Literature DB >> 24826172

{2-[(2-Hy-droxy-benzyl-idene)amino]-4,5,6,7-tetra-hydro-1-benzo-thio-phen-3-yl}(phen-yl)methanone.

Manpreet Kaur1, Jerry P Jasinski2, Channappa N Kavitha1, H S Yathirajan1, K Byrappa3.   

Abstract

In the title compound, C22H19NO2S, the cyclo-hexene ring adopts a slightly distorted half-chair conformation. The dihedral angles between the mean planes of the thio-phene ring and the phenyl and 2-hy-droxy-phenyl rings are 70.4 (5) and 12.1 (9)°, respectively. The phenyl and 2-hy-droxy-phenyl rings are twisted with respect to one another by 81.0 (6)°. A short intra-molecular O-H⋯N hydrogen bond is observed. In the crystal, weak C-H⋯O inter-actions link the mol-ecules into zigzag chains diagonally along [100] .

Entities:  

Year:  2014        PMID: 24826172      PMCID: PMC3998550          DOI: 10.1107/S1600536814006199

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the importance of thio­phene derivatives, see: Molvi et al. (2007 ▶); Rai et al. (2008 ▶); Asthalatha et al. (2007 ▶). For applications of 2-amino­thio­phene derivatives, see: Sabnis et al. (1999 ▶); Puterová et al. (2010 ▶); Cannito et al. (1990 ▶); Nikolakopoulos et al. (2006 ▶); Lütjens et al. (2005 ▶). For the biological and industrial importance of Schiff bases, see: Desai et al. (2001 ▶); Karia & Parsania (1999 ▶); Samadhiya & Halve (2001 ▶); Singh & Dash (1988 ▶); Aydogan et al. (2001 ▶); Taggi et al. (2002 ▶). For a related structure, see: Kubicki et al. (2012 ▶). For puckering parameters, see Cremer & Pople (1975 ▶). For standard bond lengths, see: Allen et al. (1987 ▶).

Experimental

Crystal data

C22H19NO2S M = 361.44 Monoclinic, a = 9.26395 (15) Å b = 14.2886 (2) Å c = 13.6476 (2) Å β = 96.7581 (15)° V = 1793.97 (5) Å3 Z = 4 Cu Kα radiation μ = 1.73 mm−1 T = 173 K 0.24 × 0.14 × 0.08 mm

Data collection

Agilent Eos Gemini diffractometer Absorption correction: multi-scan (CrysAlis PRO and CrysAlis RED; Agilent, 2012 ▶) T min = 0.658, T max = 1.000 11611 measured reflections 3462 independent reflections 3113 reflections with I > 2σ(I) R int = 0.053

