Literature DB >> 24817719

Crystallization and preliminary X-ray crystallographic analysis of the XoGroEL chaperonin from Xanthomonas oryzae pv. oryzae.

Huyen Thi Tran1, Tan Viet Pham1, Ho Phuong Thuy Ngo2, Myoung Ki Hong2, Jeong Gu Kim3, Sang Hee Lee4, Yeh Jin Ahn5, Lin Woo Kang2.   

Abstract

Along with the co-chaperonin GroES, the chaperonin GroEL plays an essential role in enhancing protein folding or refolding and in protecting proteins against misfolding and aggregation in the cellular environment. The XoGroEL gene (XOO_4288) from Xanthomonas oryzae pv. oryzae was cloned and the protein was expressed, purified and crystallized. The purified XoGroEL protein was crystallized using the hanging-drop vapour-diffusion method and a crystal diffracted to a resolution of 3.4 Å. The crystal belonged to the orthorhombic space group P212121 with 14 monomers in the asymmetric unit, with a corresponding VM of 2.7 Å(3) Da(-1) and a solvent content of 54.5%.

Entities:  

Keywords:  GroEL; Xanthomonas oryzae pv. oryzae (Xoo); chaperone

Mesh:

Substances:

Year:  2014        PMID: 24817719      PMCID: PMC4014328          DOI: 10.1107/S2053230X14006591

Source DB:  PubMed          Journal:  Acta Crystallogr F Struct Biol Commun        ISSN: 2053-230X            Impact factor:   1.056


  23 in total

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Journal:  J Mol Biol       Date:  2003-11-28       Impact factor: 5.469

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5.  The SWISS-MODEL workspace: a web-based environment for protein structure homology modelling.

Authors:  Konstantin Arnold; Lorenza Bordoli; Jürgen Kopp; Torsten Schwede
Journal:  Bioinformatics       Date:  2005-11-13       Impact factor: 6.937

6.  Crystal structures of d-alanine-d-alanine ligase from Xanthomonas oryzae pv. oryzae alone and in complex with nucleotides.

Authors:  Thanh Thi Ngoc Doan; Jin-Kwang Kim; Ho-Phuong-Thuy Ngo; Huyen-Thi Tran; Sun-Shin Cha; Kyung Min Chung; Kim-Hung Huynh; Yeh-Jin Ahn; Lin-Woo Kang
Journal:  Arch Biochem Biophys       Date:  2014-01-16       Impact factor: 4.013

7.  Solvent content of protein crystals.

Authors:  B W Matthews
Journal:  J Mol Biol       Date:  1968-04-28       Impact factor: 5.469

8.  Homologous expression and T3SS-dependent secretion of TAP-tagged Xo2276 in Xanthomonas oryzae pv. oryzae induced by rice leaf extract and its direct in vitro recognition of putative target DNA sequence.

Authors:  Seunghwan Kim; Thi-Dieu-Hanh Nguyen; Joohee Lee; Myoung-ki Hong; Tan-Viet Pham; Yeh-Jin Ahn; Byoung-Moo Lee; Ye Sun Han; Dong-Eun Kim; Jeong-Gu Kim; Lin-Woo Kang
Journal:  J Microbiol Biotechnol       Date:  2013-01       Impact factor: 2.351

9.  ATP-triggered conformational changes delineate substrate-binding and -folding mechanics of the GroEL chaperonin.

Authors:  Daniel K Clare; Daven Vasishtan; Scott Stagg; Joel Quispe; George W Farr; Maya Topf; Arthur L Horwich; Helen R Saibil
Journal:  Cell       Date:  2012-03-22       Impact factor: 41.582

10.  Phaser crystallographic software.

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  1 in total

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Journal:  Evid Based Complement Alternat Med       Date:  2022-03-24       Impact factor: 2.629

  1 in total

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