Literature DB >> 24826180

5,6-Dimethyl-2-(5-methyl-thio-phen-2-yl)-1-[(5-methyl-thio-phen-2-yl)meth-yl]-1H-benzimidazole.

David K Geiger1, Ava L Isaac1.   

Abstract

The title mol-ecule, C20H20N2S2, is T-shaped and consists of a nearly flat 5,6-dimethyl-2-(5-methyl-thio-phen-2-yl)benzimidazole system approximately perpendicular to the 5-methyl-thio-phen-2-ylmethyl substituent. The 5,6-dimethyl-2-(5-meth-yl-thio-phen-2-yl)benzimidazole system is rotationally disordered about the two imidazole N atoms as approximated by a twofold rotation axis with a refined major/minor occupancy ratio of 0.884 (2):0.116 (2). The benzimidazole ring system is essentially planar, the largest deviations being 0.026 (2) and 0.044 (18) Å in the major and minor components, respectively. The inter-planar angles between the benzimidazole unit and the 5-methyl-thio-phen-2-yl substituent are 10.8 (3) and 8(3)° in the major and minor components, respectively, and the corresponding angles with the 5-methyl-thio-phen-2-ylmethyl substituent are 88.12 (8) and 89.5 (4)°. In the crystal, mol-ecules are oriented with their 2-(5-methyl-thio-phen-2-yl)benzimidazole mean planes approximately parallel to (11[Formula: see text]) and appear to be held together by π-π [2-thiophene⋯imidazole centroid-centroid distance = 4.1383 (7) Å] and C-H⋯π contacts. A weak C-H⋯N hydrogen bond generates infinite chains parallel to [100].

Entities:  

Year:  2014        PMID: 24826180      PMCID: PMC3998620          DOI: 10.1107/S1600536814006333

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the structure of 5,6-di­methyl­benzimidazole, see: Lee & Scheidt (1986 ▶). For the structure of 2-(thio­phen-2-yl)-1-(thio­phen-2-ylmeth­yl)-1H-benzimidazole, see: Geiger et al. (2012 ▶). For the 5-chloro derivative, see: Geiger & Nellist (2013a ▶), the 6-chloro derivative, see: Geiger & Nellist (2013b ▶) and the 6-bromo derivative, see: Geiger & Destefano (2012 ▶). Reich et al. (2004 ▶) provide examples of benzimidazole synthesis via inter­molecular aldimine coupling. For a discussion of the biological activity of benzimidazole derivatives, see: López-Rodríguez et al. (1999 ▶); Horton et al. (2003 ▶).

Experimental

Crystal data

C20H20N2S2 M = 352.50 Triclinic, a = 6.4453 (11) Å b = 10.0228 (18) Å c = 14.249 (3) Å α = 79.171 (5)° β = 83.694 (5)° γ = 83.625 (6)° V = 894.8 (3) Å3 Z = 2 Mo Kα radiation μ = 0.30 mm−1 T = 200 K 0.40 × 0.40 × 0.40 mm

Data collection

Bruker SMART X2S benchtop diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2013 ▶) T min = 0.60, T max = 0.89 10964 measured reflections 3121 independent reflections 2420 reflections with I > 2σ(I) R int = 0.037

