Literature DB >> 2482751

Intervening sequences exhibit distinct vocabulary.

J S Beckmann1, V Brendel, E N Trifonov.   

Abstract

Little is known about the origin and function of eukaryotic introns. Application of a novel linguistic approach to the analysis of intervening sequences reveals, however, that they exhibit a specific non-random vocabulary whose major feature is the utilization of mirror-symmetrical words ("mirrorrim"). Introns also manifest a significant tendency to avoid local complementarities. Possible biological implications of the corresponding loop regions in the RNA transcripts are discussed.

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Year:  1986        PMID: 2482751     DOI: 10.1080/07391102.1986.10506357

Source DB:  PubMed          Journal:  J Biomol Struct Dyn        ISSN: 0739-1102


  6 in total

1.  WORDUP: an efficient algorithm for discovering statistically significant patterns in DNA sequences.

Authors:  G Pesole; N Prunella; S Liuni; M Attimonelli; C Saccone
Journal:  Nucleic Acids Res       Date:  1992-06-11       Impact factor: 16.971

Review 2.  Computational methods for exon detection.

Authors:  J M Claverie
Journal:  Mol Biotechnol       Date:  1998-08       Impact factor: 2.695

3.  Objective comparison of exon and intron sequences by means of 2-dimensional data analysis methods.

Authors:  L Bougueleret; F Tekaia; I Sauvaget; J M Claverie
Journal:  Nucleic Acids Res       Date:  1988-03-11       Impact factor: 16.971

Review 4.  The multiple codes of nucleotide sequences.

Authors:  E N Trifonov
Journal:  Bull Math Biol       Date:  1989       Impact factor: 1.758

5.  Peptide vocabulary analysis reveals ultra-conservation and homonymity in protein sequences.

Authors:  Derek Gatherer
Journal:  Bioinform Biol Insights       Date:  2009-11-24

6.  The average mutual information profile as a genomic signature.

Authors:  Mark Bauer; Sheldon M Schuster; Khalid Sayood
Journal:  BMC Bioinformatics       Date:  2008-01-25       Impact factor: 3.169

  6 in total

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