Literature DB >> 24826124

Trichodermaerin: a diterpene lactone from Trichoderma asperellum.

Suchada Chantrapromma1, Chotika Jeerapong2, Worrapong Phupong2, Ching Kheng Quah3, Hoong-Kun Fun3.   

Abstract

The title compound, C20H28O3, known as 'trichodermaerin' [systematic name: (4E)-4,9,15,16,16-penta-methyl-6-oxa-tetra-cyclo-[10.3.1.0(1,10).0(5,9)]hexa-dec-4-ene-7,13-dione], is a diterpene lactone which was isolated from Trichoderma asperellum. The structure has a tetra-cycic 6-5-7-5 ring system, with the cyclo-hexa-none ring adopting a twisted half-chair conformation and the cyclo-pentane ring adopting a half-chair conformation, whereas the cyclo-heptene and tetra-hydro-furan-anone rings are in chair and envelope (with the methyl-substituted C atom as the flap) conformations, respectively. The three-dimensional architecture is stabilized by C-H⋯O inter-actions.

Entities:  

Year:  2014        PMID: 24826124      PMCID: PMC3998585          DOI: 10.1107/S1600536814004632

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For standard bond-length data, see: Allen et al. (1987 ▶). For ring conformations, see: Cremer & Pople (1975 ▶). For background to Trichoderma and diterpene lactones, see, for example: De los Santos-Villalobos et al. (2011 ▶); Evidente et al. (2006 ▶); Hajieghrari et al. (2008 ▶); Kumar et al. (2012 ▶); Vinale (2009 ▶); Xie et al. (2013 ▶). For the stability of the temperature controller used in the data collection, see: Cosier & Glazer (1986 ▶).

Experimental

Crystal data

C20H28O3 M = 316.42 Monoclinic, a = 9.1703 (4) Å b = 10.2234 (5) Å c = 9.2681 (4) Å β = 108.539 (1)° V = 823.81 (6) Å3 Z = 2 Mo Kα radiation μ = 0.08 mm−1 T = 100 K 0.47 × 0.28 × 0.17 mm

Data collection

Bruker APEX DUO CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.962, T max = 0.986 17364 measured reflections 2517 independent reflections 2492 reflections with I > 2σ(I) R int = 0.022

