Literature DB >> 24826150

2-[4-(Piperidin-1-yl)-5H-chromeno[2,3-d]pyrimidin-2-yl]phenol.

Naresh Sharma1, Goutam Brahmachari2, Suvankar Das2, Rajni Kant1, Vivek K Gupta1.   

Abstract

In the title compound, C22H21N3O2, the pyrimidine ring is essentially planar [maximum deviation = 0.018 (2) Å] and forms dihedral angles of 22.70 (8) and 0.97 (7)°, respectively, with the fused benzene ring and the hy-droxy-substituted benzene ring. The piperidine ring has a chair conformation and the pyran ring has a flattened twist-boat conformation. The hy-droxy group was refined as disordered over two sets of sites in a 0.702 (4):0.298 (4) ratio. The disorder corresponds to a rotation of approxomiately 180° about the C-C bond connecting the phenol group to the pyrimidine ring and hence, both the major and minor components of disorder form intra-molecular O-H⋯N hydrogen bonds. In the crystal, pairs of weak C-H⋯π inter-actions form inversion dimers. In addition, π-π inter-actions are observed between the pyrimidine ring and the hy-droxy-substituted benzene ring [centroid-centroid separation = 3.739 (2) Å].

Entities:  

Year:  2014        PMID: 24826150      PMCID: PMC3998607          DOI: 10.1107/S1600536814005625

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For applications of benzo­pyrano[2,3-d]pyrimidines, see: Hadfield et al. (1999 ▶); Bruno et al. (2001 ▶, 2004 ▶). For general background to benzo­pyrano[2,3-d]pyrimidines, see: Brahmachari & Das (2014 ▶). For a related structure, see: Gajera et al. (2013 ▶). For standard bond-length data, see: Allen et al. (1987 ▶). For conformational analysis, see: Duax & Norton (1975 ▶).

Experimental

Crystal data

C22H21N3O2 M = 359.42 Monoclinic, a = 9.9826 (5) Å b = 15.8773 (7) Å c = 12.2197 (6) Å β = 109.381 (6)° V = 1827.03 (15) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 293 K 0.30 × 0.20 × 0.20 mm

Data collection

Oxford Diffraction Xcalibur Sapphire3 diffractometer Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2010 ▶) T min = 0.975, T max = 0.983 13349 measured reflections 3576 independent reflections 1918 reflections with I > 2σ(I) R int = 0.048

