Literature DB >> 24832337

A divide-conquer-recombine algorithmic paradigm for large spatiotemporal quantum molecular dynamics simulations.

Fuyuki Shimojo1, Shinnosuke Hattori1, Rajiv K Kalia1, Manaschai Kunaseth1, Weiwei Mou1, Aiichiro Nakano1, Ken-ichi Nomura1, Satoshi Ohmura1, Pankaj Rajak1, Kohei Shimamura1, Priya Vashishta1.   

Abstract

We introduce an extension of the divide-and-conquer (DC) algorithmic paradigm called divide-conquer-recombine (DCR) to perform large quantum molecular dynamics (QMD) simulations on massively parallel supercomputers, in which interatomic forces are computed quantum mechanically in the framework of density functional theory (DFT). In DCR, the DC phase constructs globally informed, overlapping local-domain solutions, which in the recombine phase are synthesized into a global solution encompassing large spatiotemporal scales. For the DC phase, we design a lean divide-and-conquer (LDC) DFT algorithm, which significantly reduces the prefactor of the O(N) computational cost for N electrons by applying a density-adaptive boundary condition at the peripheries of the DC domains. Our globally scalable and locally efficient solver is based on a hybrid real-reciprocal space approach that combines: (1) a highly scalable real-space multigrid to represent the global charge density; and (2) a numerically efficient plane-wave basis for local electronic wave functions and charge density within each domain. Hybrid space-band decomposition is used to implement the LDC-DFT algorithm on parallel computers. A benchmark test on an IBM Blue Gene/Q computer exhibits an isogranular parallel efficiency of 0.984 on 786 432 cores for a 50.3 × 10(6)-atom SiC system. As a test of production runs, LDC-DFT-based QMD simulation involving 16 661 atoms is performed on the Blue Gene/Q to study on-demand production of hydrogen gas from water using LiAl alloy particles. As an example of the recombine phase, LDC-DFT electronic structures are used as a basis set to describe global photoexcitation dynamics with nonadiabatic QMD (NAQMD) and kinetic Monte Carlo (KMC) methods. The NAQMD simulations are based on the linear response time-dependent density functional theory to describe electronic excited states and a surface-hopping approach to describe transitions between the excited states. A series of techniques are employed for efficiently calculating the long-range exact exchange correction and excited-state forces. The NAQMD trajectories are analyzed to extract the rates of various excitonic processes, which are then used in KMC simulation to study the dynamics of the global exciton flow network. This has allowed the study of large-scale photoexcitation dynamics in 6400-atom amorphous molecular solid, reaching the experimental time scales.

Entities:  

Year:  2014        PMID: 24832337     DOI: 10.1063/1.4869342

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  4 in total

1.  The nature of free-carrier transport in organometal halide perovskites.

Authors:  Tomoya Hakamata; Kohei Shimamura; Fuyuki Shimojo; Rajiv K Kalia; Aiichiro Nakano; Priya Vashishta
Journal:  Sci Rep       Date:  2016-01-19       Impact factor: 4.379

2.  Ultrafast non-radiative dynamics of atomically thin MoSe2.

Authors:  Ming-Fu Lin; Vidya Kochat; Aravind Krishnamoorthy; Lindsay Bassman; Clemens Weninger; Qiang Zheng; Xiang Zhang; Amey Apte; Chandra Sekhar Tiwary; Xiaozhe Shen; Renkai Li; Rajiv Kalia; Pulickel Ajayan; Aiichiro Nakano; Priya Vashishta; Fuyuki Shimojo; Xijie Wang; David M Fritz; Uwe Bergmann
Journal:  Nat Commun       Date:  2017-11-23       Impact factor: 14.919

3.  Picosecond amorphization of SiO2 stishovite under tension.

Authors:  Masaaki Misawa; Emina Ryuo; Kimiko Yoshida; Rajiv K Kalia; Aiichiro Nakano; Norimasa Nishiyama; Fuyuki Shimojo; Priya Vashishta; Fumihiro Wakai
Journal:  Sci Adv       Date:  2017-05-12       Impact factor: 14.136

4.  Exploring far-from-equilibrium ultrafast polarization control in ferroelectric oxides with excited-state neural network quantum molecular dynamics.

Authors:  Thomas Linker; Ken-Ichi Nomura; Anikeya Aditya; Shogo Fukshima; Rajiv K Kalia; Aravind Krishnamoorthy; Aiichiro Nakano; Pankaj Rajak; Kohei Shimmura; Fuyuki Shimojo; Priya Vashishta
Journal:  Sci Adv       Date:  2022-03-23       Impact factor: 14.136

  4 in total

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