Refinement

R[F 2 > 2σ(F 2)] = 0.026 wR(F 2) = 0.069 S = 1.06 2517 reflections 213 parameters 1 restraint H-atom parameters constrained Δρmax = 0.29 e Å−3 Δρmin = −0.16 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL, PLATON (Spek, 2009 ▶), Mercury (Macrae et al., 2006 ▶) and publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536814004632/hb7180sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536814004632/hb7180Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S1600536814004632/hb7180Isup3.cml CCDC reference: 989255 Additional supporting information: crystallographic information; 3D view; checkCIF report
C20H28O3F(000) = 344
Mr = 316.42Dx = 1.276 Mg m3
Monoclinic, P21Melting point = 484.05–484.95 K
Hall symbol: P 2ybMo Kα radiation, λ = 0.71073 Å
a = 9.1703 (4) ÅCell parameters from 2517 reflections
b = 10.2234 (5) Åθ = 2.3–30.0°
c = 9.2681 (4) ŵ = 0.08 mm1
β = 108.539 (1)°T = 100 K
V = 823.81 (6) Å3Block, colorless
Z = 20.47 × 0.28 × 0.17 mm
Bruker APEX DUO CCD area-detector diffractometer2517 independent reflections
Radiation source: sealed tube2492 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.022
φ and ω scansθmax = 30.0°, θmin = 2.3°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −12→12
Tmin = 0.962, Tmax = 0.986k = −14→14
17364 measured reflectionsl = −13→12
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.026Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.069H-atom parameters constrained
S = 1.06w = 1/[σ2(Fo2) + (0.0476P)2 + 0.0833P] where P = (Fo2 + 2Fc2)/3
2517 reflections(Δ/σ)max = 0.001
213 parametersΔρmax = 0.29 e Å3
1 restraintΔρmin = −0.16 e Å3
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K.
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.56994 (9)0.42031 (8)0.42963 (9)0.01666 (16)
O20.36991 (11)0.48960 (10)0.49811 (11)0.0247 (2)
O30.76108 (11)1.06399 (9)0.03459 (10)0.02325 (19)
C10.67439 (12)0.47448 (10)0.36106 (11)0.01291 (18)
C20.46151 (13)0.51131 (11)0.43292 (12)0.01624 (19)
C30.47893 (11)0.63000 (11)0.34415 (12)0.01470 (19)
H3A0.46340.71120.39550.018*
H3B0.40430.62810.24000.018*
C40.64611 (11)0.62098 (10)0.33997 (11)0.01189 (17)
C50.64570 (11)0.66703 (10)0.18078 (11)0.01136 (17)
H5A0.57610.60330.10950.014*
C60.79247 (11)0.66867 (11)0.13020 (11)0.01212 (17)
C70.92305 (11)0.75723 (11)0.23495 (11)0.01437 (19)
H7A0.93110.73100.34120.017*
C80.88414 (13)0.90599 (12)0.22599 (13)0.0189 (2)
H8A0.85150.92880.31490.023*
H8B0.97980.95520.23590.023*
C90.76116 (13)0.95343 (12)0.08374 (12)0.0166 (2)
C100.63987 (12)0.85336 (11)0.01091 (11)0.01396 (19)
H10A0.55980.8898−0.08050.017*