Refinement

R[F 2 > 2σ(F 2)] = 0.043 wR(F 2) = 0.123 S = 1.03 3121 reflections 276 parameters 47 restraints H-atom parameters constrained Δρmax = 0.26 e Å−3 Δρmin = −0.30 e Å−3 Data collection: APEX2 (Bruker, 2013 ▶); cell refinement: SAINT (Bruker, 2013 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL2013 (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2009 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536814006333/qk2065sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536814006333/qk2065Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S1600536814006333/qk2065Isup3.mol Click here for additional data file. Supporting information file. DOI: 10.1107/S1600536814006333/qk2065Isup4.cml CCDC reference: 993009 Additional supporting information: crystallographic information; 3D view; checkCIF report
C20H20N2S2Z = 2
Mr = 352.50F(000) = 372
Triclinic, P1Dx = 1.308 Mg m3
a = 6.4453 (11) ÅMo Kα radiation, λ = 0.71073 Å
b = 10.0228 (18) ÅCell parameters from 6329 reflections
c = 14.249 (3) Åθ = 2.3–24.9°
α = 79.171 (5)°µ = 0.30 mm1
β = 83.694 (5)°T = 200 K
γ = 83.625 (6)°Block, yellow
V = 894.8 (3) Å30.40 × 0.40 × 0.40 mm
Bruker SMART X2S benchtop diffractometer3121 independent reflections
Radiation source: XOS X-beam microfocus source2420 reflections with I > 2σ(I)
Doubly curved silicon crystal monochromatorRint = 0.037
ω scansθmax = 25.1°, θmin = 2.8°
Absorption correction: multi-scan (SADABS; Bruker, 2013)h = −7→7
Tmin = 0.60, Tmax = 0.89k = −11→11
10964 measured reflectionsl = −16→15
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.043Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.123H-atom parameters constrained
S = 1.03w = 1/[σ2(Fo2) + (0.0639P)2 + 0.397P] where P = (Fo2 + 2Fc2)/3
3121 reflections(Δ/σ)max < 0.001
276 parametersΔρmax = 0.26 e Å3
47 restraintsΔρmin = −0.30 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
C10.9366 (4)0.2289 (3)0.2305 (2)0.0381 (7)0.884 (2)
C20.7398 (4)0.2498 (3)0.19474 (18)0.0373 (6)0.884 (2)
C30.6040 (8)0.3653 (6)0.2051 (5)0.0429 (12)0.884 (2)
H30.4730.38180.17830.052*0.884 (2)
C40.6713 (5)0.4579 (3)0.2581 (2)0.0449 (8)0.884 (2)
C50.8692 (6)0.4337 (4)0.2962 (3)0.0465 (9)0.884 (2)
C61.0024 (9)0.3197 (8)0.2824 (7)0.0454 (8)0.884 (2)
H61.13530.30330.30750.054*0.884 (2)
C410.5284 (6)0.5834 (4)0.2728 (3)0.0626 (10)0.884 (2)
H41A0.39880.5840.24260.094*0.884 (2)
H41B0.59860.66510.24360.094*0.884 (2)
H41C0.49510.58270.34160.094*0.884 (2)
