| Literature DB >> 24826179 |
H Cristina Geiger1, James S Donohoe1, David K Geiger1.
Abstract
The title compound, C18H13Br3N2S2, was obtained via the reaction of N-bromo-succinamide with 5,6-dimethyl-2-(thio-phen-2-yl)-1-[(thio-phen-2-yl)meth-yl]-1H-benzimidazole. The compound exhibits rotational disorder of the 5-bromo-thio-phen-2-yl substituent with a refined major:minor occupancy ratio of 0.876 (7):0.124 (7). The 5-bromo-thio-phen-2-yl mean plane is canted to the benzimidazole plane by 20.0 (4) and 21 (4)° in the major and minor components, respectively. In the crystal, weak C-H⋯N inter-actions link the mol-ecules into infinite C(7) chains along the 21 axes.Entities:
Year: 2014 PMID: 24826179 PMCID: PMC3998606 DOI: 10.1107/S160053681400628X
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C18H13Br3N2S2 | |
| Monoclinic, | Mo |
| Hall symbol: -P 2yn | Cell parameters from 4288 reflections |
| θ = 2.5–25.0° | |
| µ = 6.50 mm−1 | |
| β = 98.305 (3)° | Plate, clear colourless |
| 0.60 × 0.40 × 0.10 mm | |
| Bruker SMART X2S benchtop diffractometer | 3561 independent reflections |
| Radiation source: sealed microfocus tube | 2810 reflections with |
| Doubly curved silicon crystal monochromator | |
| Detector resolution: 8.3330 pixels mm-1 | θmax = 25.5°, θmin = 1.9° |
| ω scans | |
| Absorption correction: multi-scan ( | |
| 12301 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 3561 reflections | (Δ/σ)max < 0.001 |
| 247 parameters | Δρmax = 0.87 e Å−3 |
| 16 restraints | Δρmin = −1.90 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| Occ. (<1) | |||||
| C1 | 0.6567 (5) | 0.4489 (7) | 0.0616 (5) | 0.0297 (15) | |
| C2 | 0.5806 (5) | 0.3747 (7) | 0.0935 (5) | 0.0291 (15) | |
| C3 | 0.5164 (5) | 0.2979 (7) | 0.0299 (5) | 0.0328 (16) | |
| C4 | 0.5271 (6) | 0.2972 (7) | −0.0623 (5) | 0.0345 (17) | |
| C5 | 0.6069 (6) | 0.3752 (9) | −0.0909 (5) | 0.0388 (18) | |
| C6 | 0.6698 (6) | 0.4519 (8) | −0.0296 (5) | 0.0341 (16) | |
| H6 | 0.7211 | 0.5058 | −0.0491 | 0.041* | |
| C41 | 0.4614 (7) | 0.2091 (9) | −0.1300 (6) | 0.048 (2) | |
| H41A | 0.4983 | 0.1275 | −0.146 | 0.071* | |
| H41B | 0.4395 | 0.2637 | −0.185 | 0.071* | |
| H41C | 0.4037 | 0.1787 | −0.1029 | 0.071* | |
| C51 | 0.6220 (7) | 0.3744 (12) | −0.1887 (5) | 0.055 (2) | |
| H51A | 0.6732 | 0.442 | −0.1979 | 0.083* | |
| H51B | 0.56 | 0.3992 | −0.2271 | 0.083* | |
| H51C | 0.6426 | 0.2813 | −0.2053 | 0.083* | |
| Br3 | 0.41595 (6) | 0.19379 (9) | 0.07516 (6) | 0.0461 (3) | |
| N1 | 0.7086 (4) | 0.5125 (6) | 0.1385 (4) | 0.0291 (13) | |
