Literature DB >> 24817732

Purification, crystallization and phase determination of the DR1998 haem b catalase from Deinococcus radiodurans.

Patrícia T Borges1, Cecília S Miranda1, Sandra P Santos1, João N Carita1, Carlos Frazão1, Célia V Romão1.   

Abstract

The protective mechanisms of Deinococcus radiodurans against primary reactive oxygen species involve nonenzymatic scavengers and a powerful enzymatic antioxidant system including catalases, peroxidases and superoxide dismutases that prevents oxidative damage. Catalase is an enzyme that is responsible for the conversion of H2O2 to O2 and H2O, protecting the organism from the oxidative effect of H2O2. This study reports the purification and crystallization of the DR1998 catalase from D. radiodurans. The crystals diffracted to 2.6 Å resolution and belonged to space group C2221, with unit-cell parameters a = 97.33, b = 311.88, c = 145.63 Å, suggesting that they contain four molecules per asymmetric unit. The initial phases were determined by molecular replacement and the obtained solution shows the typical catalase quaternary structure. A preliminary model of the protein structure has been built and refinement is currently in progress.

Entities:  

Keywords:  bacteria; metalloproteins; reactive oxygen species

Mesh:

Substances:

Year:  2014        PMID: 24817732      PMCID: PMC4014341          DOI: 10.1107/S2053230X1400764X

Source DB:  PubMed          Journal:  Acta Crystallogr F Struct Biol Commun        ISSN: 2053-230X            Impact factor:   1.056


  30 in total

1.  Global analysis of the Deinococcus radiodurans proteome by using accurate mass tags.

Authors:  Mary S Lipton; Ljiljana Pasa-Tolic'; Gordon A Anderson; David J Anderson; Deanna L Auberry; John R Battista; Michael J Daly; Jim Fredrickson; Kim K Hixson; Heather Kostandarithes; Christophe Masselon; Lye Meng Markillie; Ronald J Moore; Margaret F Romine; Yufeng Shen; Eric Stritmatter; Nikola Tolic'; Harold R Udseth; Amudhan Venkateswaran; Kwong-Kwok Wong; Rui Zhao; Richard D Smith
Journal:  Proc Natl Acad Sci U S A       Date:  2002-08-12       Impact factor: 11.205

2.  Improved tools for biological sequence comparison.

Authors:  W R Pearson; D J Lipman
Journal:  Proc Natl Acad Sci U S A       Date:  1988-04       Impact factor: 11.205

3.  Solvent content of protein crystals.

Authors:  B W Matthews
Journal:  J Mol Biol       Date:  1968-04-28       Impact factor: 5.469

Review 4.  Oxidative stress resistance in Deinococcus radiodurans.

Authors:  Dea Slade; Miroslav Radman
Journal:  Microbiol Mol Biol Rev       Date:  2011-03       Impact factor: 11.056

Review 5.  Carotenoid biosynthesis in extremophilic Deinococcus-Thermus bacteria.

Authors:  Bing Tian; Yuejin Hua
Journal:  Trends Microbiol       Date:  2010-09-09       Impact factor: 17.079

6.  The structures and electronic configuration of compound I intermediates of Helicobacter pylori and Penicillium vitale catalases determined by X-ray crystallography and QM/MM density functional theory calculations.

Authors:  Mercedes Alfonso-Prieto; Anton Borovik; Xavier Carpena; Garib Murshudov; William Melik-Adamyan; Ignacio Fita; Carme Rovira; Peter C Loewen
Journal:  J Am Chem Soc       Date:  2007-03-15       Impact factor: 15.419

7.  Characterization of monofunctional catalase KatA from radioresistant bacterium Deinococcus radiodurans.

Authors:  Issei Kobayashi; Takashi Tamura; Haitham Sghaier; Issay Narumi; Shotaro Yamaguchi; Koichi Umeda; Kenji Inagaki
Journal:  J Biosci Bioeng       Date:  2006-04       Impact factor: 2.894

Review 8.  Manganese complexes: diverse metabolic routes to oxidative stress resistance in prokaryotes and yeast.

Authors:  Valeria C Culotta; Michael J Daly
Journal:  Antioxid Redox Signal       Date:  2013-02-06       Impact factor: 8.401

9.  Unusual Cys-Tyr covalent bond in a large catalase.

Authors:  Adelaida Díaz; Eduardo Horjales; Enrique Rudiño-Piñera; Rodrigo Arreola; Wilhelm Hansberg
Journal:  J Mol Biol       Date:  2004-09-17       Impact factor: 5.469

10.  Phaser crystallographic software.

Authors:  Airlie J McCoy; Ralf W Grosse-Kunstleve; Paul D Adams; Martyn D Winn; Laurent C Storoni; Randy J Read
Journal:  J Appl Crystallogr       Date:  2007-07-13       Impact factor: 3.304

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.