C510.9359 (6)0.5297 (4)0.3547 (2)0.0683 (10)0.884 (2)
H51A0.8450.52560.41480.102*0.884 (2)
H51B0.92440.6230.31820.102*0.884 (2)
H51C1.08150.50290.3690.102*0.884 (2)
N11.0278 (3)0.1079 (2)0.20560 (15)0.0366 (6)0.884 (2)
C70.8828 (4)0.0601 (3)0.15921 (17)0.0358 (6)0.884 (2)
N20.7102 (5)0.1432 (3)0.1501 (3)0.0376 (7)0.884 (2)
C80.9077 (4)−0.0691 (3)0.1266 (2)0.0384 (7)0.884 (2)
C91.0526 (6)−0.1817 (4)0.1428 (2)0.0522 (12)0.884 (2)
H91.1686−0.18630.17940.063*0.884 (2)
C101.0088 (6)−0.2882 (4)0.0990 (3)0.0586 (11)0.884 (2)
H101.0942−0.37230.10280.07*0.884 (2)
C110.8341 (5)−0.2615 (4)0.0507 (2)0.0492 (8)0.884 (2)
S10.72042 (12)−0.10176 (9)0.05845 (6)0.0447 (3)0.884 (2)
C610.7391 (6)−0.3515 (4)−0.0025 (3)0.0652 (10)0.884 (2)
H61C0.8254−0.3586−0.06270.098*0.884 (2)
H61A0.5973−0.3124−0.01650.098*0.884 (2)
H61B0.7324−0.44250.0370.098*0.884 (2)
C2010.978 (3)−0.058 (2)0.1416 (17)0.0381 (7)0.116 (2)
C2020.775 (3)−0.0185 (17)0.1147 (13)0.0373 (6)0.116 (2)
C2030.653 (4)−0.098 (3)0.073 (2)0.0429 (12)0.116 (2)
H2030.5116−0.07140.05910.052*0.116 (2)
C2040.769 (4)−0.224 (3)0.054 (2)0.0449 (8)0.116 (2)
C2050.980 (4)−0.263 (2)0.072 (2)0.0465 (9)0.116 (2)
C2061.079 (4)−0.178 (3)0.116 (2)0.0454 (8)0.116 (2)
H2061.2211−0.2030.12940.054*0.116 (2)
C2410.655 (5)−0.313 (3)0.005 (3)0.0626 (10)0.116 (2)
H24A0.5239−0.2625−0.01620.094*0.116 (2)
H24B0.6226−0.39580.05060.094*0.116 (2)
H24C0.7437−0.3376−0.05050.094*0.116 (2)
C2511.108 (4)−0.392 (2)0.0553 (19)0.0683 (10)0.116 (2)
H25A1.2486−0.39230.07610.102*0.116 (2)
H25B1.1202−0.3962−0.01310.102*0.116 (2)
H25C1.0405−0.47040.09210.102*0.116 (2)
N2011.034 (2)0.0443 (17)0.1869 (13)0.0366 (6)0.116 (2)
C2070.865 (3)0.1387 (16)0.1827 (13)0.0358 (6)0.116 (2)
N2020.704 (4)0.104 (3)0.147 (3)0.0376 (7)0.116 (2)
C2080.859 (3)0.258 (2)0.2257 (18)0.0384 (7)0.116 (2)
C2090.999 (8)0.305 (7)0.277 (7)0.0522 (12)0.116 (2)
H2091.13390.26090.28930.063*0.116 (2)
C2100.914 (6)0.425 (4)0.309 (4)0.0586 (11)0.116 (2)
H2100.98550.46880.34810.07*0.116 (2)
C2110.724 (5)0.475 (3)0.280 (2)0.0492 (8)0.116 (2)
S2010.644 (2)0.3748 (17)0.2127 (12)0.0447 (3)0.116 (2)
C2610.592 (5)0.606 (3)0.295 (2)0.0652 (10)0.116 (2)
H26A0.44950.58510.32040.098*0.116 (2)
H26B0.58660.66870.23310.098*0.116 (2)
H26C0.65440.64850.340.098*0.116 (2)
C121.2465 (3)0.0569 (3)0.21561 (16)0.0415 (6)
H12A1.33250.13520.20520.05*
H12B1.29560.00140.16550.05*
C131.2791 (3)−0.0285 (2)0.31259 (15)0.0373 (5)
C141.1370 (4)−0.0773 (3)0.38263 (18)0.0579 (8)
H140.9901−0.06310.37770.069*
