Literature DB >> 24839966

Pancreatic Cancer Database: an integrative resource for pancreatic cancer.

Joji Kurian Thomas1, Min-Sik Kim2, Lavanya Balakrishnan3, Vishalakshi Nanjappa1, Rajesh Raju3, Arivusudar Marimuthu3, Aneesha Radhakrishnan4, Babylakshmi Muthusamy5, Aafaque Ahmad Khan3, Sruthi Sakamuri6, Shantal Gupta Tankala7, Mukul Singal8, Bipin Nair9, Ravi Sirdeshmukh3, Aditi Chatterjee3, T S Keshava Prasad1, Anirban Maitra10, Harsha Gowda3, Ralph H Hruban11, Akhilesh Pandey12.   

Abstract

Pancreatic cancer is the fourth leading cause of cancer-related death in the world. The etiology of pancreatic cancer is heterogeneous with a wide range of alterations that have already been reported at the level of the genome, transcriptome, and proteome. The past decade has witnessed a large number of experimental studies using high-throughput technology platforms to identify genes whose expression at the transcript or protein levels is altered in pancreatic cancer. Based on expression studies, a number of molecules have also been proposed as potential biomarkers for diagnosis and prognosis of this deadly cancer. Currently, there are no repositories which provide an integrative view of multiple Omics data sets from published research on pancreatic cancer. Here, we describe the development of a web-based resource, Pancreatic Cancer Database (http://www.pancreaticcancerdatabase.org), as a unified platform for pancreatic cancer research. PCD contains manually curated information pertaining to quantitative alterations in miRNA, mRNA, and proteins obtained from small-scale as well as high-throughput studies of pancreatic cancer tissues and cell lines. We believe that PCD will serve as an integrative platform for scientific community involved in pancreatic cancer research.

Entities:  

Keywords:  biomarker; body fluids; chronic pancreatitis; secreted

Mesh:

Substances:

Year:  2014        PMID: 24839966      PMCID: PMC4119079          DOI: 10.4161/cbt.29188

Source DB:  PubMed          Journal:  Cancer Biol Ther        ISSN: 1538-4047            Impact factor:   4.742


  20 in total

Review 1.  Clinical potential of microRNAs in pancreatic ductal adenocarcinoma.

Authors:  Colin W Steele; Karin A Oien; Colin J McKay; Nigel B Jamieson
Journal:  Pancreas       Date:  2011-11       Impact factor: 3.327

2.  Relationship of carbohydrate antigen 19-9 and Lewis antigens in pancreatic cancer.

Authors:  M A Tempero; E Uchida; H Takasaki; D A Burnett; Z Steplewski; P M Pour
Journal:  Cancer Res       Date:  1987-10-15       Impact factor: 12.701

Review 3.  Pancreatic cancer.

Authors:  Audrey Vincent; Joseph Herman; Rich Schulick; Ralph H Hruban; Michael Goggins
Journal:  Lancet       Date:  2011-05-26       Impact factor: 79.321

4.  Human protein reference database--2006 update.

Authors:  Gopa R Mishra; M Suresh; K Kumaran; N Kannabiran; Shubha Suresh; P Bala; K Shivakumar; N Anuradha; Raghunath Reddy; T Madhan Raghavan; Shalini Menon; G Hanumanthu; Malvika Gupta; Sapna Upendran; Shweta Gupta; M Mahesh; Bincy Jacob; Pinky Mathew; Pritam Chatterjee; K S Arun; Salil Sharma; K N Chandrika; Nandan Deshpande; Kshitish Palvankar; R Raghavnath; R Krishnakanth; Hiren Karathia; B Rekha; Rashmi Nayak; G Vishnupriya; H G Mohan Kumar; M Nagini; G S Sameer Kumar; Rojan Jose; P Deepthi; S Sujatha Mohan; T K B Gandhi; H C Harsha; Krishna S Deshpande; Malabika Sarker; T S Keshava Prasad; Akhilesh Pandey
Journal:  Nucleic Acids Res       Date:  2006-01-01       Impact factor: 16.971

5.  Entrez Gene: gene-centered information at NCBI.

Authors:  Donna Maglott; Jim Ostell; Kim D Pruitt; Tatiana Tatusova
Journal:  Nucleic Acids Res       Date:  2006-12-05       Impact factor: 16.971

6.  Entrez Gene: gene-centered information at NCBI.

Authors:  Donna Maglott; Jim Ostell; Kim D Pruitt; Tatiana Tatusova
Journal:  Nucleic Acids Res       Date:  2005-01-01       Impact factor: 16.971

7.  Online Mendelian Inheritance in Man (OMIM), a knowledgebase of human genes and genetic disorders.

Authors:  Ada Hamosh; Alan F Scott; Joanna S Amberger; Carol A Bocchini; Victor A McKusick
Journal:  Nucleic Acids Res       Date:  2005-01-01       Impact factor: 16.971

8.  PCMdb: pancreatic cancer methylation database.

Authors:  Gandharva Nagpal; Minakshi Sharma; Shailesh Kumar; Kumardeep Chaudhary; Sudheer Gupta; Ankur Gautam; Gajendra P S Raghava
Journal:  Sci Rep       Date:  2014-02-26       Impact factor: 4.379

