Literature DB >> 24839388

Local Histograms for Classifying H&E Stained Tissues.

M L Massar1, R Bhagavatula2, M Fickus1, J Kovačević3.   

Abstract

We introduce a rigorous mathematical theory for the analysis of local histograms, and consider the appropriateness of their use in the automated classification of textures commonly encountered in images of H&E stained tissues. We first discuss some of the many image features that pathologists indicate they use when classifying tissues, focusing on simple, locally-defined features that essentially involve pixel counting: the number of cells in a region of given size, the size of the nuclei within these cells, and the distribution of color within both. We then introduce a probabilistic, occlusion-based model for textures that exhibit these features, in particular demonstrating how certain tissue-similar textures can be built up from simpler ones. After considering the basic notions and properties of local histogram transforms, we then formally demonstrate that such transforms are natural tools for analyzing the textures produced by our model. In particular, we discuss how local histogram transforms can be used to produce numerical features that, when fed into mainstream classification schemes, mimic the baser aspects of a pathologist's thought process.

Entities:  

Keywords:  histology; local histogram; occlusion

Year:  2010        PMID: 24839388      PMCID: PMC4022716          DOI: 10.1007/978-3-642-14998-6_89

Source DB:  PubMed          Journal:  Proc South Biomed Eng Conf        ISSN: 1086-4105


  2 in total

1.  Multiresolution histograms and their use for recognition.

Authors:  Efstathios Hadjidemetriou; Michael D Grossberg; Shree K Nayar
Journal:  IEEE Trans Pattern Anal Mach Intell       Date:  2004-07       Impact factor: 6.226

2.  AUTOMATIC IDENTIFICATION AND DELINEATION OF GERM LAYER COMPONENTS IN H&E STAINED IMAGES OF TERATOMAS DERIVED FROM HUMAN AND NONHUMAN PRIMATE EMBRYONIC STEM CELLS.

Authors:  Ramamurthy Bhagavatula; Matthew Fickus; W Kelly; Chenlei Guo; John A Ozolek; Carlos A Castro; Jelena Kovačević
Journal:  Proc IEEE Int Symp Biomed Imaging       Date:  2010-04-14
  2 in total
  2 in total

1.  Local histograms and image occlusion models.

Authors:  Melody L Massar; Ramamurthy Bhagavatula; Matthew Fickus; Jelena Kovačević
Journal:  Appl Comput Harmon Anal       Date:  2012-07-24       Impact factor: 3.055

2.  A domain-knowledge-inspired mathematical framework for the description and classification of H&E stained histopathology images.

Authors:  Melody L Massar; Ramamurthy Bhagavatula; John A Ozolek; Carlos A Castro; Matthew Fickus; Jelena Kovačević
Journal:  Proc SPIE Int Soc Opt Eng       Date:  2011-09-27
  2 in total

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