Refinement

R[F 2 > 2σ(F 2)] = 0.049 wR(F 2) = 0.142 S = 1.06 3462 reflections 237 parameters H-atom parameters constrained Δρmax = 1.03 e Å−3 Δρmin = −0.26 e Å−3 Data collection: CrysAlis PRO (Agilent, 2012 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis RED (Agilent, 2012 ▶); program(s) used to solve structure: SUPERFLIP (Palatinus & Chapuis, 2007 ▶); program(s) used to refine structure: SHELXL2012 (Sheldrick, 2008 ▶); molecular graphics: OLEX2 (Dolomanov et al., 2009 ▶); software used to prepare material for publication: OLEX2. Crystal structure: contains datablock(s) I. DOI: 10.1107/S1600536814006199/sj5393sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536814006199/sj5393Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S1600536814006199/sj5393Isup3.cml CCDC reference: 992723 Additional supporting information: crystallographic information; 3D view; checkCIF report
C22H19NO2SF(000) = 760
Mr = 361.44Dx = 1.338 Mg m3
Monoclinic, P21/nCu Kα radiation, λ = 1.54184 Å
a = 9.26395 (15) ÅCell parameters from 5377 reflections
b = 14.2886 (2) Åθ = 4.5–71.3°
c = 13.6476 (2) ŵ = 1.73 mm1
β = 96.7581 (15)°T = 173 K
V = 1793.97 (5) Å3Block, yellow
Z = 40.24 × 0.14 × 0.08 mm
Agilent Eos Gemini diffractometer3462 independent reflections
Radiation source: Enhance (Cu) X-ray Source3113 reflections with I > 2σ(I)
Detector resolution: 16.0416 pixels mm-1Rint = 0.053
ω scansθmax = 71.5°, θmin = 4.5°
Absorption correction: multi-scan (CrysAlis PRO and CrysAlis RED; Agilent, 2012)h = −11→10
Tmin = 0.658, Tmax = 1.000k = −17→17
11611 measured reflectionsl = −16→14
Refinement on F2Hydrogen site location: inferred from neighbouring sites
Least-squares matrix: fullH-atom parameters constrained
R[F2 > 2σ(F2)] = 0.049w = 1/[σ2(Fo2) + (0.0863P)2 + 0.6814P] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.142(Δ/σ)max < 0.001
S = 1.06Δρmax = 1.03 e Å3
3462 reflectionsΔρmin = −0.26 e Å3
237 parametersExtinction correction: SHELXL2012 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
0 restraintsExtinction coefficient: 0.0024 (4)
Primary atom site location: structure-invariant direct methods
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
xyzUiso*/Ueq
S10.55854 (5)0.11521 (3)0.69557 (3)0.02933 (18)
O10.74691 (15)0.17574 (10)0.38642 (9)0.0336 (3)
O20.69355 (16)0.45879 (10)0.56596 (11)0.0364 (4)
H20.69280.40140.56630.055*
N10.61684 (16)0.29064 (11)0.62125 (11)0.0259 (3)
C10.77920 (18)0.19624 (12)0.47290 (13)0.0243 (4)
C20.70603 (18)0.14805 (12)0.55066 (13)0.0248 (4)
C30.70100 (18)0.04840 (12)0.56039 (13)0.0255 (4)
C40.7719 (2)−0.02126 (13)0.49863 (15)0.0312 (4)
H4A0.86410.00340.48320.037*
H4B0.7103−0.03160.43700.037*
C50.7967 (3)−0.11336 (16)0.5535 (2)0.0470 (6)
H5A0.8254−0.16060.50860.056*
H5B0.8757−0.10590.60630.056*
C60.6632 (3)−0.14608 (16)0.5964 (2)0.0502 (6)
H6A0.6840−0.20580.62880.060*
H6B0.5858−0.15600.54300.060*
C70.6102 (2)−0.07799 (14)0.67023 (15)0.0340 (4)
H7A0.5088−0.09020.67670.041*
H7B0.6658−0.08680.73440.041*
C80.62751 (19)0.02115 (12)0.63622 (14)0.0271 (4)
C90.63331 (18)0.19440 (12)0.61848 (13)0.0249 (4)
C100.89550 (18)0.26513 (12)0.50409 (13)0.0243 (4)
