| Literature DB >> 24826124 |
Suchada Chantrapromma1, Chotika Jeerapong2, Worrapong Phupong2, Ching Kheng Quah3, Hoong-Kun Fun3.
Abstract
The title compound, C20H28O3, known as 'trichodermaerin' [systematic name: (4E)-4,9,15,16,16-penta-methyl-6-oxa-tetra-cyclo-[10.3.1.0(1,10).0(5,9)]hexa-dec-4-ene-7,13-dione], is a diterpene lactone which was isolated from Trichoderma asperellum. The structure has a tetra-cycic 6-5-7-5 ring system, with the cyclo-hexa-none ring adopting a twisted half-chair conformation and the cyclo-pentane ring adopting a half-chair conformation, whereas the cyclo-heptene and tetra-hydro-furan-anone rings are in chair and envelope (with the methyl-substituted C atom as the flap) conformations, respectively. The three-dimensional architecture is stabilized by C-H⋯O inter-actions.Entities:
Year: 2014 PMID: 24826124 PMCID: PMC3998585 DOI: 10.1107/S1600536814004632
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C20H28O3 | |
| Monoclinic, | Melting point = 484.05–484.95 K |
| Hall symbol: P 2yb | Mo |
| Cell parameters from 2517 reflections | |
| θ = 2.3–30.0° | |
| µ = 0.08 mm−1 | |
| β = 108.539 (1)° | |
| Block, colorless | |
| 0.47 × 0.28 × 0.17 mm |
| Bruker APEX DUO CCD area-detector diffractometer | 2517 independent reflections |
| Radiation source: sealed tube | 2492 reflections with |
| Graphite monochromator | |
| φ and ω scans | θmax = 30.0°, θmin = 2.3° |
| Absorption correction: multi-scan ( | |
| 17364 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 2517 reflections | (Δ/σ)max = 0.001 |
| 213 parameters | Δρmax = 0.29 e Å−3 |
| 1 restraint | Δρmin = −0.16 e Å−3 |
| Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K. |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
| O1 | 0.56994 (9) | 0.42031 (8) | 0.42963 (9) | 0.01666 (16) | |
| O2 | 0.36991 (11) | 0.48960 (10) | 0.49811 (11) | 0.0247 (2) | |
| O3 | 0.76108 (11) | 1.06399 (9) | 0.03459 (10) | 0.02325 (19) | |
| C1 | 0.67439 (12) | 0.47448 (10) | 0.36106 (11) | 0.01291 (18) | |
| C2 | 0.46151 (13) | 0.51131 (11) | 0.43292 (12) | 0.01624 (19) | |
| C3 | 0.47893 (11) | 0.63000 (11) | 0.34415 (12) | 0.01470 (19) | |
| H3A | 0.4634 | 0.7112 | 0.3955 | 0.018* | |
| H3B | 0.4043 | 0.6281 | 0.2400 | 0.018* | |
| C4 | 0.64611 (11) | 0.62098 (10) | 0.33997 (11) | 0.01189 (17) | |
| C5 | 0.64570 (11) | 0.66703 (10) | 0.18078 (11) | 0.01136 (17) | |
| H5A | 0.5761 | 0.6033 | 0.1095 | 0.014* | |
| C6 | 0.79247 (11) | 0.66867 (11) | 0.13020 (11) | 0.01212 (17) | |
| C7 | 0.92305 (11) | 0.75723 (11) | 0.23495 (11) | 0.01437 (19) | |
| H7A | 0.9311 | 0.7310 | 0.3412 | 0.017* | |
