Literature DB >> 24823781

Pseudogene-derived endogenous siRNAs and their function.

Wen-Ling Chan1, Jan-Gowth Chang.   

Abstract

Pseudogenes were once considered genomic fossils, but recent studies indicate that they may function as gene regulators through the generation of endogenous small interfering RNAs (esiRNAs), antisense RNAs, and decoys for microRNAs. In this review, we summarize pseudogene study methods, emphasizing relevant publicly available resources, and we describe a systematic pipeline to identify pseudogene-derived esiRNAs and their targets, which can lead to a deeper understanding of pseudogene function.

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Year:  2014        PMID: 24823781     DOI: 10.1007/978-1-4939-0835-6_15

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  13 in total

1.  Natural variability of minimotifs in 1092 people indicates that minimotifs are targets of evolution.

Authors:  Kenneth F Lyon; Christy L Strong; Steve G Schooler; Richard J Young; Nervik Roy; Brittany Ozar; Mark Bachmeier; Sanguthevar Rajasekaran; Martin R Schiller
Journal:  Nucleic Acids Res       Date:  2015-06-11       Impact factor: 16.971

Review 2.  The role of lncRNA-mediated ceRNA regulatory networks in pancreatic cancer.

Authors:  Jichuan Xu; Jian Xu; Xinyuan Liu; Jianxin Jiang
Journal:  Cell Death Discov       Date:  2022-06-14

Review 3.  Pseudogene-expressed RNAs: a new frontier in cancers.

Authors:  Xuefei Shi; Fengqi Nie; Zhaoxia Wang; Ming Sun
Journal:  Tumour Biol       Date:  2015-12-10

Review 4.  Non-coding landscapes of colorectal cancer.

Authors:  Marco Ragusa; Cristina Barbagallo; Luisa Statello; Angelo Giuseppe Condorelli; Rosalia Battaglia; Lucia Tamburello; Davide Barbagallo; Cinzia Di Pietro; Michele Purrello
Journal:  World J Gastroenterol       Date:  2015-11-07       Impact factor: 5.742

5.  No convincing association between genetic markers and respiratory symptoms: results of a GWA study.

Authors:  Xiang Zeng; Judith M Vonk; Kim de Jong; Xijin Xu; Xia Huo; H Marike Boezen
Journal:  Respir Res       Date:  2017-01-10

6.  The pseudogene derived long noncoding RNA DUXAP8 promotes gastric cancer cell proliferation and migration via epigenetically silencing PLEKHO1 expression.

Authors:  Hong-Wei Ma; Min Xie; Ming Sun; Tian-Yu Chen; Rong-Rong Jin; Tian-Shi Ma; Qin-Nan Chen; Er-Bao Zhang; Xue-Zhi He; Wei De; Zhi-Hong Zhang
Journal:  Oncotarget       Date:  2016-08-05

7.  The pseudogene-derived long non-coding RNA SFTA1P suppresses cell proliferation, migration, and invasion in gastric cancer.

Authors:  Hongwei Ma; Tianshi Ma; Miao Chen; Zigui Zou; Zhihong Zhang
Journal:  Biosci Rep       Date:  2018-04-20       Impact factor: 3.840

Review 8.  Retrotransposon-induced mosaicism in the neural genome.

Authors:  Gabriela O Bodea; Eleanor G Z McKelvey; Geoffrey J Faulkner
Journal:  Open Biol       Date:  2018-07       Impact factor: 6.411

9.  lncRNA PCNAP1 predicts poor prognosis in breast cancer and promotes cancer metastasis via miR‑340‑5p‑dependent upregulation of SOX4.

Authors:  Yang Yu; Yaning He; Yingbo Shao; Qi Chen; Hui Liu
Journal:  Oncol Rep       Date:  2020-07-20       Impact factor: 3.906

Review 10.  Pseudogenes regulate parental gene expression via ceRNA network.

Authors:  Yang An; Kendra L Furber; Shaoping Ji
Journal:  J Cell Mol Med       Date:  2016-08-25       Impact factor: 5.310

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