C110.9396 (2)0.32721 (14)0.43438 (13)0.0304 (4)
H110.89300.32710.37020.036*
C121.0525 (2)0.38872 (15)0.46073 (15)0.0364 (5)
H121.08060.43070.41450.044*
C131.1242 (2)0.38818 (15)0.55585 (16)0.0369 (5)
H131.20100.42920.57300.044*
C141.0813 (2)0.32637 (16)0.62539 (14)0.0345 (4)
H141.12970.32570.68910.041*
C150.96629 (19)0.26566 (14)0.59984 (13)0.0291 (4)
H150.93640.22520.64680.035*
C160.52973 (19)0.33090 (13)0.67519 (14)0.0272 (4)
H160.47640.29420.71430.033*
C170.51257 (19)0.43151 (13)0.67668 (13)0.0261 (4)
C180.4120 (2)0.47131 (14)0.73438 (14)0.0309 (4)
H180.36030.43290.77280.037*
C190.3894 (2)0.56679 (15)0.73455 (15)0.0359 (5)
H190.32250.59240.77270.043*
C200.4668 (2)0.62451 (14)0.67759 (16)0.0361 (5)
H200.45010.68870.67690.043*
C210.5681 (2)0.58765 (14)0.62214 (16)0.0355 (4)
H210.62050.62710.58520.043*
C220.5925 (2)0.49131 (13)0.62120 (14)0.0281 (4)
U11U22U33U12U13U23
S10.0347 (3)0.0245 (3)0.0310 (3)−0.00448 (16)0.01296 (19)−0.00091 (16)
O10.0390 (7)0.0356 (8)0.0264 (7)−0.0060 (6)0.0048 (5)−0.0032 (5)
O20.0406 (8)0.0252 (7)0.0470 (8)−0.0044 (6)0.0205 (6)−0.0017 (6)
N10.0265 (7)0.0222 (7)0.0295 (8)−0.0025 (6)0.0055 (6)−0.0010 (6)
C10.0241 (8)0.0230 (8)0.0260 (8)0.0024 (6)0.0046 (6)0.0006 (7)
C20.0220 (8)0.0239 (9)0.0284 (9)−0.0022 (7)0.0027 (6)−0.0012 (7)
C30.0225 (8)0.0228 (8)0.0309 (9)−0.0020 (6)0.0017 (7)−0.0018 (7)
C40.0310 (9)0.0273 (9)0.0359 (10)0.0022 (7)0.0063 (7)−0.0044 (8)
C50.0515 (13)0.0336 (12)0.0557 (14)0.0093 (9)0.0060 (11)−0.0040 (9)
C60.0622 (15)0.0241 (10)0.0659 (16)−0.0026 (10)0.0144 (12)−0.0007 (10)
C70.0365 (10)0.0248 (9)0.0407 (11)−0.0068 (8)0.0042 (8)0.0043 (8)
C80.0277 (9)0.0215 (9)0.0322 (9)−0.0019 (7)0.0034 (7)−0.0023 (7)
C90.0251 (8)0.0234 (9)0.0266 (8)−0.0039 (7)0.0047 (6)0.0002 (7)
C100.0230 (8)0.0255 (9)0.0255 (8)0.0007 (7)0.0067 (6)−0.0001 (7)
C110.0321 (9)0.0353 (10)0.0238 (8)−0.0046 (8)0.0041 (7)0.0038 (7)
C120.0396 (11)0.0389 (11)0.0319 (10)−0.0114 (8)0.0097 (8)0.0040 (8)
C130.0311 (10)0.0429 (12)0.0372 (11)−0.0131 (8)0.0064 (8)−0.0058 (8)
C140.0297 (9)0.0467 (12)0.0266 (9)−0.0043 (8)0.0016 (7)−0.0025 (8)
C150.0281 (9)0.0347 (10)0.0253 (9)−0.0013 (7)0.0060 (7)0.0028 (7)
C160.0271 (8)0.0250 (9)0.0303 (9)−0.0034 (7)0.0063 (7)−0.0006 (7)
C170.0246 (8)0.0245 (9)0.0288 (9)−0.0011 (7)0.0008 (7)−0.0033 (7)
C180.0301 (9)0.0309 (10)0.0320 (9)−0.0011 (7)0.0051 (7)−0.0033 (7)
C190.0351 (10)0.0345 (10)0.0381 (10)0.0081 (8)0.0043 (8)−0.0079 (8)
C200.0435 (11)0.0239 (9)0.0393 (11)0.0051 (8)−0.0021 (8)−0.0044 (8)
C210.0428 (11)0.0259 (10)0.0378 (10)−0.0047 (8)0.0047 (8)0.0006 (8)
C220.0287 (9)0.0255 (9)0.0300 (9)−0.0029 (7)0.0027 (7)−0.0036 (7)
S1—C81.7299 (18)C7—C81.505 (3)
S1—C91.7432 (18)C10—C111.397 (3)
O1—C11.219 (2)C10—C151.392 (3)
O2—H20.8200C11—H110.9300
O2—C221.351 (2)C11—C121.381 (3)
N1—C91.385 (2)C12—H120.9300
N1—C161.290 (2)C12—C131.387 (3)
C1—C21.493 (2)C13—H130.9300
C1—C101.484 (2)C13—C141.388 (3)
C2—C31.431 (2)C14—H140.9300
C2—C91.377 (2)C14—C151.386 (3)
C3—C41.504 (2)C15—H150.9300
C3—C81.361 (3)C16—H160.9300
C4—H4A0.9700C16—C171.447 (3)
C4—H4B0.9700C17—C181.409 (3)
C4—C51.518 (3)C17—C221.409 (3)
C5—H5A0.9700C18—H180.9300