C151.2288 (4)−0.1530 (3)0.46544 (18)0.0588 (8)
H151.1487−0.19490.5210.071*
C161.4376 (4)−0.1594 (3)0.45742 (16)0.0446 (6)
S21.52848 (9)−0.07226 (7)0.34707 (4)0.0434 (2)
C711.5901 (5)−0.2263 (3)0.52863 (18)0.0596 (8)
H71B1.513−0.25960.59020.089*
H71C1.6838−0.15970.53730.089*
H71A1.673−0.3030.50480.089*
U11U22U33U12U13U23
C10.0329 (16)0.0515 (18)0.0243 (13)−0.0065 (13)−0.0050 (13)0.0103 (12)
C20.0303 (14)0.0493 (16)0.0253 (13)−0.0046 (12)−0.0030 (11)0.0117 (11)
C30.042 (3)0.052 (2)0.034 (2)−0.003 (2)−0.0122 (19)−0.0002 (14)
C40.052 (2)0.0523 (18)0.0265 (17)−0.0064 (15)−0.0026 (12)0.0042 (13)
C50.055 (3)0.0557 (19)0.0268 (19)−0.0138 (19)−0.0042 (16)0.0024 (15)
C60.0436 (16)0.066 (3)0.023 (2)−0.0082 (16)−0.0055 (12)0.0039 (17)
C410.070 (3)0.062 (2)0.055 (2)0.0029 (18)−0.0082 (17)−0.0137 (17)
C510.082 (2)0.077 (2)0.049 (2)−0.0076 (19)−0.0123 (18)−0.0167 (17)
N10.0297 (11)0.0525 (16)0.0247 (12)−0.0061 (11)−0.0048 (9)0.0029 (10)
C70.0302 (13)0.0514 (17)0.0210 (13)−0.0071 (12)−0.0036 (10)0.0081 (11)
N20.0299 (11)0.048 (2)0.0298 (11)−0.0043 (13)−0.0057 (8)0.0071 (17)
C80.0327 (17)0.0553 (17)0.0235 (14)−0.0060 (14)−0.0049 (12)0.0052 (12)
C90.050 (2)0.063 (2)0.041 (3)0.0093 (16)−0.0188 (19)−0.0037 (18)
C100.061 (2)0.061 (2)0.053 (3)0.0119 (17)−0.0163 (17)−0.0114 (18)
C110.055 (2)0.063 (2)0.0258 (14)−0.0114 (15)−0.0017 (17)0.0022 (15)
S10.0416 (5)0.0579 (5)0.0325 (5)−0.0058 (4)−0.0125 (4)0.0036 (3)
C610.084 (3)0.072 (3)0.0420 (19)−0.015 (2)−0.012 (2)−0.0070 (18)
C2010.0329 (16)0.0515 (18)0.0243 (13)−0.0065 (13)−0.0050 (13)0.0103 (12)
C2020.0303 (14)0.0493 (16)0.0253 (13)−0.0046 (12)−0.0030 (11)0.0117 (11)
C2030.042 (3)0.052 (2)0.034 (2)−0.003 (2)−0.0122 (19)−0.0002 (14)
C2040.052 (2)0.0523 (18)0.0265 (17)−0.0064 (15)−0.0026 (12)0.0042 (13)
C2050.055 (3)0.0557 (19)0.0268 (19)−0.0138 (19)−0.0042 (16)0.0024 (15)
C2060.0436 (16)0.066 (3)0.023 (2)−0.0082 (16)−0.0055 (12)0.0039 (17)
C2410.070 (3)0.062 (2)0.055 (2)0.0029 (18)−0.0082 (17)−0.0137 (17)
C2510.082 (2)0.077 (2)0.049 (2)−0.0076 (19)−0.0123 (18)−0.0167 (17)
N2010.0297 (11)0.0525 (16)0.0247 (12)−0.0061 (11)−0.0048 (9)0.0029 (10)
C2070.0302 (13)0.0514 (17)0.0210 (13)−0.0071 (12)−0.0036 (10)0.0081 (11)
N2020.0299 (11)0.048 (2)0.0298 (11)−0.0043 (13)−0.0057 (8)0.0071 (17)
C2080.0327 (17)0.0553 (17)0.0235 (14)−0.0060 (14)−0.0049 (12)0.0052 (12)
C2090.050 (2)0.063 (2)0.041 (3)0.0093 (16)−0.0188 (19)−0.0037 (18)
C2100.061 (2)0.061 (2)0.053 (3)0.0119 (17)−0.0163 (17)−0.0114 (18)