C110.56749 (12)0.80094 (11)0.12984 (12)0.01427 (19)
H11A0.58800.86150.21740.017*
H11B0.45490.79040.08370.017*
C120.72306 (12)0.73384 (11)−0.03161 (11)0.01303 (18)
C130.84953 (12)0.52859 (11)0.12202 (12)0.0158 (2)
H13A0.93570.53200.07930.019*
H13B0.76530.47810.05010.019*
C140.90411 (12)0.45392 (12)0.27425 (13)0.0176 (2)
H14A0.97070.38090.26330.021*
H14B0.96860.51380.35280.021*
C150.77981 (11)0.39824 (11)0.33248 (11)0.01390 (19)
C160.75106 (12)0.69002 (12)0.48303 (12)0.0160 (2)
H16A0.71780.66790.57060.024*
H16B0.74460.78490.46720.024*
H16C0.85750.66120.50230.024*
C171.08590 (12)0.73508 (14)0.22352 (14)0.0221 (2)
H17A1.15880.79430.29380.033*
H17B1.08480.75260.11920.033*
H17C1.11730.64430.25030.033*
C180.84033 (13)0.77677 (12)−0.10901 (12)0.0170 (2)
H18A0.78660.8195−0.20600.026*
H18B0.89580.7000−0.12770.026*
H18C0.91360.8382−0.04280.026*
C190.60412 (13)0.64867 (12)−0.14867 (12)0.0176 (2)
H19A0.56000.6985−0.24290.026*
H19B0.52210.6234−0.10740.026*
H19C0.65460.5699−0.17020.026*
C200.78631 (13)0.25306 (11)0.36025 (13)0.0175 (2)
H20A0.70420.22770.40120.026*
H20B0.88630.23000.43340.026*
H20C0.77270.20690.26420.026*
U11U22U33U12U13U23
O10.0190 (3)0.0147 (4)0.0198 (4)0.0004 (3)0.0111 (3)0.0019 (3)
O20.0280 (4)0.0209 (4)0.0337 (5)−0.0020 (4)0.0217 (4)0.0015 (4)
O30.0322 (5)0.0150 (4)0.0242 (4)−0.0030 (3)0.0112 (3)0.0008 (3)
C10.0145 (4)0.0132 (4)0.0119 (4)0.0001 (3)0.0052 (3)0.0008 (3)
C20.0177 (4)0.0148 (5)0.0181 (4)−0.0008 (4)0.0084 (4)−0.0013 (4)
C30.0138 (4)0.0154 (5)0.0172 (4)0.0013 (4)0.0082 (3)0.0015 (4)
C40.0125 (4)0.0122 (4)0.0123 (4)0.0010 (3)0.0058 (3)0.0003 (3)
C50.0112 (4)0.0117 (4)0.0120 (4)0.0013 (3)0.0049 (3)0.0006 (3)
C60.0116 (4)0.0140 (4)0.0119 (4)0.0012 (3)0.0053 (3)0.0002 (3)
C70.0114 (4)0.0176 (5)0.0136 (4)−0.0012 (4)0.0033 (3)−0.0001 (4)
C80.0185 (5)0.0187 (5)0.0180 (5)−0.0035 (4)0.0035 (4)−0.0027 (4)
C90.0203 (5)0.0154 (5)0.0164 (4)−0.0006 (4)0.0088 (4)−0.0014 (4)
C100.0146 (4)0.0135 (5)0.0141 (4)0.0009 (3)0.0050 (3)0.0018 (4)
C110.0145 (4)0.0137 (5)0.0160 (4)0.0036 (3)0.0068 (3)0.0028 (4)
C120.0143 (4)0.0135 (4)0.0115 (4)−0.0010 (3)0.0045 (3)0.0000 (3)
C130.0182 (4)0.0152 (5)0.0168 (4)0.0040 (4)0.0096 (4)0.0010 (4)
C140.0156 (4)0.0182 (5)0.0211 (5)0.0057 (4)0.0088 (4)0.0051 (4)
C150.0149 (4)0.0138 (4)0.0128 (4)0.0023 (4)0.0041 (3)0.0012 (4)
C160.0183 (4)0.0171 (5)0.0128 (4)−0.0020 (4)0.0053 (3)−0.0029 (4)
C170.0122 (4)0.0313 (6)0.0234 (5)−0.0006 (4)0.0066 (4)0.0023 (5)
C180.0192 (4)0.0198 (5)0.0144 (4)−0.0029 (4)0.0085 (3)0.0001 (4)
C190.0197 (4)0.0190 (5)0.0131 (4)−0.0043 (4)0.0038 (3)−0.0013 (4)
C200.0191 (5)0.0131 (5)0.0184 (5)0.0033 (4)0.0033 (4)0.0005 (4)