C5—H5B0.9700C18—C191.380 (3)
C5—C61.504 (4)C19—H190.9300
C6—H6A0.9700C19—C201.390 (3)
C6—H6B0.9700C20—H200.9300
C6—C71.523 (3)C20—C211.378 (3)
C7—H7A0.9700C21—H210.9300
C7—H7B0.9700C21—C221.395 (3)
C8—S1—C991.53 (9)C2—C9—N1124.08 (16)
C22—O2—H2109.5C11—C10—C1119.12 (16)
C16—N1—C9122.47 (15)C15—C10—C1121.26 (16)
O1—C1—C2119.82 (16)C15—C10—C11119.53 (17)
O1—C1—C10121.62 (16)C10—C11—H11120.0
C10—C1—C2118.49 (15)C12—C11—C10120.01 (18)
C3—C2—C1123.18 (15)C12—C11—H11120.0
C9—C2—C1123.70 (16)C11—C12—H12119.8
C9—C2—C3113.09 (16)C11—C12—C13120.33 (18)
C2—C3—C4125.81 (16)C13—C12—H12119.8
C8—C3—C2112.33 (16)C12—C13—H13120.0
C8—C3—C4121.83 (17)C12—C13—C14119.94 (18)
C3—C4—H4A109.6C14—C13—H13120.0
C3—C4—H4B109.6C13—C14—H14120.0
C3—C4—C5110.36 (17)C15—C14—C13119.98 (18)
H4A—C4—H4B108.1C15—C14—H14120.0
C5—C4—H4A109.6C10—C15—H15119.9
C5—C4—H4B109.6C14—C15—C10120.19 (17)
C4—C5—H5A109.2C14—C15—H15119.9
C4—C5—H5B109.2N1—C16—H16119.1
H5A—C5—H5B107.9N1—C16—C17121.89 (16)
C6—C5—C4112.2 (2)C17—C16—H16119.1
C6—C5—H5A109.2C18—C17—C16119.34 (17)
C6—C5—H5B109.2C22—C17—C16121.99 (16)
C5—C6—H6A108.8C22—C17—C18118.67 (17)
C5—C6—H6B108.8C17—C18—H18119.7
C5—C6—C7113.75 (19)C19—C18—C17120.70 (18)
H6A—C6—H6B107.7C19—C18—H18119.7
C7—C6—H6A108.8C18—C19—H19120.1
C7—C6—H6B108.8C18—C19—C20119.81 (18)
C6—C7—H7A109.6C20—C19—H19120.1
C6—C7—H7B109.6C19—C20—H20119.7
H7A—C7—H7B108.2C21—C20—C19120.70 (18)
C8—C7—C6110.05 (17)C21—C20—H20119.7
C8—C7—H7A109.6C20—C21—H21119.9
C8—C7—H7B109.6C20—C21—C22120.24 (19)
C3—C8—S1112.29 (14)C22—C21—H21119.9
C3—C8—C7125.78 (17)O2—C22—C17122.26 (17)
C7—C8—S1121.89 (14)O2—C22—C21117.89 (17)
N1—C9—S1125.12 (13)C21—C22—C17119.85 (18)
C2—C9—S1110.74 (13)
O1—C1—C2—C353.9 (2)C8—C3—C4—C5−20.5 (3)
O1—C1—C2—C9−124.32 (19)C9—S1—C8—C3−1.22 (14)
O1—C1—C10—C1118.8 (3)C9—S1—C8—C7176.49 (16)
O1—C1—C10—C15−157.73 (17)C9—N1—C16—C17−179.41 (16)
N1—C16—C17—C18177.77 (17)C9—C2—C3—C4−178.91 (16)
N1—C16—C17—C22−1.6 (3)C9—C2—C3—C8−1.2 (2)
C1—C2—C3—C42.7 (3)C10—C1—C2—C3−123.18 (18)
C1—C2—C3—C8−179.58 (16)C10—C1—C2—C958.6 (2)
C1—C2—C9—S1178.63 (13)C10—C11—C12—C131.1 (3)
C1—C2—C9—N11.4 (3)C11—C10—C15—C14−1.0 (3)
C1—C10—C11—C12−176.81 (18)C11—C12—C13—C14−0.8 (3)
C1—C10—C15—C14175.54 (17)C12—C13—C14—C15−0.4 (3)
C2—C1—C10—C11−164.18 (16)C13—C14—C15—C101.3 (3)
C2—C1—C10—C1519.2 (2)C15—C10—C11—C12−0.2 (3)
C2—C3—C4—C5156.98 (18)C16—N1—C9—S1−7.9 (3)
C2—C3—C8—S11.60 (19)C16—N1—C9—C2168.92 (17)
C2—C3—C8—C7−176.01 (17)C16—C17—C18—C19−177.65 (17)
C3—C2—C9—S10.30 (19)C16—C17—C22—O2−2.3 (3)
C3—C2—C9—N1−176.90 (16)C16—C17—C22—C21177.57 (17)
C3—C4—C5—C648.4 (3)C17—C18—C19—C20−0.3 (3)
C4—C3—C8—S1179.39 (13)C18—C17—C22—O2178.33 (17)
C4—C3—C8—C71.8 (3)C18—C17—C22—C21−1.8 (3)
C4—C5—C6—C7−60.2 (3)C18—C19—C20—C21−1.2 (3)
C5—C6—C7—C838.5 (3)C19—C20—C21—C221.1 (3)
C6—C7—C8—S1172.38 (16)C20—C21—C22—O2−179.69 (18)
C6—C7—C8—C3−10.2 (3)C20—C21—C22—C170.4 (3)
C8—S1—C9—N1177.66 (16)C22—C17—C18—C191.7 (3)
C8—S1—C9—C20.50 (14)
D—H···AD—HH···AD···AD—H···A
O2—H2···N10.821.922.641 (2)146
C18—H18···O1i0.932.513.436 (2)174
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O2—H2⋯N10.821.922.641 (2)146
C18—H18⋯O1i 0.932.513.436 (2)174