C2110.055 (2)0.063 (2)0.0258 (14)−0.0114 (15)−0.0017 (17)0.0022 (15)
S2010.0416 (5)0.0579 (5)0.0325 (5)−0.0058 (4)−0.0125 (4)0.0036 (3)
C2610.084 (3)0.072 (3)0.0420 (19)−0.015 (2)−0.012 (2)−0.0070 (18)
C120.0289 (12)0.0621 (16)0.0289 (12)−0.0047 (11)−0.0071 (10)0.0067 (11)
C130.0326 (12)0.0502 (14)0.0269 (12)−0.0030 (10)−0.0071 (10)0.0011 (10)
C140.0376 (14)0.091 (2)0.0374 (14)−0.0103 (14)−0.0063 (12)0.0137 (14)
C150.0536 (17)0.083 (2)0.0293 (14)−0.0117 (15)−0.0015 (12)0.0181 (13)
C160.0531 (16)0.0521 (15)0.0250 (12)−0.0016 (12)−0.0086 (11)0.0034 (10)
S20.0351 (4)0.0610 (4)0.0287 (3)−0.0006 (3)−0.0088 (2)0.0068 (3)
C710.0706 (19)0.0691 (19)0.0331 (14)0.0073 (15)−0.0167 (13)0.0052 (13)
C1—N11.379 (4)C204—C2051.413 (17)
C1—C21.399 (4)C204—C2411.515 (18)
C1—C61.400 (5)C205—C2061.390 (19)
C2—N21.382 (4)C205—C2511.500 (18)
C2—C31.392 (7)C206—H2060.95
C3—C41.429 (6)C241—H24A0.98
C3—H30.95C241—H24B0.98
C4—C51.419 (4)C241—H24C0.98
C4—C411.508 (4)C251—H25A0.98
C5—C61.382 (5)C251—H25B0.98
C5—C511.509 (5)C251—H25C0.98
C6—H60.95N201—C2071.357 (15)
C41—H41A0.98N201—C121.498 (15)
C41—H41B0.98C207—N2021.312 (16)
C41—H41C0.98C207—C2081.435 (16)
C51—H51A0.98C208—C2091.393 (19)
C51—H51B0.98C208—S2011.716 (17)
C51—H51C0.98C209—C2101.40 (2)
N1—C71.377 (3)C209—H2090.95
N1—C121.458 (3)C210—C2111.351 (18)
C7—N21.317 (4)C210—H2100.95
C7—C81.443 (4)C211—C2611.516 (18)
C8—C91.384 (4)C211—S2011.666 (17)
C8—S11.723 (3)C261—H26A0.98
C9—C101.402 (5)C261—H26B0.98
C9—H90.95C261—H26C0.98
C10—C111.359 (5)C12—C131.505 (3)
C10—H100.95C12—H12A0.99
C11—C611.498 (4)C12—H12B0.99
C11—S11.703 (4)C13—C141.338 (3)
C61—H61C0.98C13—S21.718 (2)
C61—H61A0.98C14—C151.426 (3)
C61—H61B0.98C14—H140.95
C201—C2061.396 (18)C15—C161.333 (4)
C201—C2021.397 (16)C15—H150.95
C201—N2011.406 (16)C16—C711.504 (3)
C202—N2021.403 (18)C16—S21.724 (2)
C202—C2031.425 (17)C71—H71B0.98
C203—C2041.450 (18)C71—H71C0.98
C203—H2030.95C71—H71A0.98
N1—C1—C2105.5 (2)C206—C205—C251114.9 (18)
N1—C1—C6132.9 (3)C204—C205—C251127.0 (18)
C2—C1—C6121.6 (3)C205—C206—C201122 (2)
N2—C2—C3128.4 (3)C205—C206—H206118.9
N2—C2—C1110.1 (2)C201—C206—H206118.9
C3—C2—C1121.5 (3)C204—C241—H24A109.5
C2—C3—C4116.8 (3)C204—C241—H24B109.5
C2—C3—H3121.6H24A—C241—H24B109.5
C4—C3—H3121.6C204—C241—H24C109.5
C5—C4—C3121.2 (4)H24A—C241—H24C109.5
C5—C4—C41120.0 (3)H24B—C241—H24C109.5
C3—C4—C41118.8 (3)C205—C251—H25A109.5
C6—C5—C4120.5 (3)C205—C251—H25B109.5
C6—C5—C51118.7 (3)H25A—C251—H25B109.5
