Literature DB >> 24826142

Methyl 2-((2Z,5Z)-4-oxo-3-phenyl-2-{2-[(1E)-1,2,3,4-tetra-hydro-naphthalen-1-yl-idene]hydrazin-1-yl-idene}-1,3-thia-zolidin-5-yl-idene)acetate.

Joel T Mague1, Mehmet Akkurt2, Shaaban K Mohamed3, Alaa A Hassan4, Mustafa R Albayati5.   

Abstract

In the title compound, C22H19N3O3S, the six-membered ring of the 1,2,3,4-tetra-hydro-naphthalene ring system adopts an envelope conformation with the central CH2 C atom as the flap. The mol-ecular conformation is stabilized by an S⋯O contact, forming a pseudo-five-membered ring. In the crystal, mol-ecules are linked via C-H⋯O hydrogen bonds into chains propagating along [102].

Entities:  

Year:  2014        PMID: 24826142      PMCID: PMC3998598          DOI: 10.1107/S1600536814005285

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis of thia­zolidinediones, see: Patel et al. (2010 ▶); Aneja et al. (2011 ▶). For pharmacological properties of thia­zolidinedione-containing compounds, see: Gillies & Dunn (2000 ▶); Lenhard & Funk (2001 ▶); Edelman (2003 ▶); Desmet et al. (2005 ▶). For ring conformation, see: Cremer & Pople (1975 ▶). For the synthesis of the title compound, see: Mague et al. (2014 ▶).

Experimental

Crystal data

C22H19N3O3S M = 405.47 Triclinic, a = 9.7078 (6) Å b = 9.7134 (6) Å c = 11.1061 (7) Å α = 67.9810 (9)° β = 88.8400 (9)° γ = 85.9840 (9)° V = 968.47 (10) Å3 Z = 2 Mo Kα radiation μ = 0.20 mm−1 T = 150 K 0.28 × 0.16 × 0.09 mm

Data collection

Bruker SMART APEX CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2013 ▶) T min = 0.83, T max = 0.98 17735 measured reflections 4994 independent reflections 4325 reflections with I > 2σ(I) R int = 0.036