Refinement

R[F 2 > 2σ(F 2)] = 0.060 wR(F 2) = 0.133 S = 1.03 3576 reflections 254 parameters 12 restraints H-atom parameters constrained Δρmax = 0.13 e Å−3 Δρmin = −0.16 e Å−3 Data collection: CrysAlis PRO (Oxford Diffraction, 2010 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: PLATON. Crystal structure: contains datablock(s) I, New_Global_Publ_Block. DOI: 10.1107/S1600536814005625/lh5695sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536814005625/lh5695Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S1600536814005625/lh5695Isup3.cml CCDC reference: 975917 Additional supporting information: crystallographic information; 3D view; checkCIF report
C22H21N3O2F(000) = 760
Mr = 359.42Dx = 1.307 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 4022 reflections
a = 9.9826 (5) Åθ = 3.4–29.1°
b = 15.8773 (7) ŵ = 0.09 mm1
c = 12.2197 (6) ÅT = 293 K
β = 109.381 (6)°Block, colourless
V = 1827.03 (15) Å30.30 × 0.20 × 0.20 mm
Z = 4
Oxford Diffraction Xcalibur Sapphire3 diffractometer3576 independent reflections
Radiation source: fine-focus sealed tube1918 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.048
Detector resolution: 16.1049 pixels mm-1θmax = 26.0°, θmin = 3.4°
ω scansh = −12→10
Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2010)k = −19→19
Tmin = 0.975, Tmax = 0.983l = −15→15
13349 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.060Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.133H-atom parameters constrained
S = 1.03w = 1/[σ2(Fo2) + (0.0481P)2 + 0.0647P] where P = (Fo2 + 2Fc2)/3
3576 reflections(Δ/σ)max < 0.001
254 parametersΔρmax = 0.13 e Å3
12 restraintsΔρmin = −0.16 e Å3
Experimental. CrysAlis PRO, Agilent Technologies, Version 1.171.36.28 (release 01–02-2013 CrysAlis171. NET) (compiled Feb 1 2013,16:14:44) Empirical absorption correction using spherical harmonics, implemented in SCALE3 ABSPACK scaling algorithm.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
C20.1453 (2)0.07319 (14)0.0435 (2)0.0477 (6)
C40.3129 (2)−0.03037 (14)0.1148 (2)0.0463 (6)
C50.3928 (2)−0.06426 (14)0.33523 (19)0.0507 (6)
H5A0.3894−0.12350.31520.061*
H5B0.4916−0.04690.36220.061*
C60.3630 (3)−0.10672 (16)0.5247 (2)0.0647 (8)
H60.4218−0.15270.52800.078*
C70.3085 (3)−0.09410 (19)0.6134 (2)0.0742 (9)
H70.3312−0.13120.67580.089*
C80.2209 (3)−0.0268 (2)0.6095 (3)0.0756 (9)
H80.1837−0.01850.66910.091*
C90.1882 (3)0.02815 (18)0.5177 (2)0.0658 (8)
H90.12960.07420.51470.079*
C110.3132 (2)−0.01433 (14)0.2289 (2)0.0443 (6)
C120.3321 (3)−0.05240 (15)0.4307 (2)0.0499 (6)
C130.2437 (3)0.01392 (16)0.4299 (2)0.0522 (7)
C140.2228 (3)0.04870 (15)0.2367 (2)0.0483 (6)
C160.3602 (3)−0.11949 (17)−0.0314 (2)0.0693 (8)
H16A0.4132−0.0854−0.06880.083*
H16B0.2598−0.1115−0.07300.083*
C170.3982 (3)−0.21068 (17)−0.0359 (2)0.0731 (9)
H17A0.3828−0.2264−0.11590.088*
H17B0.3360−0.2449−0.00780.088*
C180.5505 (3)−0.22899 (19)0.0357 (3)0.0843 (10)
H18A0.6137−0.20190.00090.101*
H18B0.5674−0.28920.03740.101*
C190.5809 (3)−0.19662 (19)0.1583 (2)0.0783 (9)
H19A0.5263−0.22880.19630.094*
H19B0.6808−0.20400.20200.094*
C200.5425 (3)−0.10490 (16)0.1567 (2)0.0618 (7)
H20A0.5606−0.08530.23550.074*
H20B0.6010−0.07230.12290.074*
C210.0531 (2)0.12112 (13)−0.0572 (2)0.0488 (6)
C220.0519 (3)0.10222 (18)−0.1690 (2)0.0599 (7)
H220.10790.0582−0.17940.072*0.702 (4)
O27A0.1226 (5)0.0461 (3)−0.1909 (5)0.076 (3)0.298 (4)
H27A0.16720.0216−0.13080.114*0.298 (4)