C4—C5—C51120.8 (3)C205—C251—H25C109.5
C5—C6—C1118.4 (4)H25A—C251—H25C109.5
C5—C6—H6120.8H25B—C251—H25C109.5
C1—C6—H6120.8C207—N201—C201104.4 (13)
C4—C41—H41A109.5C207—N201—C12128.0 (13)
C4—C41—H41B109.5C201—N201—C12126.7 (13)
H41A—C41—H41B109.5N202—C207—N201114.7 (14)
C4—C41—H41C109.5N202—C207—C208123.7 (15)
H41A—C41—H41C109.5N201—C207—C208121.2 (14)
H41B—C41—H41C109.5C207—N202—C202105.3 (15)
C5—C51—H51A109.5C209—C208—C207133.4 (18)
C5—C51—H51B109.5C209—C208—S201108.7 (15)
H51A—C51—H51B109.5C207—C208—S201117.9 (15)
C5—C51—H51C109.5C208—C209—C210111 (2)
H51A—C51—H51C109.5C208—C209—H209124.3
H51B—C51—H51C109.5C210—C209—H209124.3
C7—N1—C1106.5 (2)C211—C210—C209115 (2)
C7—N1—C12128.7 (2)C211—C210—H210122.5
C1—N1—C12124.2 (2)C209—C210—H210122.5
N2—C7—N1112.8 (3)C210—C211—C261130 (2)
N2—C7—C8122.1 (2)C210—C211—S201110.0 (15)
N1—C7—C8125.1 (2)C261—C211—S201120.0 (18)
C7—N2—C2105.1 (2)C211—S201—C20894.6 (11)
C9—C8—C7132.5 (3)C211—C261—H26A109.5
C9—C8—S1109.7 (3)C211—C261—H26B109.5
C7—C8—S1117.7 (2)H26A—C261—H26B109.5
C8—C9—C10112.3 (3)C211—C261—H26C109.5
C8—C9—H9123.8H26A—C261—H26C109.5
C10—C9—H9123.8H26B—C261—H26C109.5
C11—C10—C9114.6 (3)N1—C12—C13112.70 (19)
C11—C10—H10122.7N201—C12—C13110.9 (7)
C9—C10—H10122.7N1—C12—H12A109.1
C10—C11—C61129.0 (3)C13—C12—H12A109.1
C10—C11—S1110.1 (3)N1—C12—H12B109.1
C61—C11—S1120.9 (3)C13—C12—H12B109.1
C11—S1—C893.33 (15)H12A—C12—H12B107.8
C11—C61—H61C109.5C14—C13—C12129.4 (2)
C11—C61—H61A109.5C14—C13—S2110.64 (18)
H61C—C61—H61A109.5C12—C13—S2119.96 (16)
C11—C61—H61B109.5C13—C14—C15113.1 (2)
H61C—C61—H61B109.5C13—C14—H14123.5
H61A—C61—H61B109.5C15—C14—H14123.5
C206—C201—C202117.6 (16)C16—C15—C14113.6 (2)
C206—C201—N201135.0 (17)C16—C15—H15123.2
C202—C201—N201107.3 (13)C14—C15—H15123.2
C201—C202—N202108.0 (13)C15—C16—C71129.8 (2)
C201—C202—C203125.5 (15)C15—C16—S2110.34 (18)
N202—C202—C203126.1 (15)C71—C16—S2119.9 (2)
C202—C203—C204112.3 (17)C13—S2—C1692.37 (11)
C202—C203—H203123.8C16—C71—H71B109.5
C204—C203—H203123.8C16—C71—H71C109.5
C205—C204—C203124.0 (17)H71B—C71—H71C109.5
C205—C204—C241119.6 (17)C16—C71—H71A109.5
C203—C204—C241116.2 (17)H71B—C71—H71A109.5
C206—C205—C204118.0 (17)H71C—C71—H71A109.5
N1—C1—C2—N20.8 (3)C241—C204—C205—C251−5 (5)
C6—C1—C2—N2−177.5 (6)C204—C205—C206—C2010 (5)
N1—C1—C2—C3−178.7 (4)C251—C205—C206—C201−176 (3)
C6—C1—C2—C33.1 (7)C202—C201—C206—C205−5 (5)
N2—C2—C3—C4177.7 (4)N201—C201—C206—C205179 (3)
C1—C2—C3—C4−2.9 (7)C206—C201—N201—C207175 (3)
C2—C3—C4—C51.3 (8)C202—C201—N201—C207−1 (2)