9.  Human Protein Reference Database--2009 update.

Authors:  T S Keshava Prasad; Renu Goel; Kumaran Kandasamy; Shivakumar Keerthikumar; Sameer Kumar; Suresh Mathivanan; Deepthi Telikicherla; Rajesh Raju; Beema Shafreen; Abhilash Venugopal; Lavanya Balakrishnan; Arivusudar Marimuthu; Sutopa Banerjee; Devi S Somanathan; Aimy Sebastian; Sandhya Rani; Somak Ray; C J Harrys Kishore; Sashi Kanth; Mukhtar Ahmed; Manoj K Kashyap; Riaz Mohmood; Y L Ramachandra; V Krishna; B Abdul Rahiman; Sujatha Mohan; Prathibha Ranganathan; Subhashri Ramabadran; Raghothama Chaerkady; Akhilesh Pandey
Journal:  Nucleic Acids Res       Date:  2008-11-06       Impact factor: 16.971

10.  The HGNC Database in 2008: a resource for the human genome.

Authors:  Elspeth A Bruford; Michael J Lush; Mathew W Wright; Tam P Sneddon; Sue Povey; Ewan Birney
Journal:  Nucleic Acids Res       Date:  2007-11-04       Impact factor: 16.971

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  28 in total

Review 1.  Head mass in chronic pancreatitis: Inflammatory or malignant.

Authors:  Amit K Dutta; Ashok Chacko
Journal:  World J Gastrointest Endosc       Date:  2015-03-16

2.  Basaloid carcinoma of the pancreas--clinicopathological presentation and oncogenetic snapshot of a rare entity.

Authors:  A Marcell Szasz; Ildiko Szirtes; Balazs Tihanyi; Bernadett Barkaszi; Zsolt Baranyai; Tibor Tihanyi; Laszlo Harsanyi; Jozsef Timar; Janina Kulka
Journal:  Virchows Arch       Date:  2014-11-29       Impact factor: 4.064

3.  Is the Early Detection of Pancreatic Cancer Possible? It Is Good News, Bad News.

Authors:  Ralph H Hruban
Journal:  Pancreas       Date:  2019 May/Jun       Impact factor: 3.327

4.  Molecular signatures of mRNAs and miRNAs as prognostic biomarkers in pancreatobiliary and intestinal types of periampullary adenocarcinomas.

Authors:  V Sandhu; I M Bowitz Lothe; K J Labori; O C Lingjærde; T Buanes; A M Dalsgaard; M L Skrede; J Hamfjord; T Haaland; T J Eide; A-L Børresen-Dale; T Ikdahl; E H Kure
Journal:  Mol Oncol       Date:  2014-12-19       Impact factor: 6.603

5.  FN1 encoding fibronectin as a pivotal signaling gene for therapeutic intervention against pancreatic cancer.

Authors:  Gayathri Ashok; Sravan Kumar Miryala; Megha Treesa Saju; Anand Anbarasu; Sudha Ramaiah
Journal:  Mol Genet Genomics       Date:  2022-08-18       Impact factor: 2.980

6.  Proteogenomic characterization of pancreatic ductal adenocarcinoma.

Authors:  Liwei Cao; Chen Huang; Daniel Cui Zhou; Yingwei Hu; T Mamie Lih; Sara R Savage; Karsten Krug; David J Clark; Michael Schnaubelt; Lijun Chen; Felipe da Veiga Leprevost; Rodrigo Vargas Eguez; Weiming Yang; Jianbo Pan; Bo Wen; Yongchao Dou; Wen Jiang; Yuxing Liao; Zhiao Shi; Nadezhda V Terekhanova; Song Cao; Rita Jui-Hsien Lu; Yize Li; Ruiyang Liu; Houxiang Zhu; Peter Ronning; Yige Wu; Matthew A Wyczalkowski; Hariharan Easwaran; Ludmila Danilova; Arvind Singh Mer; Seungyeul Yoo; Joshua M Wang; Wenke Liu; Benjamin Haibe-Kains; Mathangi Thiagarajan; Scott D Jewell; Galen Hostetter; Chelsea J Newton; Qing Kay Li; Michael H Roehrl; David Fenyö; Pei Wang; Alexey I Nesvizhskii; D R Mani; Gilbert S Omenn; Emily S Boja; Mehdi Mesri; Ana I Robles; Henry Rodriguez; Oliver F Bathe; Daniel W Chan; Ralph H Hruban; Li Ding; Bing Zhang; Hui Zhang
Journal:  Cell       Date:  2021-09-16       Impact factor: 66.850

Review 7.  A critical review of datasets and computational suites for improving cancer theranostics and biomarker discovery.

Authors:  Gayathri Ashok; Sudha Ramaiah
Journal:  Med Oncol       Date:  2022-09-29       Impact factor: 3.738

Review 8.  The next "sweet" spot for pancreatic ductal adenocarcinoma: Glycoprotein for early detection.

Authors:  Yuanwei Xu; Yuefan Wang; Naseruddin Höti; David J Clark; Shao-Yung Chen; Hui Zhang
Journal:  Mass Spectrom Rev       Date:  2021-11-12       Impact factor: 9.011

9.  Web-based tools for microRNAs involved in human cancer.

Authors:  Fermín Mar-Aguilar; Cristina Rodríguez-Padilla; Diana Reséndez-Pérez
Journal:  Oncol Lett       Date:  2016-04-18       Impact factor: 2.967

10.  Pancreatic Cancer Chemoprevention Translational Workshop: Meeting Report.

Authors:  Mark Steven Miller; Peter Allen; Teresa A Brentnall; Michael Goggins; Ralph H Hruban; Gloria M Petersen; Chinthalapally V Rao; David C Whitcomb; Randall E Brand; Suresh T Chari; Alison P Klein; David M Lubman; Andrew D Rhim; Diane M Simeone; Brian M Wolpin; Asad Umar; Sudhir Srivastava; Vernon E Steele; Jo Ann S Rinaudo
Journal:  Pancreas       Date:  2016-09       Impact factor: 3.327

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