Refinement

R[F 2 > 2σ(F 2)] = 0.040 wR(F 2) = 0.104 S = 1.05 4994 reflections 263 parameters H-atom parameters constrained Δρmax = 0.39 e Å−3 Δρmin = −0.30 e Å−3 Data collection: APEX2 (Bruker, 2013 ▶); cell refinement: SAINT (Bruker, 2013 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL2013 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶); software used to prepare material for publication: WinGX (Farrugia, 2012 ▶) and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536814005285/bt6966sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536814005285/bt6966Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S1600536814005285/bt6966Isup3.cml CCDC reference: 990619 Additional supporting information: crystallographic information; 3D view; checkCIF report
C22H19N3O3SZ = 2
Mr = 405.47F(000) = 424
Triclinic, P1Dx = 1.390 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 9.7078 (6) ÅCell parameters from 9980 reflections
b = 9.7134 (6) Åθ = 2.3–29.2°
c = 11.1061 (7) ŵ = 0.20 mm1
α = 67.9810 (9)°T = 150 K
β = 88.8400 (9)°Thick plate, orange
γ = 85.9840 (9)°0.28 × 0.16 × 0.09 mm
V = 968.47 (10) Å3
Bruker SMART APEX CCD diffractometer4994 independent reflections
Radiation source: fine-focus sealed tube4325 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.036
Detector resolution: 8.3660 pixels mm-1θmax = 29.2°, θmin = 2.0°
φ and ω scansh = −13→13
Absorption correction: multi-scan (SADABS; Bruker, 2013)k = −13→13
Tmin = 0.83, Tmax = 0.98l = −14→15
17735 measured reflections
Refinement on F20 restraints
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.040H-atom parameters constrained
wR(F2) = 0.104w = 1/[σ2(Fo2) + (0.0495P)2 + 0.3384P] where P = (Fo2 + 2Fc2)/3
S = 1.05(Δ/σ)max = 0.001
4994 reflectionsΔρmax = 0.39 e Å3
263 parametersΔρmin = −0.30 e Å3
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement on F2 for ALL reflections except those flagged by the user for potential systematic errors. Weighted R-factors wR and all goodnesses of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The observed criterion of F2 > σ(F2) is used only for calculating -R-factor-obs etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.52540 (3)0.95022 (3)0.67094 (3)0.0188 (1)
O10.76785 (10)0.63932 (11)0.62875 (11)0.0310 (3)
O20.66788 (9)1.19374 (10)0.53017 (10)0.0249 (3)
O30.88571 (9)1.18392 (10)0.45791 (10)0.0255 (3)
N10.56204 (10)0.66168 (12)0.72779 (11)0.0189 (3)
N20.34944 (11)0.73712 (12)0.79413 (11)0.0200 (3)
N30.27229 (11)0.87024 (12)0.78071 (11)0.0209 (3)
C10.67901 (13)0.71539 (14)0.65725 (13)0.0208 (3)
C20.67731 (12)0.88043 (14)0.62092 (13)0.0192 (3)
C30.46688 (12)0.76959 (14)0.74001 (12)0.0178 (3)
C40.52709 (12)0.50951 (14)0.76333 (13)0.0185 (3)
C50.46558 (14)0.47045 (15)0.67052 (13)0.0237 (3)
C60.42866 (15)0.32512 (16)0.70419 (15)0.0286 (4)
C70.45075 (15)0.22246 (15)0.82939 (15)0.0274 (4)
C80.51370 (15)0.26328 (15)0.92091 (14)0.0267 (4)
C90.55316 (14)0.40784 (15)0.88794 (13)0.0234 (4)
C100.15034 (12)0.85321 (14)0.83051 (12)0.0188 (3)
C110.09413 (14)0.70582 (15)0.90877 (14)0.0251 (4)
C12−0.06198 (15)0.71071 (17)0.89171 (16)0.0333 (5)
C13−0.13270 (15)0.83434 (19)0.92826 (16)0.0363 (5)
C14−0.07537 (14)0.98191 (17)0.85397 (14)0.0271 (4)
C15−0.15709 (16)1.1146 (2)0.82824 (16)0.0369 (5)
C16−0.10746 (18)1.25107 (19)0.75859 (17)0.0400 (5)
C170.02647 (18)1.25928 (18)0.71144 (17)0.0379 (5)
C180.10916 (15)1.12992 (16)0.73521 (15)0.0289 (4)