| C8 | 0.88414 (13) | 0.90599 (12) | 0.22599 (13) | 0.0189 (2) | |
| H8A | 0.8515 | 0.9288 | 0.3149 | 0.023* | |
| H8B | 0.9798 | 0.9552 | 0.2359 | 0.023* | |
| C9 | 0.76116 (13) | 0.95343 (12) | 0.08374 (12) | 0.0166 (2) | |
| C10 | 0.63987 (12) | 0.85336 (11) | 0.01091 (11) | 0.01396 (19) | |
| H10A | 0.5598 | 0.8898 | −0.0805 | 0.017* | |
| C11 | 0.56749 (12) | 0.80094 (11) | 0.12984 (12) | 0.01427 (19) | |
| H11A | 0.5880 | 0.8615 | 0.2174 | 0.017* | |
| H11B | 0.4549 | 0.7904 | 0.0837 | 0.017* | |
| C12 | 0.72306 (12) | 0.73384 (11) | −0.03161 (11) | 0.01303 (18) | |
| C13 | 0.84953 (12) | 0.52859 (11) | 0.12202 (12) | 0.0158 (2) | |
| H13A | 0.9357 | 0.5320 | 0.0793 | 0.019* | |
| H13B | 0.7653 | 0.4781 | 0.0501 | 0.019* | |
| C14 | 0.90411 (12) | 0.45392 (12) | 0.27425 (13) | 0.0176 (2) | |
| H14A | 0.9707 | 0.3809 | 0.2633 | 0.021* | |
| H14B | 0.9686 | 0.5138 | 0.3528 | 0.021* | |
| C15 | 0.77981 (11) | 0.39824 (11) | 0.33248 (11) | 0.01390 (19) | |
| C16 | 0.75106 (12) | 0.69002 (12) | 0.48303 (12) | 0.0160 (2) | |
| H16A | 0.7178 | 0.6679 | 0.5706 | 0.024* | |
| H16B | 0.7446 | 0.7849 | 0.4672 | 0.024* | |
| H16C | 0.8575 | 0.6612 | 0.5023 | 0.024* | |
| C17 | 1.08590 (12) | 0.73508 (14) | 0.22352 (14) | 0.0221 (2) | |
| H17A | 1.1588 | 0.7943 | 0.2938 | 0.033* | |
| H17B | 1.0848 | 0.7526 | 0.1192 | 0.033* | |
| H17C | 1.1173 | 0.6443 | 0.2503 | 0.033* | |
| C18 | 0.84033 (13) | 0.77677 (12) | −0.10901 (12) | 0.0170 (2) | |
| H18A | 0.7866 | 0.8195 | −0.2060 | 0.026* | |
| H18B | 0.8958 | 0.7000 | −0.1277 | 0.026* | |
| H18C | 0.9136 | 0.8382 | −0.0428 | 0.026* | |
| C19 | 0.60412 (13) | 0.64867 (12) | −0.14867 (12) | 0.0176 (2) | |
| H19A | 0.5600 | 0.6985 | −0.2429 | 0.026* | |
| H19B | 0.5221 | 0.6234 | −0.1074 | 0.026* | |
| H19C | 0.6546 | 0.5699 | −0.1702 | 0.026* | |
| C20 | 0.78631 (13) | 0.25306 (11) | 0.36025 (13) | 0.0175 (2) | |
| H20A | 0.7042 | 0.2277 | 0.4012 | 0.026* | |
| H20B | 0.8863 | 0.2300 | 0.4334 | 0.026* | |
| H20C | 0.7727 | 0.2069 | 0.2642 | 0.026* |
| O1 | 0.0190 (3) | 0.0147 (4) | 0.0198 (4) | 0.0004 (3) | 0.0111 (3) | 0.0019 (3) |
| O2 | 0.0280 (4) | 0.0209 (4) | 0.0337 (5) | −0.0020 (4) | 0.0217 (4) | 0.0015 (4) |
| O3 | 0.0322 (5) | 0.0150 (4) | 0.0242 (4) | −0.0030 (3) | 0.0112 (3) | 0.0008 (3) |
| C1 | 0.0145 (4) | 0.0132 (4) | 0.0119 (4) | 0.0001 (3) | 0.0052 (3) | 0.0008 (3) |
| C2 | 0.0177 (4) | 0.0148 (5) | 0.0181 (4) | −0.0008 (4) | 0.0084 (4) | −0.0013 (4) |
| C3 | 0.0138 (4) | 0.0154 (5) | 0.0172 (4) | 0.0013 (4) | 0.0082 (3) | 0.0015 (4) |
| C4 | 0.0125 (4) | 0.0122 (4) | 0.0123 (4) | 0.0010 (3) | 0.0058 (3) | 0.0003 (3) |
