Literature DB >> 24829452

TogoTable: cross-database annotation system using the Resource Description Framework (RDF) data model.

Shin Kawano1, Tsutomu Watanabe2, Sohei Mizuguchi3, Norie Araki3, Toshiaki Katayama4, Atsuko Yamaguchi4.   

Abstract

TogoTable (http://togotable.dbcls.jp/) is a web tool that adds user-specified annotations to a table that a user uploads. Annotations are drawn from several biological databases that use the Resource Description Framework (RDF) data model. TogoTable uses database identifiers (IDs) in the table as a query key for searching. RDF data, which form a network called Linked Open Data (LOD), can be searched from SPARQL endpoints using a SPARQL query language. Because TogoTable uses RDF, it can integrate annotations from not only the reference database to which the IDs originally belong, but also externally linked databases via the LOD network. For example, annotations in the Protein Data Bank can be retrieved using GeneID through links provided by the UniProt RDF. Because RDF has been standardized by the World Wide Web Consortium, any database with annotations based on the RDF data model can be easily incorporated into this tool. We believe that TogoTable is a valuable Web tool, particularly for experimental biologists who need to process huge amounts of data such as high-throughput experimental output.
© The Author(s) 2014. Published by Oxford University Press on behalf of Nucleic Acids Research.

Entities:  

Mesh：

Year:  2014        PMID： 24829452      PMCID： PMC4086138          DOI： 10.1093/nar/gku403

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN： 0305-1048            Impact factor:   16.971


  22 in total

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Journal:  Nucleic Acids Res       Date:  2013-11-21       Impact factor: 16.971

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