C190.06062 (13)0.99048 (15)0.80716 (13)0.0216 (3)
C200.78083 (13)0.96017 (14)0.55569 (13)0.0219 (4)
C210.77041 (13)1.12321 (14)0.51469 (13)0.0210 (3)
C220.88037 (15)1.34487 (15)0.40941 (15)0.0282 (4)
H50.448800.541800.585200.0280*
H60.388100.296100.641000.0340*
H70.422800.124000.852700.0330*
H80.529900.192201.006400.0320*
H90.597200.436100.949900.0280*
H11A0.116200.679201.001700.0300*
H11B0.139000.627900.881100.0300*
H12A−0.084000.728300.800300.0400*
H12B−0.096700.613900.947400.0400*
H13A−0.232900.841200.910300.0440*
H13B−0.120300.809701.022500.0440*
H15−0.249101.110200.859600.0440*
H16−0.164801.339500.742800.0480*
H170.061101.353200.663100.0450*
H180.200501.135800.702100.0350*
H200.861200.911300.535800.0260*
H22A0.848701.379100.478400.0420*
H22B0.816101.385800.335600.0420*
H22C0.972601.378600.381400.0420*
U11U22U33U12U13U23
S10.0177 (2)0.0149 (2)0.0232 (2)0.0008 (1)0.0016 (1)−0.0071 (1)
O10.0221 (5)0.0214 (5)0.0509 (7)−0.0001 (4)0.0105 (4)−0.0159 (5)
O20.0224 (4)0.0198 (5)0.0310 (5)0.0003 (4)0.0032 (4)−0.0081 (4)
O30.0204 (4)0.0180 (5)0.0359 (6)−0.0037 (4)0.0039 (4)−0.0075 (4)
N10.0172 (5)0.0147 (5)0.0251 (5)0.0007 (4)0.0011 (4)−0.0082 (4)
N20.0197 (5)0.0161 (5)0.0242 (6)0.0011 (4)0.0011 (4)−0.0080 (4)
N30.0198 (5)0.0170 (5)0.0258 (6)0.0012 (4)0.0021 (4)−0.0086 (4)
C10.0174 (5)0.0184 (6)0.0269 (7)−0.0008 (5)0.0006 (5)−0.0090 (5)
C20.0173 (5)0.0175 (6)0.0232 (6)0.0013 (4)−0.0009 (4)−0.0085 (5)
C30.0190 (5)0.0153 (5)0.0189 (6)0.0019 (4)−0.0021 (4)−0.0067 (5)
C40.0158 (5)0.0145 (6)0.0255 (6)0.0007 (4)0.0032 (4)−0.0082 (5)
C50.0269 (6)0.0208 (6)0.0230 (6)−0.0017 (5)0.0002 (5)−0.0079 (5)
C60.0331 (7)0.0254 (7)0.0317 (8)−0.0063 (6)0.0014 (6)−0.0150 (6)
C70.0312 (7)0.0177 (6)0.0351 (8)−0.0037 (5)0.0070 (6)−0.0118 (6)
C80.0310 (7)0.0187 (6)0.0268 (7)0.0020 (5)0.0032 (5)−0.0051 (5)
C90.0238 (6)0.0210 (6)0.0255 (7)0.0015 (5)−0.0009 (5)−0.0093 (5)
C100.0196 (6)0.0175 (6)0.0202 (6)−0.0001 (5)0.0006 (4)−0.0084 (5)
C110.0232 (6)0.0197 (6)0.0282 (7)−0.0013 (5)0.0050 (5)−0.0046 (5)
C120.0234 (7)0.0295 (8)0.0400 (9)−0.0071 (6)0.0032 (6)−0.0042 (6)
C130.0218 (7)0.0440 (9)0.0346 (8)0.0017 (6)0.0088 (6)−0.0061 (7)
C140.0227 (6)0.0355 (8)0.0237 (7)0.0064 (6)−0.0008 (5)−0.0132 (6)
C150.0289 (7)0.0483 (10)0.0359 (8)0.0159 (7)−0.0031 (6)−0.0216 (8)
C160.0446 (9)0.0360 (9)0.0442 (10)0.0217 (7)−0.0139 (7)−0.0239 (8)
C170.0476 (9)0.0214 (7)0.0460 (10)0.0071 (7)−0.0107 (7)−0.0153 (7)
C180.0293 (7)0.0211 (7)0.0382 (8)0.0016 (5)−0.0029 (6)−0.0137 (6)
C190.0213 (6)0.0216 (6)0.0243 (6)0.0035 (5)−0.0020 (5)−0.0120 (5)
C200.0185 (6)0.0193 (6)0.0276 (7)0.0005 (5)0.0003 (5)−0.0088 (5)
C210.0202 (6)0.0193 (6)0.0226 (6)−0.0026 (5)−0.0001 (5)−0.0066 (5)
C220.0257 (6)0.0179 (6)0.0379 (8)−0.0050 (5)0.0038 (6)−0.0066 (6)
S1—C21.7470 (13)C14—C191.4054 (19)
S1—C31.7614 (14)C15—C161.376 (3)
O1—C11.2104 (17)C16—C171.388 (2)
O2—C211.2147 (16)C17—C181.383 (2)
O3—C211.3354 (16)C18—C191.399 (2)
O3—C221.4475 (19)C20—C211.471 (2)
N1—C11.3841 (17)C5—H50.9500
N1—C31.3916 (18)C6—H60.9500
N1—C41.4433 (19)C7—H70.9500
N2—N31.4069 (17)C8—H80.9500
N2—C31.2810 (16)C9—H90.9500
N3—C101.2912 (16)C11—H11A0.9900
C1—C21.498 (2)C11—H11B0.9900
C2—C201.3392 (18)C12—H12A0.9900
C4—C51.383 (2)C12—H12B0.9900
C4—C91.3817 (19)C13—H13A0.9900
C5—C61.390 (2)C13—H13B0.9900
C6—C71.384 (2)C15—H150.9500
C7—C81.388 (2)C16—H160.9500
C8—C91.392 (2)C17—H170.9500
C10—C111.503 (2)C18—H180.9500
C10—C191.480 (2)C20—H200.9500
C11—C121.526 (2)C22—H22A0.9800
C12—C131.522 (3)C22—H22B0.9800
