Literature DB >> 24839351

Robust Feature Selection Technique using Rank Aggregation.

Chandrima Sarkar1, Sarah Cooley2, Jaideep Srivastava1.   

Abstract

Although feature selection is a well-developed research area, there is an ongoing need to develop methods to make classifiers more efficient. One important challenge is the lack of a universal feature selection technique which produces similar outcomes with all types of classifiers. This is because all feature selection techniques have individual statistical biases while classifiers exploit different statistical properties of data for evaluation. In numerous situations this can put researchers into dilemma as to which feature selection method and a classifiers to choose from a vast range of choices. In this paper, we propose a technique that aggregates the consensus properties of various feature selection methods to develop a more optimal solution. The ensemble nature of our technique makes it more robust across various classifiers. In other words, it is stable towards achieving similar and ideally higher classification accuracy across a wide variety of classifiers. We quantify this concept of robustness with a measure known as the Robustness Index (RI). We perform an extensive empirical evaluation of our technique on eight data sets with different dimensions including Arrythmia, Lung Cancer, Madelon, mfeat-fourier, internet-ads, Leukemia-3c and Embryonal Tumor and a real world data set namely Acute Myeloid Leukemia (AML). We demonstrate not only that our algorithm is more robust, but also that compared to other techniques our algorithm improves the classification accuracy by approximately 3-4% (in data set with less than 500 features) and by more than 5% (in data set with more than 500 features), across a wide range of classifiers.

Entities:  

Year:  2014        PMID: 24839351      PMCID: PMC4019401          DOI: 10.1080/08839514.2014.883903

Source DB:  PubMed          Journal:  Appl Artif Intell        ISSN: 0883-9514            Impact factor:   1.580


  4 in total

Review 1.  A review of feature selection techniques in bioinformatics.

Authors:  Yvan Saeys; Iñaki Inza; Pedro Larrañaga
Journal:  Bioinformatics       Date:  2007-08-24       Impact factor: 6.937

2.  Prediction of central nervous system embryonal tumour outcome based on gene expression.

Authors:  Scott L Pomeroy; Pablo Tamayo; Michelle Gaasenbeek; Lisa M Sturla; Michael Angelo; Margaret E McLaughlin; John Y H Kim; Liliana C Goumnerova; Peter M Black; Ching Lau; Jeffrey C Allen; David Zagzag; James M Olson; Tom Curran; Cynthia Wetmore; Jaclyn A Biegel; Tomaso Poggio; Shayan Mukherjee; Ryan Rifkin; Andrea Califano; Gustavo Stolovitzky; David N Louis; Jill P Mesirov; Eric S Lander; Todd R Golub
Journal:  Nature       Date:  2002-01-24       Impact factor: 49.962

3.  Robust biomarker identification for cancer diagnosis with ensemble feature selection methods.

Authors:  Thomas Abeel; Thibault Helleputte; Yves Van de Peer; Pierre Dupont; Yvan Saeys
Journal:  Bioinformatics       Date:  2009-11-25       Impact factor: 6.937

4.  On optimal settings of classification tree ensembles for medical decision support.

Authors:  Mateusz Budnik; Bartosz Krawczyk
Journal:  Health Informatics J       Date:  2013-03       Impact factor: 2.681

  4 in total
  3 in total

1.  Exploring EEG spectral and temporal dynamics underlying a hand grasp movement.

Authors:  Sandeep Bodda; Shyam Diwakar
Journal:  PLoS One       Date:  2022-06-23       Impact factor: 3.752

2.  uEFS: An efficient and comprehensive ensemble-based feature selection methodology to select informative features.

Authors:  Maqbool Ali; Syed Imran Ali; Dohyeong Kim; Taeho Hur; Jaehun Bang; Sungyoung Lee; Byeong Ho Kang; Maqbool Hussain
Journal:  PLoS One       Date:  2018-08-28       Impact factor: 3.240

3.  Recursive ensemble feature selection provides a robust mRNA expression signature for myalgic encephalomyelitis/chronic fatigue syndrome.

Authors:  Paula I Metselaar; Lucero Mendoza-Maldonado; Andrew Yung Fong Li Yim; Ilias Abarkan; Peter Henneman; Anje A Te Velde; Alexander Schönhuth; Jos A Bosch; Aletta D Kraneveld; Alejandro Lopez-Rincon
Journal:  Sci Rep       Date:  2021-02-25       Impact factor: 4.379

  3 in total

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