Symmetry code: (i) .

  6 in total

1.  Synthesis of some new bioactive 3-amino-2-mercapto-5,6,7,8-tetrahydro[1]benzothieno[2,3-d]pyrimidin-4(3H)-one derivatives.

Authors:  B V Ashalatha; B Narayana; K K Vijaya Raj; N Suchetha Kumari
Journal:  Eur J Med Chem       Date:  2006-11-29       Impact factor: 6.514

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  The development of the first catalyzed reaction of ketenes and imines: catalytic, asymmetric synthesis of beta-lactams.

Authors:  Andrew E Taggi; Ahmed M Hafez; Harald Wack; Brandon Young; Dana Ferraris; Thomas Lectka
Journal:  J Am Chem Soc       Date:  2002-06-12       Impact factor: 15.419

4.  Syntheses of new tetrasubstituted thiophenes as novel anti-inflammatory agents.

Authors:  Khurshid I Molvi; Kamala K Vasu; Swapnil G Yerande; Vasudevan Sudarsanam; Navedul Haque
Journal:  Eur J Med Chem       Date:  2007-01-24       Impact factor: 6.514

5.  2-Aminothiophene-3-carboxylates and carboxamides as adenosine A1 receptor allosteric enhancers.

Authors:  George Nikolakopoulos; Heidi Figler; Joel Linden; Peter J Scammells
Journal:  Bioorg Med Chem       Date:  2005-11-28       Impact factor: 3.641

6.  Convenient access to 1,3,4-trisubstituted pyrazoles carrying 5-nitrothiophene moiety via 1,3-dipolar cycloaddition of sydnones with acetylenic ketones and their antimicrobial evaluation.

Authors:  N Satheesha Rai; Balakrishna Kalluraya; B Lingappa; Shaliny Shenoy; Vedavati G Puranic
Journal:  Eur J Med Chem       Date:  2007-08-30       Impact factor: 6.514

  6 in total
  2 in total

1.  Crystal structure of 3-benzoyl-2-[(5-bromo-2-hydroxy-3-meth-oxy-benzyl-idene)amino]-4,5,6,7-tetra-hydro-benzo[b]thio-phene.

Authors:  Manpreet Kaur; Jerry P Jasinski; H S Yathirajan; Christopher Glidewell; K Byrappa
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2015-01-17

2.  {2-[(4-Nitro-benzyl-idene)amino]-4,5,6,7-tetrahydro-1-benzo-thio-phen-3-yl}(phen-yl)methanone.

Authors:  Manpreet Kaur; Jerry P Jasinski; Channappa N Kavitha; H S Yathirajan; K Byrappa
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-05-31
  2 in total

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