| C5 | 0.0112 (4) | 0.0117 (4) | 0.0120 (4) | 0.0013 (3) | 0.0049 (3) | 0.0006 (3) |
| C6 | 0.0116 (4) | 0.0140 (4) | 0.0119 (4) | 0.0012 (3) | 0.0053 (3) | 0.0002 (3) |
| C7 | 0.0114 (4) | 0.0176 (5) | 0.0136 (4) | −0.0012 (4) | 0.0033 (3) | −0.0001 (4) |
| C8 | 0.0185 (5) | 0.0187 (5) | 0.0180 (5) | −0.0035 (4) | 0.0035 (4) | −0.0027 (4) |
| C9 | 0.0203 (5) | 0.0154 (5) | 0.0164 (4) | −0.0006 (4) | 0.0088 (4) | −0.0014 (4) |
| C10 | 0.0146 (4) | 0.0135 (5) | 0.0141 (4) | 0.0009 (3) | 0.0050 (3) | 0.0018 (4) |
| C11 | 0.0145 (4) | 0.0137 (5) | 0.0160 (4) | 0.0036 (3) | 0.0068 (3) | 0.0028 (4) |
| C12 | 0.0143 (4) | 0.0135 (4) | 0.0115 (4) | −0.0010 (3) | 0.0045 (3) | 0.0000 (3) |
| C13 | 0.0182 (4) | 0.0152 (5) | 0.0168 (4) | 0.0040 (4) | 0.0096 (4) | 0.0010 (4) |
| C14 | 0.0156 (4) | 0.0182 (5) | 0.0211 (5) | 0.0057 (4) | 0.0088 (4) | 0.0051 (4) |
| C15 | 0.0149 (4) | 0.0138 (4) | 0.0128 (4) | 0.0023 (4) | 0.0041 (3) | 0.0012 (4) |
| C16 | 0.0183 (4) | 0.0171 (5) | 0.0128 (4) | −0.0020 (4) | 0.0053 (3) | −0.0029 (4) |
| C17 | 0.0122 (4) | 0.0313 (6) | 0.0234 (5) | −0.0006 (4) | 0.0066 (4) | 0.0023 (5) |
| C18 | 0.0192 (4) | 0.0198 (5) | 0.0144 (4) | −0.0029 (4) | 0.0085 (3) | 0.0001 (4) |
| C19 | 0.0197 (4) | 0.0190 (5) | 0.0131 (4) | −0.0043 (4) | 0.0038 (3) | −0.0013 (4) |
| C20 | 0.0191 (5) | 0.0131 (5) | 0.0184 (5) | 0.0033 (4) | 0.0033 (4) | 0.0005 (4) |
| O1—C2 | 1.3691 (14) | C10—H10A | 1.0000 |
| O1—C1 | 1.4195 (12) | C11—H11A | 0.9900 |
| O2—C2 | 1.2012 (14) | C11—H11B | 0.9900 |
| O3—C9 | 1.2186 (15) | C12—C18 | 1.5343 (14) |
| C1—C15 | 1.3323 (14) | C12—C19 | 1.5403 (15) |
| C1—C4 | 1.5220 (15) | C13—C14 | 1.5410 (15) |
| C2—C3 | 1.5027 (16) | C13—H13A | 0.9900 |
| C3—C4 | 1.5486 (14) | C13—H13B | 0.9900 |
| C3—H3A | 0.9900 | C14—C15 | 1.5185 (15) |
| C3—H3B | 0.9900 | C14—H14A | 0.9900 |
| C4—C16 | 1.5398 (14) | C14—H14B | 0.9900 |
| C4—C5 | 1.5476 (14) | C15—C20 | 1.5043 (16) |
| C5—C11 | 1.5480 (14) | C16—H16A | 0.9800 |
| C5—C6 | 1.5597 (13) | C16—H16B | 0.9800 |
| C5—H5A | 1.0000 | C16—H16C | 0.9800 |
| C6—C13 | 1.5349 (15) | C17—H17A | 0.9800 |
| C6—C7 | 1.5674 (14) | C17—H17B | 0.9800 |
| C6—C12 | 1.5783 (14) | C17—H17C | 0.9800 |
| C7—C17 | 1.5470 (15) | C18—H18A | 0.9800 |
| C7—C8 | 1.5582 (17) | C18—H18B | 0.9800 |
| C7—H7A | 1.0000 | C18—H18C | 0.9800 |
| C8—C9 | 1.5165 (16) | C19—H19A | 0.9800 |
| C8—H8A | 0.9900 | C19—H19B | 0.9800 |
| C8—H8B | 0.9900 | C19—H19C | 0.9800 |
| C9—C10 | 1.5040 (15) | C20—H20A | 0.9800 |
| C10—C11 | 1.5517 (14) | C20—H20B | 0.9800 |