O1—C21.3691 (14)C10—H10A1.0000
O1—C11.4195 (12)C11—H11A0.9900
O2—C21.2012 (14)C11—H11B0.9900
O3—C91.2186 (15)C12—C181.5343 (14)
C1—C151.3323 (14)C12—C191.5403 (15)
C1—C41.5220 (15)C13—C141.5410 (15)
C2—C31.5027 (16)C13—H13A0.9900
C3—C41.5486 (14)C13—H13B0.9900
C3—H3A0.9900C14—C151.5185 (15)
C3—H3B0.9900C14—H14A0.9900
C4—C161.5398 (14)C14—H14B0.9900
C4—C51.5476 (14)C15—C201.5043 (16)
C5—C111.5480 (14)C16—H16A0.9800
C5—C61.5597 (13)C16—H16B0.9800
C5—H5A1.0000C16—H16C0.9800
C6—C131.5349 (15)C17—H17A0.9800
C6—C71.5674 (14)C17—H17B0.9800
C6—C121.5783 (14)C17—H17C0.9800
C7—C171.5470 (15)C18—H18A0.9800
C7—C81.5582 (17)C18—H18B0.9800
C7—H7A1.0000C18—H18C0.9800
C8—C91.5165 (16)C19—H19A0.9800
C8—H8A0.9900C19—H19B0.9800
C8—H8B0.9900C19—H19C0.9800
C9—C101.5040 (15)C20—H20A0.9800
C10—C111.5517 (14)C20—H20B0.9800
C10—C121.5561 (15)C20—H20C0.9800
C2—O1—C1110.06 (9)C5—C11—H11B110.7
C15—C1—O1119.76 (10)C10—C11—H11B110.7
C15—C1—C4130.91 (10)H11A—C11—H11B108.8
O1—C1—C4109.25 (9)C18—C12—C19106.08 (8)
O2—C2—O1120.97 (11)C18—C12—C10111.51 (9)
O2—C2—C3129.62 (11)C19—C12—C10109.14 (8)
O1—C2—C3109.40 (9)C18—C12—C6115.73 (8)
C2—C3—C4104.12 (9)C19—C12—C6114.33 (9)
C2—C3—H3A110.9C10—C12—C699.96 (8)
C4—C3—H3A110.9C6—C13—C14115.69 (9)
C2—C3—H3B110.9C6—C13—H13A108.4
C4—C3—H3B110.9C14—C13—H13A108.4
H3A—C3—H3B109.0C6—C13—H13B108.4
C1—C4—C16107.83 (9)C14—C13—H13B108.4
C1—C4—C5111.74 (8)H13A—C13—H13B107.4
C16—C4—C5119.53 (9)C15—C14—C13116.69 (9)
C1—C4—C3100.66 (8)C15—C14—H14A108.1
C16—C4—C3107.69 (8)C13—C14—H14A108.1
C5—C4—C3107.66 (8)C15—C14—H14B108.1
C4—C5—C11114.85 (8)C13—C14—H14B108.1
C4—C5—C6123.30 (8)H14A—C14—H14B107.3
C11—C5—C6105.02 (8)C1—C15—C20122.34 (10)
C4—C5—H5A103.8C1—C15—C14121.70 (10)
C11—C5—H5A103.8C20—C15—C14115.93 (9)
C6—C5—H5A103.8C4—C16—H16A109.5
C13—C6—C5110.19 (8)C4—C16—H16B109.5
C13—C6—C7111.36 (8)H16A—C16—H16B109.5
C5—C6—C7112.48 (8)C4—C16—H16C109.5
C13—C6—C12112.81 (8)H16A—C16—H16C109.5
C5—C6—C1299.45 (8)H16B—C16—H16C109.5
C7—C6—C12110.03 (8)C7—C17—H17A109.5
C17—C7—C8110.42 (9)C7—C17—H17B109.5
C17—C7—C6115.91 (9)H17A—C17—H17B109.5
C8—C7—C6114.45 (8)C7—C17—H17C109.5
C17—C7—H7A104.9H17A—C17—H17C109.5
C8—C7—H7A104.9H17B—C17—H17C109.5
C6—C7—H7A104.9C12—C18—H18A109.5
C9—C8—C7116.93 (9)C12—C18—H18B109.5
C9—C8—H8A108.1H18A—C18—H18B109.5
C7—C8—H8A108.1C12—C18—H18C109.5
C9—C8—H8B108.1H18A—C18—H18C109.5
C7—C8—H8B108.1H18B—C18—H18C109.5
H8A—C8—H8B107.3C12—C19—H19A109.5
O3—C9—C10123.42 (10)C12—C19—H19B109.5
O3—C9—C8122.25 (11)H19A—C19—H19B109.5
C10—C9—C8114.33 (10)C12—C19—H19C109.5
C9—C10—C11109.78 (9)H19A—C19—H19C109.5
C9—C10—C12107.20 (8)H19B—C19—H19C109.5
C11—C10—C12105.28 (8)C15—C20—H20A109.5