| C7 | 0.6621 (5) | 0.4710 (7) | 0.2112 (5) | 0.0282 (15) | |
| N2 | 0.5860 (4) | 0.3888 (6) | 0.1866 (4) | 0.0284 (13) | |
| C8 | 0.6925 (12) | 0.5165 (15) | 0.3059 (6) | 0.0252 (18) | 0.876 (7) |
| C9 | 0.7801 (11) | 0.5660 (14) | 0.3497 (7) | 0.031 (2) | 0.876 (7) |
| H9 | 0.8365 | 0.5803 | 0.3203 | 0.037* | 0.876 (7) |
| C10 | 0.7787 (8) | 0.5937 (9) | 0.4431 (6) | 0.030 (2) | 0.876 (7) |
| H10 | 0.8334 | 0.6288 | 0.4835 | 0.036* | 0.876 (7) |
| C11 | 0.6903 (8) | 0.5643 (9) | 0.4674 (5) | 0.032 (2) | 0.876 (7) |
| S1 | 0.6069 (8) | 0.5018 (9) | 0.3795 (3) | 0.0336 (12) | 0.876 (7) |
| Br1 | 0.65371 (11) | 0.5955 (3) | 0.58337 (8) | 0.0544 (5) | 0.876 (7) |
| C80 | 0.685 (8) | 0.502 (10) | 0.302 (3) | 0.0252 (18) | 0.124 (7) |
| C90 | 0.775 (7) | 0.543 (11) | 0.347 (4) | 0.031 (2) | 0.124 (7) |
| H90 | 0.8304 | 0.5603 | 0.3166 | 0.037* | 0.124 (7) |
| C100 | 0.777 (5) | 0.557 (9) | 0.442 (4) | 0.030 (2) | 0.124 (7) |
| H100 | 0.8338 | 0.5836 | 0.4829 | 0.036* | 0.124 (7) |
| C110 | 0.689 (4) | 0.529 (7) | 0.4662 (19) | 0.032 (2) | 0.124 (7) |
| S10 | 0.602 (6) | 0.480 (8) | 0.377 (2) | 0.0336 (12) | 0.124 (7) |
| Br10 | 0.6580 (9) | 0.530 (2) | 0.5862 (6) | 0.0544 (5) | 0.124 (7) |
| C12 | 0.7869 (5) | 0.6148 (7) | 0.1354 (5) | 0.0312 (16) | |
| H12A | 0.7851 | 0.6824 | 0.1856 | 0.037* | |
| H12B | 0.7734 | 0.6666 | 0.0772 | 0.037* | |
| C13 | 0.8884 (5) | 0.5541 (7) | 0.1435 (4) | 0.0267 (15) | |
| C14 | 0.9740 (6) | 0.6115 (9) | 0.1828 (5) | 0.0399 (18) | |
| H14 | 0.9773 | 0.6971 | 0.2151 | 0.048* | |
| C15 | 1.0593 (6) | 0.5319 (9) | 0.1713 (6) | 0.0426 (19) | |
| H15 | 1.1251 | 0.5573 | 0.195 | 0.051* | |
| C16 | 1.0341 (6) | 0.4152 (8) | 0.1220 (5) | 0.0387 (18) | |
| S2 | 0.90879 (16) | 0.3984 (2) | 0.09103 (14) | 0.0396 (5) | |
| Br2 | 1.11809 (9) | 0.28087 (11) | 0.08705 (7) | 0.0637 (4) |
| C1 | 0.036 (4) | 0.020 (3) | 0.032 (4) | 0.003 (3) | 0.005 (3) | 0.001 (3) |
| C2 | 0.034 (4) | 0.021 (3) | 0.032 (4) | 0.009 (3) | 0.003 (3) | 0.003 (3) |
| C3 | 0.033 (4) | 0.025 (4) | 0.037 (4) | 0.003 (3) | −0.005 (3) | 0.003 (3) |
| C4 | 0.037 (4) | 0.029 (4) | 0.035 (4) | 0.015 (3) | −0.004 (3) | −0.001 (3) |
| C5 | 0.040 (4) | 0.046 (5) | 0.029 (4) | 0.019 (4) | 0.002 (3) | 0.004 (3) |
| C6 | 0.038 (4) | 0.035 (4) | 0.029 (4) | 0.005 (3) | 0.007 (3) | 0.002 (3) |
| C41 | 0.049 (5) | 0.050 (5) | 0.039 (4) | 0.007 (4) | −0.010 (4) | −0.009 (4) |
| C51 | 0.049 (5) | 0.086 (7) | 0.030 (4) | 0.023 (5) | 0.000 (4) | 0.001 (4) |
| Br3 | 0.0447 (5) | 0.0381 (5) | 0.0518 (5) | −0.0119 (4) | −0.0055 (4) | 0.0037 (4) |