| C10—C12 | 1.5561 (15) | C20—H20C | 0.9800 |
| C2—O1—C1 | 110.06 (9) | C5—C11—H11B | 110.7 |
| C15—C1—O1 | 119.76 (10) | C10—C11—H11B | 110.7 |
| C15—C1—C4 | 130.91 (10) | H11A—C11—H11B | 108.8 |
| O1—C1—C4 | 109.25 (9) | C18—C12—C19 | 106.08 (8) |
| O2—C2—O1 | 120.97 (11) | C18—C12—C10 | 111.51 (9) |
| O2—C2—C3 | 129.62 (11) | C19—C12—C10 | 109.14 (8) |
| O1—C2—C3 | 109.40 (9) | C18—C12—C6 | 115.73 (8) |
| C2—C3—C4 | 104.12 (9) | C19—C12—C6 | 114.33 (9) |
| C2—C3—H3A | 110.9 | C10—C12—C6 | 99.96 (8) |
| C4—C3—H3A | 110.9 | C6—C13—C14 | 115.69 (9) |
| C2—C3—H3B | 110.9 | C6—C13—H13A | 108.4 |
| C4—C3—H3B | 110.9 | C14—C13—H13A | 108.4 |
| H3A—C3—H3B | 109.0 | C6—C13—H13B | 108.4 |
| C1—C4—C16 | 107.83 (9) | C14—C13—H13B | 108.4 |
| C1—C4—C5 | 111.74 (8) | H13A—C13—H13B | 107.4 |
| C16—C4—C5 | 119.53 (9) | C15—C14—C13 | 116.69 (9) |
| C1—C4—C3 | 100.66 (8) | C15—C14—H14A | 108.1 |
| C16—C4—C3 | 107.69 (8) | C13—C14—H14A | 108.1 |
| C5—C4—C3 | 107.66 (8) | C15—C14—H14B | 108.1 |
| C4—C5—C11 | 114.85 (8) | C13—C14—H14B | 108.1 |
| C4—C5—C6 | 123.30 (8) | H14A—C14—H14B | 107.3 |
| C11—C5—C6 | 105.02 (8) | C1—C15—C20 | 122.34 (10) |
| C4—C5—H5A | 103.8 | C1—C15—C14 | 121.70 (10) |
| C11—C5—H5A | 103.8 | C20—C15—C14 | 115.93 (9) |
| C6—C5—H5A | 103.8 | C4—C16—H16A | 109.5 |
| C13—C6—C5 | 110.19 (8) | C4—C16—H16B | 109.5 |
| C13—C6—C7 | 111.36 (8) | H16A—C16—H16B | 109.5 |
| C5—C6—C7 | 112.48 (8) | C4—C16—H16C | 109.5 |
| C13—C6—C12 | 112.81 (8) | H16A—C16—H16C | 109.5 |
| C5—C6—C12 | 99.45 (8) | H16B—C16—H16C | 109.5 |
| C7—C6—C12 | 110.03 (8) | C7—C17—H17A | 109.5 |
| C17—C7—C8 | 110.42 (9) | C7—C17—H17B | 109.5 |
| C17—C7—C6 | 115.91 (9) | H17A—C17—H17B | 109.5 |
| C8—C7—C6 | 114.45 (8) | C7—C17—H17C | 109.5 |
| C17—C7—H7A | 104.9 | H17A—C17—H17C | 109.5 |
| C8—C7—H7A | 104.9 | H17B—C17—H17C | 109.5 |
| C6—C7—H7A | 104.9 | C12—C18—H18A | 109.5 |
| C9—C8—C7 | 116.93 (9) | C12—C18—H18B | 109.5 |
| C9—C8—H8A | 108.1 | H18A—C18—H18B | 109.5 |
| C7—C8—H8A | 108.1 | C12—C18—H18C | 109.5 |
| C9—C8—H8B | 108.1 | H18A—C18—H18C | 109.5 |
| C7—C8—H8B | 108.1 | H18B—C18—H18C | 109.5 |
| H8A—C8—H8B | 107.3 | C12—C19—H19A | 109.5 |
| O3—C9—C10 | 123.42 (10) | C12—C19—H19B | 109.5 |
| O3—C9—C8 | 122.25 (11) | H19A—C19—H19B | 109.5 |
| C10—C9—C8 | 114.33 (10) | C12—C19—H19C | 109.5 |
| C9—C10—C11 | 109.78 (9) | H19A—C19—H19C | 109.5 |
| C9—C10—C12 | 107.20 (8) | H19B—C19—H19C | 109.5 |
| C11—C10—C12 | 105.28 (8) | C15—C20—H20A | 109.5 |
| C9—C10—H10A | 111.4 | C15—C20—H20B | 109.5 |
| C11—C10—H10A | 111.4 | H20A—C20—H20B | 109.5 |
| C12—C10—H10A | 111.4 | C15—C20—H20C | 109.5 |