C23−0.0300 (3)0.14697 (19)−0.2643 (3)0.0711 (8)
H23−0.02770.1340−0.33790.085*
C24−0.1140 (3)0.2101 (2)−0.2497 (3)0.0745 (9)
H24−0.16940.2404−0.31400.089*
C25−0.1190 (3)0.23027 (16)−0.1420 (3)0.0728 (9)
H25−0.17870.2729−0.13360.087*
C26−0.0337 (3)0.18620 (15)−0.0448 (3)0.0604 (7)
H26−0.03500.20060.02860.072*0.298 (4)
O27B−0.0379 (3)0.21092 (14)0.0561 (2)0.0703 (11)0.702 (4)
H27B0.02500.18720.10790.105*0.702 (4)
N10.1407 (2)0.09492 (12)0.14824 (18)0.0522 (5)
N30.2261 (2)0.01277 (12)0.02367 (17)0.0499 (5)
N150.3930 (2)−0.09248 (12)0.08946 (17)0.0536 (6)
O100.20328 (18)0.07135 (10)0.33851 (15)0.0621 (5)
U11U22U33U12U13U23
C20.0481 (15)0.0410 (14)0.0520 (16)−0.0057 (12)0.0137 (12)−0.0011 (12)
C40.0432 (14)0.0424 (14)0.0499 (15)−0.0060 (12)0.0107 (12)−0.0062 (12)
C50.0486 (15)0.0474 (15)0.0501 (16)0.0009 (12)0.0083 (12)−0.0074 (12)
C60.0749 (19)0.0566 (18)0.0548 (18)−0.0014 (14)0.0110 (15)−0.0021 (15)
C70.095 (2)0.071 (2)0.0508 (18)−0.0174 (19)0.0165 (16)0.0041 (15)
C80.082 (2)0.093 (2)0.055 (2)−0.0225 (19)0.0271 (17)−0.0147 (18)
C90.0647 (19)0.073 (2)0.0583 (19)−0.0039 (15)0.0189 (15)−0.0157 (16)
C110.0454 (14)0.0373 (13)0.0461 (15)−0.0035 (11)0.0099 (12)−0.0056 (11)
C120.0515 (15)0.0461 (15)0.0446 (15)−0.0074 (13)0.0061 (12)−0.0082 (12)
C130.0559 (16)0.0523 (16)0.0424 (15)−0.0050 (13)0.0082 (13)−0.0069 (13)
C140.0527 (15)0.0434 (14)0.0469 (15)−0.0046 (12)0.0139 (12)−0.0095 (12)
C160.080 (2)0.0724 (19)0.0500 (17)0.0152 (16)0.0138 (14)−0.0087 (14)
C170.084 (2)0.0658 (19)0.0637 (19)0.0169 (16)0.0171 (16)−0.0174 (15)
C180.085 (2)0.080 (2)0.081 (2)0.0266 (18)0.0185 (18)−0.0180 (17)
C190.0648 (19)0.087 (2)0.072 (2)0.0243 (17)0.0071 (15)−0.0029 (17)
C200.0479 (16)0.075 (2)0.0596 (17)−0.0004 (14)0.0144 (13)−0.0148 (14)
C210.0495 (15)0.0381 (14)0.0547 (16)−0.0058 (12)0.0117 (12)0.0047 (12)
C220.0549 (17)0.0660 (19)0.0544 (18)−0.0102 (15)0.0121 (14)0.0054 (15)
O27A0.057 (4)0.109 (6)0.061 (4)0.019 (4)0.017 (3)0.009 (4)
C230.0653 (19)0.079 (2)0.0622 (19)−0.0111 (17)0.0115 (15)0.0125 (17)
C240.070 (2)0.070 (2)0.069 (2)−0.0155 (17)0.0042 (16)0.0223 (17)
C250.0633 (19)0.0512 (18)0.092 (2)0.0057 (14)0.0092 (17)0.0127 (17)
C260.0659 (18)0.0452 (16)0.0648 (19)−0.0019 (14)0.0146 (15)0.0029 (14)
O27B0.083 (2)0.0662 (18)0.061 (2)0.0287 (14)0.0220 (14)0.0006 (14)
N10.0570 (13)0.0442 (12)0.0518 (13)0.0029 (10)0.0132 (10)−0.0018 (10)
N30.0503 (12)0.0461 (12)0.0507 (13)0.0030 (10)0.0132 (10)−0.0030 (10)
N150.0529 (13)0.0540 (13)0.0486 (13)0.0093 (10)0.0097 (10)−0.0106 (10)
O100.0786 (13)0.0545 (11)0.0527 (11)0.0138 (9)0.0208 (9)−0.0054 (9)
C2—N31.326 (3)C17—C181.509 (4)
C2—N11.341 (3)C17—H17A0.9700
C2—C211.479 (3)C17—H17B0.9700
C4—N31.349 (3)C18—C191.517 (3)
C4—N151.368 (3)C18—H18A0.9700
C4—C111.416 (3)C18—H18B0.9700
C5—C121.495 (3)C19—C201.504 (3)
C5—C111.504 (3)C19—H19A0.9700
C5—H5A0.9700C19—H19B0.9700
C5—H5B0.9700C20—N151.458 (3)
C6—C71.379 (4)C20—H20A0.9700
C6—C121.387 (3)C20—H20B0.9700
C6—H60.9300C21—C261.388 (3)
C7—C81.371 (4)C21—C221.395 (3)
C7—H70.9300C22—O27A1.220 (5)
C8—C91.373 (4)C22—C231.378 (3)
C8—H80.9300C22—H220.9300
C9—C131.379 (3)O27A—H27A0.8200
C9—H90.9300C23—C241.357 (4)
C11—C141.372 (3)C23—H230.9300
C12—C131.371 (3)C24—C251.371 (4)
C13—O101.394 (3)C24—H240.9300
C14—N11.338 (3)C25—C261.397 (4)
C14—O101.370 (3)C25—H250.9300
C16—N151.467 (3)C26—O27B1.309 (3)
C16—C171.503 (3)C26—H260.9300
C16—H16A0.9700O27B—H27B0.8200