C13—C141.501 (2)C22—H22C0.9800
C14—C151.401 (3)
C2—S1—C390.54 (6)O3—C21—C20112.24 (11)
C21—O3—C22115.22 (11)C4—C5—H5121.00
C1—N1—C3115.28 (12)C6—C5—H5121.00
C1—N1—C4122.38 (11)C5—C6—H6120.00
C3—N1—C4121.19 (10)C7—C6—H6120.00
N3—N2—C3108.54 (11)C6—C7—H7120.00
N2—N3—C10114.88 (12)C8—C7—H7120.00
O1—C1—N1124.49 (13)C7—C8—H8120.00
O1—C1—C2125.72 (12)C9—C8—H8120.00
N1—C1—C2109.78 (11)C4—C9—H9121.00
S1—C2—C1111.61 (9)C8—C9—H9121.00
S1—C2—C20126.19 (12)C10—C11—H11A109.00
C1—C2—C20122.19 (12)C10—C11—H11B109.00
S1—C3—N1112.60 (9)C12—C11—H11A109.00
S1—C3—N2125.31 (11)C12—C11—H11B109.00
N1—C3—N2122.08 (13)H11A—C11—H11B108.00
N1—C4—C5118.25 (12)C11—C12—H12A110.00
N1—C4—C9119.99 (12)C11—C12—H12B110.00
C5—C4—C9121.75 (13)C13—C12—H12A110.00
C4—C5—C6118.88 (13)C13—C12—H12B110.00
C5—C6—C7120.30 (14)H12A—C12—H12B108.00
C6—C7—C8120.01 (14)C12—C13—H13A109.00
C7—C8—C9120.27 (13)C12—C13—H13B109.00
C4—C9—C8118.76 (13)C14—C13—H13A109.00
N3—C10—C11124.91 (13)C14—C13—H13B109.00
N3—C10—C19116.60 (12)H13A—C13—H13B108.00
C11—C10—C19118.49 (11)C14—C15—H15119.00
C10—C11—C12111.39 (12)C16—C15—H15119.00
C11—C12—C13110.22 (13)C15—C16—H16120.00
C12—C13—C14111.71 (13)C17—C16—H16120.00
C13—C14—C15120.61 (13)C16—C17—H17120.00
C13—C14—C19120.99 (14)C18—C17—H17120.00
C15—C14—C19118.40 (15)C17—C18—H18119.00
C14—C15—C16121.64 (15)C19—C18—H18119.00
C15—C16—C17119.89 (17)C2—C20—H20120.00
C16—C17—C18119.62 (17)C21—C20—H20120.00
C17—C18—C19121.12 (14)O3—C22—H22A109.00
C10—C19—C14120.36 (13)O3—C22—H22B109.00
C10—C19—C18120.29 (12)O3—C22—H22C109.00
C14—C19—C18119.32 (14)H22A—C22—H22B109.00
C2—C20—C21120.19 (12)H22A—C22—H22C109.00
O2—C21—O3124.27 (13)H22B—C22—H22C110.00
O2—C21—C20123.49 (12)
C3—S1—C2—C11.03 (10)C9—C4—C5—C60.3 (2)
C3—S1—C2—C20179.69 (13)N1—C4—C9—C8177.63 (12)
C2—S1—C3—N11.64 (10)C5—C4—C9—C8−1.3 (2)
C2—S1—C3—N2−177.12 (12)C4—C5—C6—C71.3 (2)
C22—O3—C21—O2−2.31 (19)C5—C6—C7—C8−1.9 (2)
C22—O3—C21—C20177.15 (11)C6—C7—C8—C90.9 (2)
C3—N1—C1—O1−174.48 (13)C7—C8—C9—C40.7 (2)
C3—N1—C1—C24.83 (15)N3—C10—C11—C12−149.23 (14)
C4—N1—C1—O1−6.7 (2)C19—C10—C11—C1230.49 (17)
C4—N1—C1—C2172.65 (11)N3—C10—C19—C14177.77 (13)
C1—N1—C3—S1−4.18 (14)N3—C10—C19—C18−0.49 (19)
C1—N1—C3—N2174.63 (12)C11—C10—C19—C14−1.97 (19)
C4—N1—C3—S1−172.16 (9)C11—C10—C19—C18179.77 (13)
C4—N1—C3—N26.65 (19)C10—C11—C12—C13−56.61 (16)
C1—N1—C4—C5−79.47 (16)C11—C12—C13—C1454.64 (17)
C1—N1—C4—C9101.58 (15)C12—C13—C14—C15152.42 (15)
C3—N1—C4—C587.64 (16)C12—C13—C14—C19−26.8 (2)
C3—N1—C4—C9−91.31 (15)C13—C14—C15—C16−178.97 (16)
C3—N2—N3—C10179.44 (11)C19—C14—C15—C160.2 (2)
N3—N2—C3—S14.12 (16)C13—C14—C19—C100.0 (2)
N3—N2—C3—N1−174.53 (11)C13—C14—C19—C18178.25 (14)
N2—N3—C10—C115.64 (19)C15—C14—C19—C10−179.24 (13)
N2—N3—C10—C19−174.09 (11)C15—C14—C19—C18−1.0 (2)
O1—C1—C2—S1175.85 (12)C14—C15—C16—C170.3 (3)
O1—C1—C2—C20−2.9 (2)C15—C16—C17—C18−0.2 (3)
N1—C1—C2—S1−3.45 (14)C16—C17—C18—C19−0.6 (3)
N1—C1—C2—C20177.83 (12)C17—C18—C19—C10179.44 (14)
S1—C2—C20—C21−2.6 (2)C17—C18—C19—C141.2 (2)
C1—C2—C20—C21175.97 (12)C2—C20—C21—O2−4.3 (2)
N1—C4—C5—C6−178.63 (12)C2—C20—C21—O3176.24 (12)
D—H···AD—HH···AD···AD—H···A
C5—H5···O2i0.952.593.3704 (18)140
C11—H11B···N20.992.382.7466 (18)101
C20—H20···O3ii0.952.563.4591 (16)159
C22—H22C···O1ii0.982.523.4397 (18)157
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
C5—H5⋯O2i 0.952.593.3704 (18)140
C11—H11B⋯N20.992.382.7466 (18)101
C20—H20⋯O3ii 0.952.563.4591 (16)159
C22—H22C⋯O1ii 0.982.523.4397 (18)157

