Literature DB >> 24828502

Structural basis for reversible phosphorolysis and hydrolysis reactions of 2-O-α-glucosylglycerol phosphorylase.

Kouki K Touhara1, Takanori Nihira2, Motomitsu Kitaoka3, Hiroyuki Nakai2, Shinya Fushinobu4.   

Abstract

2-O-α-Glucosylglycerol phosphorylase (GGP) from Bacillus selenitireducens catalyzes both the reversible phosphorolysis of 2-O-α-glucosylglycerol (GG) and the hydrolysis of β-d-glucose 1-phosphate (βGlc1P). GGP belongs to the glycoside hydrolase (GH) family 65 and can efficiently and specifically produce GG. However, its structural basis has remained unclear. In this study, the crystal structures of GGP complexed with glucose and the glucose analog isofagomine and glycerol were determined. Subsite -1 of GGP is similar to those of other GH65 enzymes, maltose phosphorylase and kojibiose phosphorylase, whereas subsite +1 is largely different and is well designed for GG recognition. An automated docking analysis was performed to complement these crystal structures, βGlc1P being docked at an appropriate position. To investigate the importance of residues at subsite +1 in the bifunctionality of GGP, we constructed mutants at these residues. Y327F and K587A did not show detectable activities for either reverse phosphorolysis or βGlc1P hydrolysis. Y572F also showed significantly reduced activities for both of these reactions. In contrast, W381F showed significantly reduced reverse phosphorolytic activity but retained βGlc1P hydrolysis. The mode of substrate recognition and the reaction mechanisms of GGP were proposed based on these analyses. Specifically, an extensive hydrogen bond network formed by Tyr-327, Tyr-572, Lys-587, and water molecules contributes to fixing the acceptor molecule in both reverse phosphorolysis (glycerol) and βGlc1P hydrolysis (water) for a glycosyl transfer reaction. This study will contribute to the development of a large scale production system of GG by facilitating the rational engineering of GGP.
© 2014 by The American Society for Biochemistry and Molecular Biology, Inc.

Entities:  

Keywords:  Bacillus selenitireducens; Carbohydrate-active Enzymes; Glucosylglycerol; Glycoside Hydrolase; Glycoside Hydrolase Family 65; Molecular Docking; Phosphorylase; Site-directed Mutagenesis; X-ray Crystallography

Mesh:

Substances:

Year:  2014        PMID: 24828502      PMCID: PMC4140298          DOI: 10.1074/jbc.M114.573212

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  30 in total

1.  Automated protein model building combined with iterative structure refinement.

Authors:  A Perrakis; R Morris; V S Lamzin
Journal:  Nat Struct Biol       Date:  1999-05

2.  Phosphorolysis of maltose by enzyme preparations from Neisseria meningitidis.

Authors:  C FITTING; M DOUDOROFF
Journal:  J Biol Chem       Date:  1952-11       Impact factor: 5.157

3.  Refinement of macromolecular structures by the maximum-likelihood method.

Authors:  G N Murshudov; A A Vagin; E J Dodson
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1997-05-01

4.  Gene encoding a trehalose phosphorylase from Thermoanaerobacter brockii ATCC 35047.

Authors:  Kazuhiko Maruta; Kazuhisa Mukai; Hiroshi Yamashita; Michio Kubota; Hiroto Chaen; Shigeharu Fukuda; Masashi Kurimoto
Journal:  Biosci Biotechnol Biochem       Date:  2002-09       Impact factor: 2.043

5.  Identification of alpha-D-glucosylglycerol in sake.

Authors:  F Takenaka; H Uchiyama; T Imamura
Journal:  Biosci Biotechnol Biochem       Date:  2000-02       Impact factor: 2.043

6.  Trehalose-6-phosphate phosphorylase is part of a novel metabolic pathway for trehalose utilization in Lactococcus lactis.

Authors:  U Andersson; F Levander; P Rådström
Journal:  J Biol Chem       Date:  2001-09-11       Impact factor: 5.157

7.  Synthesis of alpha-D-glucosylglycerol by alpha-glucosidase and some of its characteristics.

Authors:  F Takenaka; H Uchiyama
Journal:  Biosci Biotechnol Biochem       Date:  2000-09       Impact factor: 2.043

8.  Acceptor recognition of kojibiose phosphorylase from Thermoanaerobacter brockii: syntheses of glycosyl glycerol and myo-inositol.

Authors:  Takuo Yamamoto; Hikaru Watanabe; Tomoyuki Nishimoto; Hajime Aga; Michio Kubota; Hiroto Chaen; Shigeharu Fukuda
Journal:  J Biosci Bioeng       Date:  2006-05       Impact factor: 2.894

9.  Crystal structure of maltose phosphorylase from Lactobacillus brevis: unexpected evolutionary relationship with glucoamylases.

Authors:  M P Egloff; J Uppenberg; L Haalck; H van Tilbeurgh
Journal:  Structure       Date:  2001-08       Impact factor: 5.006

10.  Cloning and sequencing of kojibiose phosphorylase gene from Thermoanaerobacter brockii ATCC35047.

Authors:  Takuo Yamamoto; Kazuhiko Maruta; Kazuhisa Mukai; Hiroshi Yamashita; Tomoyuki Nishimoto; Michio Kubota; Shigeharu Fukuda; Masashi Kurimoto; Yoshio Tsujisaka
Journal:  J Biosci Bioeng       Date:  2004       Impact factor: 2.894

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Authors:  Shangshang Sun; Chun You
Journal:  Synth Syst Biotechnol       Date:  2021-02-13

2.  Whole cell-based catalyst for enzymatic production of the osmolyte 2-O-α-glucosylglycerol.

Authors:  Katharina N Schwaiger; Monika Cserjan-Puschmann; Gerald Striedner; Bernd Nidetzky
Journal:  Microb Cell Fact       Date:  2021-04-07       Impact factor: 5.328

Review 3.  Discovery and Biotechnological Exploitation of Glycoside-Phosphorylases.

Authors:  Ao Li; Mounir Benkoulouche; Simon Ladeveze; Julien Durand; Gianluca Cioci; Elisabeth Laville; Gabrielle Potocki-Veronese
Journal:  Int J Mol Sci       Date:  2022-03-11       Impact factor: 5.923

  3 in total

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