C2—C3—C4—C41−179.0 (4)C206—C201—N201—C126 (5)
C3—C4—C5—C60.3 (9)C202—C201—N201—C12−170.8 (17)
C41—C4—C5—C6−179.4 (7)C201—N201—C207—N2025 (3)
C3—C4—C5—C51−178.0 (4)C12—N201—C207—N202174 (2)
C41—C4—C5—C512.3 (6)C201—N201—C207—C208177 (2)
C4—C5—C6—C1−0.3 (12)C12—N201—C207—C208−13 (3)
C51—C5—C6—C1178.1 (6)N201—C207—N202—C202−6 (4)
N1—C1—C6—C5−179.0 (5)C208—C207—N202—C202−179 (2)
C2—C1—C6—C5−1.4 (12)C201—C202—N202—C2075 (3)
C2—C1—N1—C7−1.6 (3)C203—C202—N202—C207178 (3)
C6—C1—N1—C7176.3 (7)N202—C207—C208—C209171 (7)
C2—C1—N1—C12170.2 (2)N201—C207—C208—C209−1 (8)
C6—C1—N1—C12−11.8 (8)N202—C207—C208—S201−11 (4)
C1—N1—C7—N22.1 (3)N201—C207—C208—S201177.4 (18)
C12—N1—C7—N2−169.3 (3)C207—C208—C209—C210−177 (4)
C1—N1—C7—C8−175.5 (2)S201—C208—C209—C2105 (9)
C12—N1—C7—C813.1 (4)C208—C209—C210—C211−3 (11)
N1—C7—N2—C2−1.6 (4)C209—C210—C211—C261−176 (6)
C8—C7—N2—C2176.1 (3)C209—C210—C211—S2010 (8)
C3—C2—N2—C7179.8 (4)C210—C211—S201—C2083 (4)
C1—C2—N2—C70.5 (4)C261—C211—S201—C208179 (3)
N2—C7—C8—C9−166.6 (4)C209—C208—S201—C211−4 (5)
N1—C7—C8—C910.7 (5)C207—C208—S201—C211177 (2)
N2—C7—C8—S19.6 (4)C7—N1—C12—N201−9.2 (15)
N1—C7—C8—S1−173.04 (19)C1—N1—C12—N201−179.2 (17)
C7—C8—C9—C10177.2 (3)C7—N1—C12—C13−101.5 (3)
S1—C8—C9—C100.8 (4)C1—N1—C12—C1388.5 (3)
C8—C9—C10—C11−0.6 (5)C207—N201—C12—N18.3 (10)
C9—C10—C11—C61−178.8 (4)C201—N201—C12—N1176 (3)
C9—C10—C11—S10.2 (4)C207—N201—C12—C13107.7 (18)
C10—C11—S1—C80.2 (3)C201—N201—C12—C13−85 (2)
C61—C11—S1—C8179.3 (3)N1—C12—C13—C1410.1 (4)
C9—C8—S1—C11−0.6 (3)N201—C12—C13—C14−20.7 (7)
C7—C8—S1—C11−177.6 (2)N1—C12—C13—S2−168.13 (18)
C206—C201—C202—N202−180 (3)N201—C12—C13—S2161.1 (6)
N201—C201—C202—N202−2 (3)C12—C13—C14—C15−179.1 (3)
C206—C201—C202—C2038 (4)S2—C13—C14—C15−0.7 (3)
N201—C201—C202—C203−175 (2)C13—C14—C15—C160.6 (4)
C201—C202—C203—C204−4 (4)C14—C15—C16—C71178.7 (3)
N202—C202—C203—C204−176 (3)C14—C15—C16—S2−0.1 (3)
C202—C203—C204—C205−1 (5)C14—C13—S2—C160.6 (2)
C202—C203—C204—C241−177 (3)C12—C13—S2—C16179.1 (2)
C203—C204—C205—C2064 (5)C15—C16—S2—C13−0.3 (2)
C241—C204—C205—C206180 (3)C71—C16—S2—C13−179.2 (2)
C203—C204—C205—C251179 (3)
D—H···AD—HH···AD···AD—H···A
C12—H12A···N2i0.992.483.195 (4)129
C71—H71B···S201ii0.982.943.912 (17)170
C61—H61B···C3iii0.982.883.793 (8)155
C71—H71B···C4ii0.982.893.815 (4)157
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
C12—H12A⋯N2i 0.992.483.195 (4)129
C61—H61B⋯C3ii 0.982.883.793 (8)155
C71—H71B⋯C4iii 0.982.893.815 (4)157