C16—H16B0.9700
N3—C2—N1125.1 (2)C17—C18—C19109.9 (2)
N3—C2—C21118.0 (2)C17—C18—H18A109.7
N1—C2—C21116.9 (2)C19—C18—H18A109.7
N3—C4—N15116.3 (2)C17—C18—H18B109.7
N3—C4—C11120.8 (2)C19—C18—H18B109.7
N15—C4—C11122.8 (2)H18A—C18—H18B108.2
C12—C5—C11111.9 (2)C20—C19—C18110.4 (2)
C12—C5—H5A109.2C20—C19—H19A109.6
C11—C5—H5A109.2C18—C19—H19A109.6
C12—C5—H5B109.2C20—C19—H19B109.6
C11—C5—H5B109.2C18—C19—H19B109.6
H5A—C5—H5B107.9H19A—C19—H19B108.1
C7—C6—C12121.5 (3)N15—C20—C19110.3 (2)
C7—C6—H6119.2N15—C20—H20A109.6
C12—C6—H6119.2C19—C20—H20A109.6
C8—C7—C6120.0 (3)N15—C20—H20B109.6
C8—C7—H7120.0C19—C20—H20B109.6
C6—C7—H7120.0H20A—C20—H20B108.1
C7—C8—C9120.0 (3)C26—C21—C22117.6 (2)
C7—C8—H8120.0C26—C21—C2122.1 (2)
C9—C8—H8120.0C22—C21—C2120.3 (2)
C8—C9—C13118.9 (3)O27A—C22—C23114.5 (4)
C8—C9—H9120.5O27A—C22—C21123.7 (4)
C13—C9—H9120.5C23—C22—C21121.8 (3)
C14—C11—C4114.4 (2)C23—C22—H22119.1
C14—C11—C5119.7 (2)C21—C22—H22119.1
C4—C11—C5125.7 (2)C22—O27A—H27A109.5
C13—C12—C6116.7 (2)C24—C23—C22119.3 (3)
C13—C12—C5121.2 (2)C24—C23—H23120.4
C6—C12—C5122.1 (2)C22—C23—H23120.4
C12—C13—C9122.9 (3)C23—C24—C25121.3 (3)
C12—C13—O10121.5 (2)C23—C24—H24119.3
C9—C13—O10115.6 (2)C25—C24—H24119.3
N1—C14—O10110.9 (2)C24—C25—C26119.5 (3)
N1—C14—C11125.8 (2)C24—C25—H25120.2
O10—C14—C11123.3 (2)C26—C25—H25120.2
N15—C16—C17110.1 (2)O27B—C26—C21122.8 (3)
N15—C16—H16A109.6O27B—C26—C25116.7 (3)
C17—C16—H16A109.6C21—C26—C25120.5 (3)
N15—C16—H16B109.6C21—C26—H26119.8
C17—C16—H16B109.6C25—C26—H26119.8
H16A—C16—H16B108.2C26—O27B—H27B109.5
C16—C17—C18112.5 (2)C14—N1—C2115.1 (2)
C16—C17—H17A109.1C2—N3—C4118.7 (2)
C18—C17—H17A109.1C4—N15—C20122.37 (19)
C16—C17—H17B109.1C4—N15—C16119.1 (2)
C18—C17—H17B109.1C20—N15—C16111.89 (19)
H17A—C17—H17B107.8C14—O10—C13117.75 (19)
C12—C6—C7—C80.4 (4)C26—C21—C22—C231.1 (2)
C6—C7—C8—C9−0.4 (4)C2—C21—C22—C23−178.3 (2)
C7—C8—C9—C130.6 (4)O27A—C22—C23—C24179.2 (2)
N3—C4—C11—C14−1.7 (3)C21—C22—C23—C24−1.3 (3)
N15—C4—C11—C14−178.1 (2)C22—C23—C24—C250.0 (4)
N3—C4—C11—C5173.0 (2)C23—C24—C25—C261.4 (4)
N15—C4—C11—C5−3.4 (4)C22—C21—C26—O27B−177.9 (2)
C12—C5—C11—C1415.2 (3)C2—C21—C26—O27B1.5 (3)
C12—C5—C11—C4−159.2 (2)C22—C21—C26—C250.3 (3)
C7—C6—C12—C13−0.6 (4)C2—C21—C26—C25179.8 (2)
C7—C6—C12—C5178.7 (2)C24—C25—C26—O27B176.8 (2)
C11—C5—C12—C13−17.3 (3)C24—C25—C26—C21−1.5 (4)
C11—C5—C12—C6163.5 (2)O10—C14—N1—C2−175.57 (18)
C6—C12—C13—C90.8 (4)C11—C14—N1—C23.3 (3)
C5—C12—C13—C9−178.4 (2)N3—C2—N1—C14−2.0 (3)
C6—C12—C13—O10−178.6 (2)C21—C2—N1—C14178.36 (19)
C5—C12—C13—O102.1 (3)N1—C2—N3—C4−0.9 (3)
C8—C9—C13—C12−0.8 (4)C21—C2—N3—C4178.68 (18)
C8—C9—C13—O10178.7 (2)N15—C4—N3—C2179.44 (19)
C4—C11—C14—N1−1.5 (3)C11—C4—N3—C22.9 (3)
C5—C11—C14—N1−176.5 (2)N3—C4—N15—C20137.0 (2)
C4—C11—C14—O10177.2 (2)C11—C4—N15—C20−46.5 (3)
C5—C11—C14—O102.2 (3)N3—C4—N15—C16−12.1 (3)
N15—C16—C17—C18−54.4 (3)C11—C4—N15—C16164.4 (2)
C16—C17—C18—C1953.0 (3)C19—C20—N15—C4148.4 (2)
C17—C18—C19—C20−54.2 (3)C19—C20—N15—C16−60.5 (3)
C18—C19—C20—N1558.2 (3)C17—C16—N15—C4−149.8 (2)
N3—C2—C21—C26−179.10 (19)C17—C16—N15—C2058.0 (3)
N1—C2—C21—C260.6 (3)N1—C14—O10—C13160.0 (2)
N3—C2—C21—C220.4 (3)C11—C14—O10—C13−18.9 (3)
N1—C2—C21—C22−179.98 (17)C12—C13—O10—C1416.6 (3)
C26—C21—C22—O27A−179.45 (14)C9—C13—O10—C14−162.9 (2)
C2—C21—C22—O27A1.1 (2)
D—H···AD—HH···AD···AD—H···A
O27A—H27A···N30.821.782.535 (3)151
O27B—H27B···N10.821.832.551 (3)146
C5—H5B···Cgi0.972.673.59159
Table 1