| C5—C11—C10 | 105.11 (8) | H20A—C20—H20C | 109.5 |
| C5—C11—H11A | 110.7 | H20B—C20—H20C | 109.5 |
| C10—C11—H11A | 110.7 | ||
| C2—O1—C1—C15 | −173.20 (10) | C7—C8—C9—O3 | −150.53 (11) |
| C2—O1—C1—C4 | 9.64 (11) | C7—C8—C9—C10 | 30.16 (14) |
| C1—O1—C2—O2 | −173.44 (10) | O3—C9—C10—C11 | −124.95 (11) |
| C1—O1—C2—C3 | 7.53 (12) | C8—C9—C10—C11 | 54.36 (12) |
| O2—C2—C3—C4 | 160.06 (12) | O3—C9—C10—C12 | 121.19 (12) |
| O1—C2—C3—C4 | −21.02 (11) | C8—C9—C10—C12 | −59.51 (11) |
| C15—C1—C4—C16 | −85.57 (13) | C4—C5—C11—C10 | 156.08 (8) |
| O1—C1—C4—C16 | 91.17 (9) | C6—C5—C11—C10 | 17.42 (10) |
| C15—C1—C4—C5 | 47.72 (15) | C9—C10—C11—C5 | −100.89 (10) |
| O1—C1—C4—C5 | −135.54 (8) | C12—C10—C11—C5 | 14.19 (10) |
| C15—C1—C4—C3 | 161.77 (11) | C9—C10—C12—C18 | −45.64 (11) |
| O1—C1—C4—C3 | −21.50 (10) | C11—C10—C12—C18 | −162.50 (8) |
| C2—C3—C4—C1 | 24.59 (10) | C9—C10—C12—C19 | −162.51 (9) |
| C2—C3—C4—C16 | −88.18 (10) | C11—C10—C12—C19 | 80.63 (10) |
| C2—C3—C4—C5 | 141.69 (9) | C9—C10—C12—C6 | 77.25 (9) |
| C1—C4—C5—C11 | 161.08 (8) | C11—C10—C12—C6 | −39.61 (9) |
| C16—C4—C5—C11 | −71.71 (12) | C13—C6—C12—C18 | −74.27 (11) |
| C3—C4—C5—C11 | 51.45 (11) | C5—C6—C12—C18 | 169.02 (9) |
| C1—C4—C5—C6 | −68.68 (12) | C7—C6—C12—C18 | 50.76 (12) |
| C16—C4—C5—C6 | 58.53 (13) | C13—C6—C12—C19 | 49.47 (11) |
| C3—C4—C5—C6 | −178.31 (9) | C5—C6—C12—C19 | −67.25 (10) |
| C4—C5—C6—C13 | 65.63 (12) | C7—C6—C12—C19 | 174.50 (8) |
| C11—C5—C6—C13 | −160.19 (8) | C13—C6—C12—C10 | 165.87 (8) |
| C4—C5—C6—C7 | −59.28 (13) | C5—C6—C12—C10 | 49.15 (9) |
| C11—C5—C6—C7 | 74.90 (10) | C7—C6—C12—C10 | −69.10 (9) |
| C4—C5—C6—C12 | −175.68 (9) | C5—C6—C13—C14 | −64.06 (11) |
| C11—C5—C6—C12 | −41.51 (9) | C7—C6—C13—C14 | 61.49 (11) |
| C13—C6—C7—C17 | 39.01 (12) | C12—C6—C13—C14 | −174.21 (9) |
| C5—C6—C7—C17 | 163.27 (9) | C6—C13—C14—C15 | 77.90 (13) |
| C12—C6—C7—C17 | −86.84 (11) | O1—C1—C15—C20 | 4.36 (15) |
| C13—C6—C7—C8 | 169.33 (9) | C4—C1—C15—C20 | −179.19 (10) |
| C5—C6—C7—C8 | −66.41 (11) | O1—C1—C15—C14 | −173.71 (9) |
| C12—C6—C7—C8 | 43.47 (11) | C4—C1—C15—C14 | 2.75 (17) |
| C17—C7—C8—C9 | 110.78 (10) | C13—C14—C15—C1 | −59.24 (14) |
| C6—C7—C8—C9 | −22.18 (13) | C13—C14—C15—C20 | 122.58 (11) |
| H··· | ||||
| C3—H3 | 0.99 | 2.60 | 3.5649 (14) | 165 |
| C16—H16 | 0.98 | 2.41 | 3.2810 (16) | 148 |
| C20—H20 | 0.98 | 2.56 | 3.5292 (15) | 173 |
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| C3—H3 | 0.99 | 2.60 | 3.5649 (14) | 165 |
| C16—H16 | 0.98 | 2.41 | 3.2810 (16) | 148 |
| C20—H20 | 0.98 | 2.56 | 3.5292 (15) | 173 |
Symmetry codes: (i) ; (ii) ; (iii) .