Symmetry codes: (i) ; (ii) ; (iii) .

  9 in total

Review 1.  The combinatorial synthesis of bicyclic privileged structures or privileged substructures.

Authors:  Douglas A Horton; Gregory T Bourne; Mark L Smythe
Journal:  Chem Rev       Date:  2003-03       Impact factor: 60.622

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Benzimidazole derivatives. 2. Synthesis and structure-activity relationships of new azabicyclic benzimidazole-4-carboxylic acid derivatives with affinity for serotoninergic 5-HT(3) receptors.

Authors:  M L López-Rodríguez; B Benhamú; M J Morcillo; I D Tejada; L Orensanz; M J Alfaro; M I Martín
Journal:  J Med Chem       Date:  1999-12-02       Impact factor: 7.446

4.  Cyanide-catalyzed cyclizations via aldimine coupling.

Authors:  B Jesse E Reich; Aaron K Justice; Brittany T Beckstead; Joseph H Reibenspies; Stephen A Miller
Journal:  J Org Chem       Date:  2004-02-20       Impact factor: 4.354

5.  2-(Thio-phen-2-yl)-1-(thio-phen-2-ylmeth-yl)-1H-benzimidazole.

Authors:  David K Geiger; H Cristina Geiger; Leo Williams; Bruce C Noll
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-01-18

6.  6-Chloro-2-(thio-phen-2-yl)-1-[(thio-phen-2-yl)meth-yl]-1H-benzimidazole.

Authors:  David K Geiger; Michael R Nellist
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-04-30

7.  5-Bromo-2-(thio-phen-2-yl)-1-(thio-phen-2-ylmeth-yl)-1H-benzimidazole.

Authors:  David K Geiger; Matthew R Destefano
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-10-13

8.  5-Chloro-2-(thio-phen-2-yl)-1-(thio-phen-2-ylmeth-yl)-1H-benzimidazole-6-chloro-2-(thiophen-2-yl)-1-(thiophen-2-ylmethyl)-1H-benzimidazole (0.94/0.06).

Authors:  David K Geiger; Michael R Nellist
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-09-12

9.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  9 in total

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