Hydrogen-bond geometry (Å, °)

Cg is the centroid of the C6–C9/C12/C13 ring.

D—H⋯A D—HH⋯A DA D—H⋯A
O27A—H27A⋯N30.821.782.535 (3)151
O27B—H27B⋯N10.821.832.551 (3)146
C5—H5BCg i 0.972.673.59159

Symmetry code: (i) .

  6 in total

1.  Synthesis and pharmacological evaluation of 2,5-cycloamino-5H-[1]benzopyrano[4,3-d]pyrimidines endowed with in vitro antiplatelet activity.

Authors:  O Bruno; C Brullo; A Ranise; S Schenone; F Bondavalli; E Barocelli; V Ballabeni; M Chiavarini; M Tognolini; M Impicciatore
Journal:  Bioorg Med Chem Lett       Date:  2001-06-04       Impact factor: 2.823

2.  Synthesis and pharmacological evaluation of 5H-[1]benzopyrano[4,3-d]pyrimidines effective as antiplatelet/analgesic agents.

Authors:  Olga Bruno; Chiara Brullo; Silvia Schenone; Francesco Bondavalli; Angelo Ranise; Massimiliano Tognolini; Vigilio Ballabeni; Elisabetta Barocelli
Journal:  Bioorg Med Chem       Date:  2004-02-01       Impact factor: 3.641

3.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

4.  Synthesis and anticancer activities of 4-oxobenzopyrano[2,3-d]pyrimidines.

Authors:  J A Hadfield; V H Pavlidis; P J Perry; A T McGown
Journal:  Anticancer Drugs       Date:  1999-07       Impact factor: 2.248

5.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20

6.  tert-Butyl 4-{[2-amino-4-(2-hy-droxy-phen-yl)pyrimidin-5-yl]meth-yl}piperazine-1-carboxyl-ate.

Authors:  Nilesh N Gajera; Mukesh C Patel; Mukesh M Jotani; Edward R T Tiekink
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-09-21
  6 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.