| N1 | 0.034 (3) | 0.026 (3) | 0.027 (3) | −0.006 (3) | 0.004 (2) | −0.002 (2) |
| C7 | 0.033 (4) | 0.021 (3) | 0.031 (4) | 0.002 (3) | 0.006 (3) | 0.001 (3) |
| N2 | 0.031 (3) | 0.021 (3) | 0.032 (3) | −0.002 (2) | 0.002 (2) | 0.001 (2) |
| C8 | 0.030 (5) | 0.017 (4) | 0.029 (3) | −0.003 (3) | 0.007 (3) | 0.002 (3) |
| C9 | 0.030 (4) | 0.029 (6) | 0.033 (4) | −0.007 (4) | 0.005 (3) | −0.001 (3) |
| C10 | 0.036 (4) | 0.023 (6) | 0.029 (4) | −0.006 (4) | 0.000 (3) | 0.001 (4) |
| C11 | 0.050 (5) | 0.019 (5) | 0.027 (4) | −0.002 (4) | 0.006 (3) | 0.003 (3) |
| S1 | 0.0328 (17) | 0.038 (4) | 0.0307 (10) | −0.0099 (19) | 0.0077 (9) | −0.0001 (11) |
| Br1 | 0.0781 (7) | 0.0542 (15) | 0.0354 (5) | −0.0216 (8) | 0.0230 (5) | −0.0079 (6) |
| C80 | 0.030 (5) | 0.017 (4) | 0.029 (3) | −0.003 (3) | 0.007 (3) | 0.002 (3) |
| C90 | 0.030 (4) | 0.029 (6) | 0.033 (4) | −0.007 (4) | 0.005 (3) | −0.001 (3) |
| C100 | 0.036 (4) | 0.023 (6) | 0.029 (4) | −0.006 (4) | 0.000 (3) | 0.001 (4) |
| C110 | 0.050 (5) | 0.019 (5) | 0.027 (4) | −0.002 (4) | 0.006 (3) | 0.003 (3) |
| S10 | 0.0328 (17) | 0.038 (4) | 0.0307 (10) | −0.0099 (19) | 0.0077 (9) | −0.0001 (11) |
| Br10 | 0.0781 (7) | 0.0542 (15) | 0.0354 (5) | −0.0216 (8) | 0.0230 (5) | −0.0079 (6) |
| C12 | 0.039 (4) | 0.025 (3) | 0.031 (4) | −0.006 (3) | 0.008 (3) | 0.003 (3) |
| C13 | 0.035 (4) | 0.023 (3) | 0.024 (3) | 0.001 (3) | 0.009 (3) | 0.001 (3) |
| C14 | 0.044 (5) | 0.037 (4) | 0.039 (4) | 0.000 (4) | 0.007 (4) | −0.006 (3) |
| C15 | 0.032 (4) | 0.052 (5) | 0.046 (5) | 0.000 (4) | 0.011 (3) | −0.002 (4) |
| C16 | 0.041 (5) | 0.042 (4) | 0.036 (4) | 0.009 (4) | 0.014 (3) | 0.005 (3) |
| S2 | 0.0445 (11) | 0.0302 (10) | 0.0444 (11) | 0.0010 (9) | 0.0071 (9) | −0.0083 (8) |
| Br2 | 0.0795 (7) | 0.0563 (6) | 0.0619 (6) | 0.0217 (5) | 0.0329 (5) | 0.0114 (5) |
| C1—C6 | 1.389 (10) | C9—C10 | 1.410 (10) |
| C1—N1 | 1.393 (9) | C9—H9 | 0.95 |
| C1—C2 | 1.399 (10) | C10—C11 | 1.341 (11) |
| C2—N2 | 1.376 (9) | C10—H10 | 0.95 |
| C2—C3 | 1.402 (10) | C11—S1 | 1.711 (8) |
| C3—C4 | 1.394 (11) | C11—Br1 | 1.882 (8) |
| C3—Br3 | 1.899 (8) | C80—C90 | 1.36 (2) |
| C4—C5 | 1.439 (12) | C80—S10 | 1.717 (19) |
| C4—C41 | 1.506 (11) | C90—C100 | 1.41 (2) |
| C5—C6 | 1.372 (11) | C90—H90 | 0.95 |
| C5—C51 | 1.492 (11) | C100—C110 | 1.34 (2) |
| C6—H6 | 0.95 | C100—H100 | 0.95 |
| C41—H41A | 0.98 | C110—S10 | 1.710 (19) |
| C41—H41B | 0.98 | C110—Br10 | 1.884 (18) |
| C41—H41C | 0.98 | C12—C13 | 1.494 (10) |
| C51—H51A | 0.98 | C12—H12A | 0.99 |
| C51—H51B | 0.98 | C12—H12B | 0.99 |
| C51—H51C | 0.98 | C13—C14 | 1.349 (11) |