C9—C10—H10A111.4C15—C20—H20B109.5
C11—C10—H10A111.4H20A—C20—H20B109.5
C12—C10—H10A111.4C15—C20—H20C109.5
C5—C11—C10105.11 (8)H20A—C20—H20C109.5
C5—C11—H11A110.7H20B—C20—H20C109.5
C10—C11—H11A110.7
C2—O1—C1—C15−173.20 (10)C7—C8—C9—O3−150.53 (11)
C2—O1—C1—C49.64 (11)C7—C8—C9—C1030.16 (14)
C1—O1—C2—O2−173.44 (10)O3—C9—C10—C11−124.95 (11)
C1—O1—C2—C37.53 (12)C8—C9—C10—C1154.36 (12)
O2—C2—C3—C4160.06 (12)O3—C9—C10—C12121.19 (12)
O1—C2—C3—C4−21.02 (11)C8—C9—C10—C12−59.51 (11)
C15—C1—C4—C16−85.57 (13)C4—C5—C11—C10156.08 (8)
O1—C1—C4—C1691.17 (9)C6—C5—C11—C1017.42 (10)
C15—C1—C4—C547.72 (15)C9—C10—C11—C5−100.89 (10)
O1—C1—C4—C5−135.54 (8)C12—C10—C11—C514.19 (10)
C15—C1—C4—C3161.77 (11)C9—C10—C12—C18−45.64 (11)
O1—C1—C4—C3−21.50 (10)C11—C10—C12—C18−162.50 (8)
C2—C3—C4—C124.59 (10)C9—C10—C12—C19−162.51 (9)
C2—C3—C4—C16−88.18 (10)C11—C10—C12—C1980.63 (10)
C2—C3—C4—C5141.69 (9)C9—C10—C12—C677.25 (9)
C1—C4—C5—C11161.08 (8)C11—C10—C12—C6−39.61 (9)
C16—C4—C5—C11−71.71 (12)C13—C6—C12—C18−74.27 (11)
C3—C4—C5—C1151.45 (11)C5—C6—C12—C18169.02 (9)
C1—C4—C5—C6−68.68 (12)C7—C6—C12—C1850.76 (12)
C16—C4—C5—C658.53 (13)C13—C6—C12—C1949.47 (11)
C3—C4—C5—C6−178.31 (9)C5—C6—C12—C19−67.25 (10)
C4—C5—C6—C1365.63 (12)C7—C6—C12—C19174.50 (8)
C11—C5—C6—C13−160.19 (8)C13—C6—C12—C10165.87 (8)
C4—C5—C6—C7−59.28 (13)C5—C6—C12—C1049.15 (9)
C11—C5—C6—C774.90 (10)C7—C6—C12—C10−69.10 (9)
C4—C5—C6—C12−175.68 (9)C5—C6—C13—C14−64.06 (11)
C11—C5—C6—C12−41.51 (9)C7—C6—C13—C1461.49 (11)
C13—C6—C7—C1739.01 (12)C12—C6—C13—C14−174.21 (9)
C5—C6—C7—C17163.27 (9)C6—C13—C14—C1577.90 (13)
C12—C6—C7—C17−86.84 (11)O1—C1—C15—C204.36 (15)
C13—C6—C7—C8169.33 (9)C4—C1—C15—C20−179.19 (10)
C5—C6—C7—C8−66.41 (11)O1—C1—C15—C14−173.71 (9)
C12—C6—C7—C843.47 (11)C4—C1—C15—C142.75 (17)
C17—C7—C8—C9110.78 (10)C13—C14—C15—C1−59.24 (14)
C6—C7—C8—C9−22.18 (13)C13—C14—C15—C20122.58 (11)
D—H···AD—HH···AD···AD—H···A
C3—H3B···O3i0.992.603.5649 (14)165
C16—H16B···O2ii0.982.413.2810 (16)148
C20—H20C···O3iii0.982.563.5292 (15)173
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
C3—H3B⋯O3i 0.992.603.5649 (14)165
C16—H16B⋯O2ii 0.982.413.2810 (16)148
C20—H20C⋯O3iii 0.982.563.5292 (15)173

Symmetry codes: (i) ; (ii) ; (iii) .

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  1 in total

1.  Antifungal Activity of Bioactive Metabolites Produced by Trichoderma asperellum and Trichoderma atroviride in Liquid Medium.

Authors:  Claudia Stracquadanio; Juan Manuel Quiles; Giuseppe Meca; Santa Olga Cacciola
Journal:  J Fungi (Basel)       Date:  2020-11-01
  1 in total

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