this goal, are considered. By comparing the experimental and DFT calculated spectra of the undeuterated and deuterated species, we demonstrate that the C*-H bending, rocking, and stretching modes in the VA and VCD spectra are clearly identified in well defined spectroscopic features. Further, significant information about the conformer distribution is gathered by analyzing the VA and VCD data of both the fingerprint and the C-H stretching regions, with particular attention paid to the band shape data. Effects related to the large amplitude motions of the two methoxy moieties have been simulated by performing linear transit (LT) calculations, which consists of varying systematically the relative positions of the two methoxy moieties and calculating VCD spectra for the partially optimized structures obtained in this way. The LT method allows one to improve the quality of calculated spectra, as compared to experimental results, especially in regard to relative intensities and bandwidths.

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Year:  2014        PMID: 24840313     DOI: 10.1021/jp502544v

Source DB:  PubMed          Journal:  J Phys Chem A        ISSN: 1089-5639            Impact factor:   2.781


  3 in total

1.  Analysis of Vibrational Circular Dichroism Spectra of Peptides: A Generalized Coupled Oscillator Approach of a Small Peptide Model Using VCDtools.

Authors:  Mark A J Koenis; Lucas Visscher; Wybren J Buma; Valentin P Nicu
Journal:  J Phys Chem B       Date:  2020-02-21       Impact factor: 2.991

2.  CF3: an overlooked chromophore in VCD spectra. A review of recent applications in structural determination.

Authors:  Sergio Abbate; Giovanna Longhi; Giuseppe Mazzeo; Claudio Villani; Silvija Petković; Renzo Ruzziconi
Journal:  RSC Adv       Date:  2019-04-16       Impact factor: 3.361

3.  Solvent Effects and Aggregation Phenomena Studied by Vibrational Optical Activity and Molecular Dynamics: The Case of Pantolactone.

Authors:  Simone Ghidinelli; Sergio Abbate; Jun Koshoubu; Yasuyuki Araki; Takehiko Wada; Giovanna Longhi
Journal:  J Phys Chem B       Date:  2020-05-26       Impact factor: 2.991

  3 in total

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