Symmetry codes: (i) ; (ii) .

  8 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Failure to develop hepatic injury from rosiglitazone in a patient with a history of troglitazone-induced hepatitis.

Authors:  M J Lenhard; W B Funk
Journal:  Diabetes Care       Date:  2001-01       Impact factor: 19.112

Review 3.  Pioglitazone.

Authors:  P S Gillies; C J Dunn
Journal:  Drugs       Date:  2000-08       Impact factor: 9.546

4.  Pro-inflammatory properties for thiazolidinediones.

Authors:  Christophe Desmet; Barbara Warzée; Philippe Gosset; Dorothée Mélotte; Anthony Rongvaux; Laurent Gillet; Laurence Fiévez; Grégory Seumois; Alain Vanderplasschen; Bart Staels; Pierre Lekeux; Fabrice Bureau
Journal:  Biochem Pharmacol       Date:  2004-11-13       Impact factor: 5.858

Review 5.  The role of the thiazolidinediones in the practical management of patients with type 2 diabetes and cardiovascular risk factors.

Authors:  Steven V Edelman
Journal:  Rev Cardiovasc Med       Date:  2003       Impact factor: 2.930

6.  Synthesis of new pyrazolyl-2, 4-thiazolidinediones as antibacterial and antifungal agents.

Authors:  Deepak K Aneja; Poonam Lohan; Sanjiv Arora; Chetan Sharma; Kamal R Aneja; Om Prakash
Journal:  Org Med Chem Lett       Date:  2011-11-08

7.  Methyl (2Z)-2-{(2Z)-3-[(cyclo-pentyl-idene)amino]-4-oxo-2-phenyl-imino-1,3-thia-zol-idin-5-yl-idene}acetate.

Authors:  Joel T Mague; Mehmet Akkurt; Shaaban K Mohamed; Alaa A Hassan; Mustafa R Albayati
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-02-26

8.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
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1.  Crystal structure of dimethyl 2-((2Z,5Z)-5-(2-meth-oxy-2-oxo-ethyl-idene)-2-{(E)-[2-methyl-5-(prop-1-en-2-yl)cyclo-hex-2-enyl-idene]hydrazinyl-idene}-4-oxo-thia-zolidin-3-yl)fumarate.

Authors:  Abdellah N'ait Ousidi; My Youssef Ait Itto; Aziz Auhmani; Abdelkhalek Riahi; Abdelwahed Auhmani; Jean-Claude Daran
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2017-01-31
  1 in total

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