Literature DB >> 24824343

Unveiling novel interactions of histone chaperone Asf1 linked to TREX-2 factors Sus1 and Thp1.

Mercè Pamblanco1, Paula Oliete-Calvo2, Encar García-Oliver2, M Luz Valero3, Manuel M Sanchez del Pino1, Susana Rodríguez-Navarro2.   

Abstract

Anti-silencing function 1 (Asf1) is a conserved key eukaryotic histone H3/H4 chaperone that participates in a variety of DNA and chromatin-related processes. These include the assembly and disassembly of histones H3 and H4 from chromatin during replication, transcription, and DNA repair. In addition, Asf1 is required for H3K56 acetylation activity dependent on histone acetyltransferase Rtt109. Thus, Asf1 impacts on many aspects of DNA metabolism. To gain insights into the functional links of Asf1 with other cellular machineries, we employed mass spectrometry coupled to tandem affinity purification (TAP) to investigate novel physical interactions of Asf1. Under different TAP-MS analysis conditions, we describe a new repertoire of Asf1 physical interactions and novel Asf1 post-translational modifications as ubiquitination, methylation and acetylation that open up new ways to regulate Asf1 functions. Asf1 co-purifies with several subunits of the TREX-2, SAGA complexes, and with nucleoporins Nup2, Nup60, and Nup57, which are all involved in transcription coupled to mRNA export in eukaryotes. Reciprocally, Thp1 and Sus1 interact with Asf1. Albeit mRNA export and GAL1 transcription are not affected in asf1Δ a strong genetic interaction exists between ASF1 and SUS1. Notably, supporting a functional link between Asf1 and TREX-2, both Sus1 and Thp1 affect the levels of Asf1-dependent histone H3K56 acetylation and histone H3 and H4 incorporation onto chromatin. Additionally, we provide evidence for a role of Asf1 in histone H2B ubiquitination. This work proposes a functional link between Asf1 and TREX-2 components in histone metabolism at the vicinity of the nuclear pore complex.

Entities:  

Keywords:  (5-10) yAsf1; SAGA; Sus1; TAP-MS strategy; TREX-2; histones; yeast

Mesh:

Substances:

Year:  2014        PMID: 24824343      PMCID: PMC4133220          DOI: 10.4161/nucl.29155

Source DB:  PubMed          Journal:  Nucleus        ISSN: 1949-1034            Impact factor:   4.197


  57 in total

1.  Dynamic interaction of DNA damage checkpoint protein Rad53 with chromatin assembly factor Asf1.

Authors:  A Emili; D M Schieltz; J R Yates; L H Hartwell
Journal:  Mol Cell       Date:  2001-01       Impact factor: 17.970

Review 2.  The tandem affinity purification (TAP) method: a general procedure of protein complex purification.

Authors:  O Puig; F Caspary; G Rigaut; B Rutz; E Bouveret; E Bragado-Nilsson; M Wilm; B Séraphin
Journal:  Methods       Date:  2001-07       Impact factor: 3.608

3.  The RCAF complex mediates chromatin assembly during DNA replication and repair.

Authors:  J K Tyler; C R Adams; S R Chen; R Kobayashi; R T Kamakaka; J T Kadonaga
Journal:  Nature       Date:  1999-12-02       Impact factor: 49.962

Review 4.  The histone chaperone Asf1 at the crossroads of chromatin and DNA checkpoint pathways.

Authors:  Florence Mousson; Françoise Ochsenbein; Carl Mann
Journal:  Chromosoma       Date:  2006-12-19       Impact factor: 4.316

5.  Structural basis for the histone chaperone activity of Asf1.

Authors:  Christine M English; Melissa W Adkins; Joshua J Carson; Mair E A Churchill; Jessica K Tyler
Journal:  Cell       Date:  2006-11-03       Impact factor: 41.582

6.  Histone H3-K56 acetylation is catalyzed by histone chaperone-dependent complexes.

Authors:  Toshiaki Tsubota; Christopher E Berndsen; Judith A Erkmann; Corey L Smith; Lanhao Yang; Michael A Freitas; John M Denu; Paul D Kaufman
Journal:  Mol Cell       Date:  2007-02-22       Impact factor: 17.970