| N1—C7 | 1.387 (9) | C13—S2 | 1.728 (7) |
| N1—C12 | 1.460 (9) | C14—C15 | 1.426 (11) |
| C7—N2 | 1.317 (9) | C14—H14 | 0.95 |
| C7—C80 | 1.37 (5) | C15—C16 | 1.356 (12) |
| C7—C8 | 1.470 (11) | C15—H15 | 0.95 |
| C8—C9 | 1.363 (10) | C16—S2 | 1.717 (8) |
| C8—S1 | 1.717 (7) | C16—Br2 | 1.852 (8) |
| C6—C1—N1 | 131.5 (7) | C8—C9—C10 | 113.4 (7) |
| C6—C1—C2 | 123.1 (7) | C8—C9—H9 | 123.3 |
| N1—C1—C2 | 105.3 (6) | C10—C9—H9 | 123.3 |
| N2—C2—C1 | 110.7 (6) | C11—C10—C9 | 111.3 (7) |
| N2—C2—C3 | 131.5 (7) | C11—C10—H10 | 124.4 |
| C1—C2—C3 | 117.8 (7) | C9—C10—H10 | 124.4 |
| C4—C3—C2 | 121.1 (7) | C10—C11—S1 | 113.5 (6) |
| C4—C3—Br3 | 121.7 (6) | C10—C11—Br1 | 125.5 (6) |
| C2—C3—Br3 | 117.1 (5) | S1—C11—Br1 | 120.9 (5) |
| C3—C4—C5 | 118.5 (7) | C11—S1—C8 | 90.7 (4) |
| C3—C4—C41 | 121.2 (8) | C90—C80—C7 | 127 (6) |
| C5—C4—C41 | 120.2 (7) | C90—C80—S10 | 111.0 (17) |
| C6—C5—C4 | 121.0 (7) | C7—C80—S10 | 122 (6) |
| C6—C5—C51 | 118.9 (8) | C80—C90—C100 | 114 (2) |
| C4—C5—C51 | 120.0 (8) | C80—C90—H90 | 123.2 |
| C5—C6—C1 | 118.4 (7) | C100—C90—H90 | 123.2 |
| C5—C6—H6 | 120.8 | C110—C100—C90 | 111 (2) |
| C1—C6—H6 | 120.8 | C110—C100—H100 | 124.5 |
| C4—C41—H41A | 109.5 | C90—C100—H100 | 124.5 |
| C4—C41—H41B | 109.5 | C100—C110—S10 | 113.7 (16) |
| H41A—C41—H41B | 109.5 | C100—C110—Br10 | 126 (2) |
| C4—C41—H41C | 109.5 | S10—C110—Br10 | 120 (2) |
| H41A—C41—H41C | 109.5 | C110—S10—C80 | 90.7 (13) |
| H41B—C41—H41C | 109.5 | N1—C12—C13 | 114.3 (6) |
| C5—C51—H51A | 109.5 | N1—C12—H12A | 108.7 |
| C5—C51—H51B | 109.5 | C13—C12—H12A | 108.7 |
| H51A—C51—H51B | 109.5 | N1—C12—H12B | 108.7 |
| C5—C51—H51C | 109.5 | C13—C12—H12B | 108.7 |
| H51A—C51—H51C | 109.5 | H12A—C12—H12B | 107.6 |
| H51B—C51—H51C | 109.5 | C14—C13—C12 | 127.9 (7) |
| C7—N1—C1 | 105.8 (6) | C14—C13—S2 | 111.2 (6) |
| C7—N1—C12 | 129.7 (6) | C12—C13—S2 | 120.7 (5) |
| C1—N1—C12 | 124.1 (6) | C13—C14—C15 | 113.8 (7) |
| N2—C7—C80 | 118 (4) | C13—C14—H14 | 123.1 |
| N2—C7—N1 | 113.0 (6) | C15—C14—H14 | 123.1 |
| C80—C7—N1 | 129 (4) | C16—C15—C14 | 111.1 (7) |
| N2—C7—C8 | 123.1 (7) | C16—C15—H15 | 124.5 |
| N1—C7—C8 | 123.9 (7) | C14—C15—H15 | 124.5 |
| C7—N2—C2 | 105.2 (6) | C15—C16—S2 | 112.9 (6) |
| C9—C8—C7 | 131.8 (10) | C15—C16—Br2 | 127.4 (6) |
| C9—C8—S1 | 111.1 (6) | S2—C16—Br2 | 119.7 (5) |
| C7—C8—S1 | 117.1 (8) | C16—S2—C13 | 91.1 (4) |
| H··· | ||||
| C14—H14···N2i | 0.95 | 2.57 | 3.461 (10) | 156 |
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| C14—H14⋯N2i | 0.95 | 2.57 | 3.461 (10) | 156 |
Symmetry code: (i) .