7.  Peptide identification quality control.

Authors:  Marc Vaudel; Julia M Burkhart; Albert Sickmann; Lennart Martens; René P Zahedi
Journal:  Proteomics       Date:  2011-04-18       Impact factor: 3.984

8.  Yeast ASF1 protein is required for cell cycle regulation of histone gene transcription.

Authors:  A Sutton; J Bucaria; M A Osley; R Sternglanz
Journal:  Genetics       Date:  2001-06       Impact factor: 4.562

9.  Asf1 links Rad53 to control of chromatin assembly.

Authors:  F Hu; A A Alcasabas; S J Elledge
Journal:  Genes Dev       Date:  2001-05-01       Impact factor: 11.361

10.  Acetylation of lysine 56 of histone H3 catalyzed by RTT109 and regulated by ASF1 is required for replisome integrity.

Authors:  Junhong Han; Hui Zhou; Zhizhong Li; Rui-Ming Xu; Zhiguo Zhang
Journal:  J Biol Chem       Date:  2007-08-09       Impact factor: 5.157

View more
  7 in total

1.  The evolutionarily conserved factor Sus1/ENY2 plays a role in telomere length maintenance.

Authors:  Amparo Galán; Encar García-Oliver; Carme Nuño-Cabanes; Linda Rubinstein; Martin Kupiec; Susana Rodríguez-Navarro
Journal:  Curr Genet       Date:  2017-11-07       Impact factor: 3.886

2.  A role for Mog1 in H2Bub1 and H3K4me3 regulation affecting RNAPII transcription and mRNA export.

Authors:  Paula Oliete-Calvo; Joan Serrano-Quílez; Carme Nuño-Cabanes; María E Pérez-Martínez; Luis M Soares; Bernhard Dichtl; Stephen Buratowski; José E Pérez-Ortín; Susana Rodríguez-Navarro
Journal:  EMBO Rep       Date:  2018-09-24       Impact factor: 8.807

3.  Comprehensive analysis of interacting proteins and genome-wide location studies of the Sas3-dependent NuA3 histone acetyltransferase complex.

Authors:  Sara Vicente-Muñoz; Paco Romero; Lorena Magraner-Pardo; Celia P Martinez-Jimenez; Vicente Tordera; Mercè Pamblanco
Journal:  FEBS Open Bio       Date:  2014-11-08       Impact factor: 2.693

4.  The yeast Ty1 retrotransposon requires components of the nuclear pore complex for transcription and genomic integration.

Authors:  Savrina Manhas; Lina Ma; Vivien Measday
Journal:  Nucleic Acids Res       Date:  2018-04-20       Impact factor: 16.971

5.  Data for the identification of proteins and post-translational modifications of proteins associated to histones H3 and H4 in S. cerevisiae, using tandem affinity purification coupled with mass spectrometry.

Authors:  M Luz Valero; Ramon Sendra; Mercè Pamblanco
Journal:  Data Brief       Date:  2016-02-05

6.  Translation of Genotype to Phenotype by a Hierarchy of Cell Subsystems.

Authors:  Michael Ku Yu; Michael Kramer; Janusz Dutkowski; Rohith Srivas; Katherine Licon; Jason Kreisberg; Cherie T Ng; Nevan Krogan; Roded Sharan; Trey Ideker
Journal:  Cell Syst       Date:  2016-02-24       Impact factor: 10.304

7.  SAGA-CORE subunit Spt7 is required for correct Ubp8 localization, chromatin association and deubiquitinase activity.

Authors:  Carme Nuño-Cabanes; Varinia García-Molinero; Manuel Martín-Expósito; María-Eugenia Gas; Paula Oliete-Calvo; Encar García-Oliver; María de la Iglesia-Vayá; Susana Rodríguez-Navarro
Journal:  Epigenetics Chromatin       Date:  2020-10-28       Impact factor: 4.954

  7 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.